111 Works
DSM-5 posttraumatic stress symptom dimensions and health-related quality of life among Chinese earthquake survivors
Gen Li, Li Wang, Chengqi Cao, Ruojiao Fang, Ping Liu, Shu Luo, Jianxin Zhang, Brain J. Hall & Jon D. Elhai
It has been well-documented that posttraumatic stress symptoms cause impairments in health-related quality of life (HRQoL). Until now we have little data on how DSM-5 PTSD symptom dimensions relate to different aspects of HRQoL. Clarifying this question would be informative to improve the quality of life of PTSD patients. This study aimed to investigate the effects of dimensions of a well-supported seven-factor model of DSM-5 PTSD symptoms on physical and psychosocial HRQoL. A total of...
Long non-coding RNA DNMBP-AS1 promotes prostate cancer development by regulating LCLAT1
Xiangang Yin, Suying Wang, Rong Ge, Jinping Chen, Youliang Gao, Shanshan Xu & Ting Yang
Prostate cancer (PCa) is as a serious threat to male’s health around the world. Recent studies have indicated that long non-coding RNAs (lncRNAs) occupy an important position in various human cancers. However, the function and mechanism of lncRNA DNMBP antisense RNA 1 (DNMBP-AS1) in PCa is rarely investigated. RT-qPCR analysis was used to test gene expression. CCK-8, colony formation, EdU staining and transwell assays were conducted to assess the function of DNMBP-AS1 on PCa cell...
Niclosamide is a potential candidate for the treatment of chemo-resistant osteosarcoma
Xiaoling Huang, Wei Wang & Yong Li
Abstract Chemotherapy is the main treatment option for advanced osteosarcoma, which is the most common type of primary bone malignancy. However, patients develop resistance rapidly and many succumb to the disease. Niclosamide, an anthelmintic drug, has been recently identified to display potent and selective anti-cancer activity. In this work, we show that niclosamide at sub-micromolar concentrations inhibits proliferation and migration, and induces apoptosis in both parental and chemo-resistant osteosarcoma cells, with much less toxicity in...
The role of lung ultrasonography in the assessment of overhydration in maintenance hemodialysis patients
Linlin Cui, Jiejian Chen & Chaoyang Ye
Existed methods like biochemical markers improve the accuracy of fluid evaluation for the maintenance hemodialysis patients, but none of them has become the gold standard. This study aimed to evaluate the potential of lung ultrasonography as a useful tool for monitoring the volume status of the patients. A total of 88 patients undergoing maintenance hemodialytic were enrolled in this prospective observational study. Patients were divided into three groups: overhydration (OH), normohydration, and hypohydration according to...
An optimized method for Oil Red O staining with the salicylic acid ethanol solution
Junbao Du, Li Zhao, Quan Kang, Yun He & Yang Bi
Oil Red O (ORO) staining is a commonly used experimental technique to detect lipid content in cells or tissues. Freshly prepared ORO in 60% isopropanol is the most widely used method at present. However, isopropanol is volatile and harmful to the human body. It will also affect the interpretation of the results due to the formation of crystals and non-specific diffuse staining. In this paper, by screening and validation, we report a salicylic acid ethanol...
A global dataset of viral sequence, diversity, and distribution of arboviruses and arthropod-specific viruses
Ying Huang, Shunlong Wang, Hong Liu, Evans Atoni, Fei Wang, Wei Chen, Zhaolin Li, Sergio Rodriguez, Zhiming Yuan, Zhaoyan Ming & Han Xia
We built a comprehensive dataset of the arboviruses and arthropod-specific viruses by curating worldwide available data from Arbovirus Catalog, Section VIII-F of the Biosafety in Microbiological and Biomedical Laboratories 6th edition, Virus Metadata Resource of International Committee on Taxonomy of Viruses, and GenBank. This dataset includes a complete information on viral taxonomy, biological characteristics, vectors and vertebrate hosts, distribution, recommended biosafety levels, genome segment, and nucleotide/amino acid sequences, which will facilitate research by scientists/researchers of...
Expression and genotype datasets associated with the preprint titled: A role for heritable transcriptomic variation in maize adaptation to temperate environments https://www.biorxiv.org/content/10.1101/2022.01.28.478212v1
Guangchao Sun, Huihui Yu, Peng Wang, Martha G. Lopez Guerrero, Ravi V. Mural, Olivier N. Mizero, Marcin Grzybowski, Baoxing Song, Karin van Dijk, Daniel P. Schachtman, Chi Zhang & James C. Schnable
The expression profiled from 340 distinct maize genotypes used for an eGWAS analysis. In the file named 'eGWAS340_repMerged_Untransformed_fpkm.csv' , FPKM of 19,565 genes profiled from the root tissues of 340 maize genotypes, replicated genotypes were averaged.
