Additional file 2. Supplementary Tables S1, S2, and S3.

Additional file 1. Example of translation from VCF into GDM format for genomic region data: This .xlsx (MS Excel) spreadsheet exemplifies the transformation of the original 1KGP mutations—expressed in VCF format—into GDM genomic regions. As a demonstrative example, some variants about chromosome X have been selected from the source data (in VCF format) and listed in the first table at the top of the file. The values of columns #CHROM, POS, REF and ALT appear...

Global changes in response to human encroachment into natural habitats and carbon emissions are driving the biodiversity extinction crisis and increasing disease emergence risk. Host distributions are one critical component to identify areas at risk of viral spillover, and bats act as reservoirs of diverse viruses. We developed a reproducible ecological niche modelling pipeline for bat hosts of SARS-like viruses (subgenus Sarbecovirus), given that several closely-related viruses have been discovered and sarbecovirus-host interactions have gained...

Seascape connectivity studies, informing the level of exchange of individuals between populations, can provide extremely valuable data for marine population biology and conservation strategy definition. Here we used a multidisciplinary approach to investigate the connectivity of the marbled crab (Pachygrapsus marmoratus), a high dispersal species, in the Adriatic and Ionian basins. A combination of genetic analyses (based on 15 microsatellites screened in 314 specimens), Lagrangian simulations (obtained with a biophysical model of larval dispersal) and...

Additional file 2. Example of transformed metadata: In this .xlsx (MS Excel) file, we list all the output metadata categories generated for each sample from the transformation of the 1KGP input datasets. The output metadata include information collected from all the four 1KGP metadata files considered. Some categories are not reported in the source metadata files—they are identified by the label manually_curated__...—and were added by the developed pipeline to store technical details (e.g., download date,...

Additional file 2. Example of transformed metadata: In this .xlsx (MS Excel) file, we list all the output metadata categories generated for each sample from the transformation of the 1KGP input datasets. The output metadata include information collected from all the four 1KGP metadata files considered. Some categories are not reported in the source metadata files—they are identified by the label manually_curated__...—and were added by the developed pipeline to store technical details (e.g., download date,...

Additional file 2. Supplementary Tables S1, S2, and S3.

The Cluster Weighted Robust Model (CWRM) is a recently introduced methodology to robustly estimate mixtures of regressions with random covariates. The CWRM allows users to flexibly perform regression clustering, safeguarding it against data contamination and spurious solutions. Nonetheless, the resulting solution depends on the chosen number of components in the mixture, the percentage of impartial trimming, the degree of heteroscedasticity of the errors around the regression lines and of the clusters in the explanatory variables....

The Cluster Weighted Robust Model (CWRM) is a recently introduced methodology to robustly estimate mixtures of regressions with random covariates. The CWRM allows users to flexibly perform regression clustering, safeguarding it against data contamination and spurious solutions. Nonetheless, the resulting solution depends on the chosen number of components in the mixture, the percentage of impartial trimming, the degree of heteroscedasticity of the errors around the regression lines and of the clusters in the explanatory variables....

Additional file 1. Example of translation from VCF into GDM format for genomic region data: This .xlsx (MS Excel) spreadsheet exemplifies the transformation of the original 1KGP mutations—expressed in VCF format—into GDM genomic regions. As a demonstrative example, some variants about chromosome X have been selected from the source data (in VCF format) and listed in the first table at the top of the file. The values of columns #CHROM, POS, REF and ALT appear...