'eGWAS340_repUnmerged_Untransformed_fpkm.csv': FPKM of 19,565 genes profiled from the root tissues of 340 maize genotypes, replicated genotypes were kept raw for heritability calculation.
'eGWAS340_maf05het02.hmp.txt.gz': the SNP genotype data used for eQTL mapping and visible phenotype GWAS
'eGWAS340_repUnmerged_Untransformed_fpkm.csv': FPKM of 19,565 genes profiled from the root tissues of 340 maize genotypes, replicated genotypes were kept raw for heritability calculation.
'eGWAS340_maf05het02.hmp.txt.gz': the SNP genotype data used for eQTL mapping and visible phenotype GWAS
MOVER-R and Penalized MOVER-R Confidence Intervals for the Ratio of Two Quantities
Peng Wang, Yilei Ma, Siqi Xu, Yi-Xin Wang, Yu Zhang, Xiangyang Lou, Ming Li, Baolin Wu, Guimin Gao, Ping Yin & Nianjun Liu
Developing a confidence interval for the ratio of two quantities is an important task in statistics because of its omnipresence in real world applications. For such a problem, the MOVER-R (method of variance recovery for the ratio) technique, which is based on the recovery of variance estimates from confidence limits of the numerator and the denominator separately, was proposed as a useful and efficient approach. However, this method implicitly assumes that the confidence interval for...
Bayesian Log-Rank Test
Jiaqi Gu, Yan Zhang & Guosheng Yin
Comparison of two survival curves is a fundamental problem in survival analysis. Although abundant frequentist methods have been developed for comparing survival functions, inference procedures from the Bayesian perspective are rather limited. In this article, we extract the quantity of interest from the classic log-rank test and propose its Bayesian counterpart. Monte Carlo methods, including a Gibbs sampler and a sequential importance sampling procedure, are developed to draw posterior samples of survival functions and a...
Effects of polyvinylpyrrolidone and poly (ethylene glycol) on preparation of ibuprofen pharmaceutical cocrystal
Xintong Yang, Yang Chen & Ning Qiao
Abstract In this study, we investigated the effects of polymers on the pharmaceutical cocrystal formation process. Ibuprofen (IBU) was selected as the active pharmaceutical ingredient (API), nicotinamide (NIC) and saccharin (SAC) as the cocrystal coformer (CCF), ethanol/water as the solvent, polyvinylpyrrolidone (PVP) and poly (ethylene glycol) (PEG) as the representative polymers. We prepared IBU-NIC and IBU-SAC cocrystals in ethanol-water cosolvent in the absence or presence of polymers. Cocrystal screening products were characterized by FTIR, DSC,...
Study on vibration isolation performance of composite multilayer wave impeding block based on wave impedance ratio under an underground dynamic load
Meng Zhang & Qiang Ma
Abstract Based on the theory of single-phase elastic medium and unsaturated porous medium, the vibration isolation effect of composite multilayer wave impeding block (WIB) in the unsaturated ground under an underground dynamic load is investigated. The results show that the best vibration isolation effect can be obtained by designing the wave impedance ratio between the composite multilayer WIB and unsaturated ground. The composite multilayer WIB improves the vibration-damping bandwidth compared with the homogeneous WIB. The...
Structural insight into TIPE1 functioning as a lipid transfer protein
Sujian Cao, Ye Zhang, Haoqian Jiang, Xuben Hou & Wei Wang
As a member of the tumor necrosis factor-α-induced protein 8 (TNFAIP8/TIPE) family, TIPE1 has been found to be associated with many cellular signaling pathways in regulating apoptosis, autophagy, and tumorigenesis. However, the position of TIPE1 in the signaling network remains elusive. Here we present the crystal structure of zebrafish TIPE1 in complex with phosphatidylethanolamine (PE) at a resolution of 1.38 Å. By comparison with structures of other three TIPE family proteins, a universal phospholipid-binding mode...
Clustered coefficient regression models for Poisson process with an application to seasonal warranty claim data
Xin Wang, Xin Zhang & Zhengyuan Zhu
Motivated by a product warranty claims data set, we propose clustered coefficient regression models in a non-homogeneous Poisson process for recurrent event data. The proposed method, referred as CLUPP, can estimate the group structure and parameters simultaneously. In our proposed method, a penalized regression approach is used to identify the group structure. Numerical studies show that the proposed approach can identify the group structure well, and outperforms traditional methods such as hierarchical clustering and K-means....
Discovery of a subgenotype of human coronavirus NL63 associated with severe lower respiratory tract infection in China, 2018
Yanqun Wang, Xin Li, Wenkuan Liu, Mian Gan, Lu Zhang, Jin Wang, Zhaoyong Zhang, Airu Zhu, Fang Li, Jing Sun, Guoxian Zhang, Zhen Zhuang, Jiaying Luo, Dehui Chen, Shuyan Qiu, Li Zhang, Duo Xu, Chris Ka Pun Mok, Fuchun Zhang, Jingxian Zhao, Rong Zhou & Jincun Zhao
Human coronavirus NL63 (HCoV-NL63) is primarily associated with common cold in children, elderly and immunocompromised individuals. Outbreaks caused by HCoV-NL63 are rare. Here we report a cluster of HCoV-NL63 cases with severe lower respiratory tract infection that arose in Guangzhou, China, in 2018. Twenty-three hospitalized children were confirmed to be HCoV-NL63 positive, and most of whom were hospitalized with severe pneumonia or acute bronchitis. Whole genomes of HCoV-NL63 were obtained using next-generation sequencing. Phylogenetic and...
The clinical features and image characteristics of Meniere’s disease patients with endolymphatic hydrops confirmed by enhanced magnetic resonance imaging
Wei Chen, Xiao Wu, Yue Geng, Naier Lin & Yan Sha
Abstract Objectives: To analyze and summarize the clinical features and image characteristics of Meniere’s Disease (MD) patients with Endolymphatic Hydrops (EH) confirmed by enhanced Magnetic Resonance Imaging (MRI). Methods: 252 MD patients with EH confirmed by MRI were enrolled. All patients met the diagnostic criteria forMD and underwent intravenous gadolinium injection. After 4 h, MR examinations were performed. The Nakashima grading standard was used to classify EH and evaluate its correlation with clinical features. Results:...
Effective personalized neoantigen vaccine plus anti-PD-1 in a PD-1 blockade-resistant lung cancer patient. Supplementary Tables
Qing Xu, Li Yang, Xu Dan, Heng Xu, Yuquan Wei, Huanlong Qin, Zhuqing Liu, Yu Zhao, Juemin Fang, Zhongzheng Zhu, Jiaqiang Wang & Song Gao
Supplementary Table 1. Neoantigens predicted and selected in this study. Supplementary Table 2. Significant expanded TCR clones specific to neoantigens
NLR family CARD domain containing 5 promotes hypoxia-induced cancer progress and carboplatin resistance by activating PI3K/AKT via carcinoembryonic antigen related cell adhesion molecule 1 in non-small cell lung cancer
Yu Dong, Tao Xu, Dongfan Li, Hua Guo, Xusheng Du, Guangshun Li, Jiakuan Chen, Bo Wang, Peng Wang, Gang Yu, Xuan Zhao & Ruiqi Xue
It is well known that non-small cell lung cancer (NSCLC) is a malignant tumor with high incidence in the world. We aimed to clarify a possible target and identify its precise molecular biological mechanism in NSCLC. NLR family CARD domain containing 5 (NLRC5) is widely expressed in tissues and exerts a vital role in anti-tumor immunity. We determined NLRC5 expression by RT-qPCR and western blot assay. The role of NLRC5 in the development of NSCLC...
Aging deteriorated liver Ischemia and reperfusion injury by suppressing Tribble’s proteins 1 mediated macrophage polarization
Qi Chen, Yating Song, Ningli Yang, Xiaoming Ai, Liyong Pu & Lianbao Kong
Aggravated liver injury has been reported in aged ischemia/reperfusion-stressed livers; however, the mechanism of aged macrophage inflammatory regulation is not well understood. Here, we found that the adaptor protein TRIB1 plays a critical role in the differentiation of macrophages and the inflammatory response in the liver after ischemia/reperfusion injury. In the present study, we determined that aging promoted macrophage-mediated liver injury and that inflammation was mainly responsible for lower M2 polarization in liver transplantation-exposed humans...
Tumor-infiltrating lymphocyte: features and prognosis of lymphocytes infiltration on colorectal cancer
Miao Qin, Gang Chen, Jinxia Hou, Li Wang, Qunfeng Wang, Lina Wang, Dan Jiang, Ye Hu, Bei Xie, Jing Chen, Hulai Wei & Guangxian Xu
Tumor-infiltrating lymphocytes (TILs) are vital elements of the tumor microenvironment (TME), and the anti-tumor activity of TILs on colorectal cancer (CRC) has been a topic of concern. However, the characteristics and prognosis of the various types of lymphocyte infiltration in CRC have not been fully explained. Our study aimed to identify distinct features and prognosis of TILs. We integrated multiple-cohort databases to illustrate the features, proportions, and prognosis of TILs on CRC. We found that...
Identification of potential prognostic biomarkers in vulval squamous cell carcinoma based on human papillomavirus infection Status-Analysis of GSE183454
Ruxing Xi, Donghong Li, Shuanque Yang, Hui Zhang, Lijuan Hu, Xiaowei Wang, Guoqing Wang & Yan Wang
This study aimed to elucidate the differences in vulval squamous cell carcinomas (VSCC) based on the HPV infection status. The sequencing data GSE183454 which contains 23 VSCC samples based on its HPV infection status was obtained from the Gene Expression Omnibus (GEO) database. We comprehensively dissected the differences of genomic and tumour microenvironment (TME) immune cell infiltration landscapes between HPV + and HPV- VSCC. The potential molecular mechanisms of prognostic genes were explored by functional...
LncRNA prediction of Chinese sturgeon
Xiaoling Liao, Libin Zhang, Hua Tian, Bo Yang, Ezhou Wang & Bin Zhu
The LncRNAs identified in Chinese sturgeon
Data to produce the Figures in \"Efficient scattering loss of energetic electrons by enhanced higher-band ECH waves observed by Van Allen Probes\"
Yang Qiwu, Si Liu, Sai Zhang, Jiawen Tang, Fuliang Xiao, Qinghua Zhou, Zhonglei Gao, Yihua He, Zhoukun Deng & Ping Li
Electron cyclotron harmonic (ECH) waves, which are responsible for the diffuse aurora, are usually observed with the strongest intensity in the first band. Here, we present observations of enhanced higher-band ECH with wave amplitudes ~1 mV/m by Van Allen Probes. Fully thermal simulation results indicate that these waves can be locally excited by the observed electron distributions, and higher plasma densities and lower magnetic strength are beneficial for exciting the higher-band ECH. The pitch angle...
Data to produce the Figures in \"Efficient scattering loss of energetic electrons by enhanced higher-band ECH waves observed by Van Allen Probes\"
Yang Qiwu, Si Liu, Sai Zhang, Jiawen Tang, Fuliang Xiao, Qinghua Zhou, Zhonglei Gao, Yihua He, Zhoukun Deng & Ping Li
Electron cyclotron harmonic (ECH) waves, which are responsible for the diffuse aurora, are usually observed with the strongest intensity in the first band. Here, we present observations of enhanced higher-band ECH with wave amplitudes ~1 mV/m by Van Allen Probes. Fully thermal simulation results indicate that these waves can be locally excited by the observed electron distributions, and higher plasma densities and lower magnetic strength are beneficial for exciting the higher-band ECH. The pitch angle...
Research on map emotional semantics using deep learning approach
Daping Xi, Xini Hu, Lin Yang, Nai Yang, Yanzhu Liu & Han Jiang
The main purpose of the research on map emotional semantics is to describe and express the emotional responses caused by people observing images through computer technology. Nowadays, map application scenarios tend to be diversified, and the increasing demand for emotional information of map users bring new challenges for cartography. However, the lack of evaluation of emotions in the traditional map drawing process makes it difficult for the resulting maps to reach emotional resonance with map...
Identification of potential prognostic biomarkers in vulval squamous cell carcinoma based on human papillomavirus infection Status-Analysis of GSE183454
Ruxing Xi, Donghong Li, Shuanque Yang, Hui Zhang, Lijuan Hu, Xiaowei Wang, Guoqing Wang & Yan Wang
This study aimed to elucidate the differences in vulval squamous cell carcinomas (VSCC) based on the HPV infection status. The sequencing data GSE183454 which contains 23 VSCC samples based on its HPV infection status was obtained from the Gene Expression Omnibus (GEO) database. We comprehensively dissected the differences of genomic and tumour microenvironment (TME) immune cell infiltration landscapes between HPV + and HPV- VSCC. The potential molecular mechanisms of prognostic genes were explored by functional...
Affiliations
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Ministry of Education of the People's Republic of China111
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Zhejiang University74
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Shanghai Jiao Tong University70
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Chinese Academy of Medical Sciences & Peking Union Medical College68
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Fudan University61
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Shandong University59
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Sichuan University57
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Capital Medical University56
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Huazhong University of Science and Technology55
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Sun Yat-sen University50