173 Works

Reprdocutive biology of Grevillea bedggoodiana study. Microsatellite data and R-code.

Stanislaw Wawrzyczek, Susan Hoebee & Gareth Holmes
Microasatellite allele data and R-code used in the study: Wawrzyczek, S., Holmes, G.D. & Hoebee, S.E. Reproductive biology and population structure of the endangered shrub Grevillea bedggoodiana (Proteaceae). Conserv Genet (2022). https://doi.org/10.1007/s10592-022-01480-4

Additional file 1 of Clinical implications of circulating tumor DNA in predicting the outcome of diffuse large B cell lymphoma patients receiving first-line therapy

Miaomiao Li, Lan Mi, Chunyang Wang, Xiaojuan Wang, Jianhua Zhu, Fei Qi, Hui Yu, Yingying Ye, Dedao Wang, Jiaowu Cao, Dingyao Hu, Quanyu Yang, Dandan Zhao, Tonghui Ma, Yuqin Song & Jun Zhu
Additional file 1: Table S1. Gene list of Onco-LymScan panel. Table S2. Overview of patient characteristics. Table S3. Demographic of patient characteristics. Table S4. Sequencing quality data of tumor gDNA samples. Table S5. Sequencing quality data of cfDNA samples. Table S6. Univariate Cox proportional hazard regression survival analysis including pretreatment ctDNA levels and other clinical indices.

Qualitative study data

Richard Gray
Tables showing coded data.

Data from: Optimising the hatching success of artificially incubated eggs for use in a conservation program for the western saw-shelled turtle (Myuchelys bellii)

Louise Streeting, Deborah Bower, Martin Dillon, Phil Spark, Michael Gough, Adam Skidmore, Paul McDonald, Hannah Delaney, Adrienne Burns, Sandy Watson, Duminda Dissanayake, Arthur Georges & Donald McKnight
Artificial incubation of eggs and the release of hatchlings into the wild is a common conservation intervention designed to augment threatened turtle populations. We investigate a range of incubation temperatures to establish an optimal temperature for maximum hatching success of western saw-shelled turtle (Myuchelys bellii) eggs. We report on the influence of incubation temperature on incubation duration and hatching success and describe two experimental incubation methods which, for the same incubation temperature, resulted in 77%...

Risk factors for the recurrence of pelvic organ prolapse: a meta-analysis

Wei Shi & Lingling Guo
Female pelvic organ prolapse (POP) is a common condition, which has a high recurrence rate after reconstructive surgery, and the risk factors for POP recurrence are unclear. The aim of this study was to perform a meta-analysis to determine risk factors for POP recurrence. A thorough search of PubMed, Medline, EMBASE, Cochrane Central Register of Controlled Trials, and China Academic Journal Network Publishing Database was conducted for relevant publications until 29 October 2022, without language...

Encapsulation of Mitoxantrone within Cucurbit[8]uril Decreases Toxicity and Enhances Survival in a Mouse Model of Cancer

Anthony Day, Lynne Wallace, J. Grant Collins, Shyam K. Konda, Ruqaya Maliki, Sean McGrath, Belinda S. Parker, Tina Robinson, Alex Spurling, Alison Cheong, Peter Lock, Paul Pigram, Don R. Phillips & Suzanne Cutts

Data for: Whole-of-community invertebrate rewilding: Leaf litter transplants rapidly increase beetle diversity during restoration

Peter Contos, Nicholas Murphy & Heloise Gibb
Restoration of degraded areas is now a central tool in humanity’s response to continued species loss. However, restoration projects often report exceedingly slow or failed recolonization of fauna, especially dispersal-constrained groups such as invertebrates. Active interventions via reintroducing or “rewilding” invertebrates may assist recolonization and speed up the restoration of communities towards a desired target. However, invertebrate rewilding is rarely implemented during ecological restoration. Here, we studied the efficacy of invertebrate rewilding as a means...

Caecal dysfunction and neuro-immune alterations in a preclinical model of autism

Chalystha Yie Qin Lee, Gayathri K Balasuriya, Madushani Herath, Ashley Franks & Elisa Hill-Yardin
Autism Spectrum Disorder (ASD; autism) is commonly presented with gastrointestinal (GI) illness in addition to core diagnostic behavioural traits. Important for GI homeostasis is the appendix, or the caecum in mice, which functions as a key site for fermentation and a microbial reservoir. Even so, the role of the appendix and caecum in autism-associated GI symptoms remains uninvestigated. Here, we studied mice with an autism-associated missense mutation in the post-synaptic protein neuroligin-3 (NL3R451C), which impacts...

The BlueBio Project’s database

Alessandra Spagnolo, Anna Nora Tassetti, Paraskevi Afentaki, Marianne Areng, Maria Azzopardi, Steinar Bergseth, Christian Boehm, Jasminka Boljević, Majbritt Bolton-Warberg, Astrid Burhöi, Esther Chacón Campollo, Anders Clarhall, Domnica Coteț, Aldo Covello, Carmen Ferrà, Alessio Gomiero, Fiona Grant, Doris Jozic, Jella Kandziora, Eve Külmallik, Martin Kyvsgaard, Dennis Lisbjerg, Maarja Malm, Tania Manarini, Corinne Muscat … & Gianna Fabi
The BlueBio database is a comprehensive and robust compilation of international and national research projects active in the years 2003-2019 in Fisheries, Aquaculture, Seafood Processing and Marine Biotechnology. Based on the COFASP projects’ database, it was implemented within the ERA-NET Cofund BlueBio project through a 3-years data collection including 3 surveys (.xlsx file) and a wide data retrieval. After being integrated, data were harmonised, shared as open and disseminated through a WebGIS (https://bluebioeconomy.eu/the-bluebio-projects-online-database/). The WebGIS...

GGPPS_model

Ruitao Jin
Models generated using 5XN5 and 1RQI as templates for wild-type GGPPS and its VA mutant in PDB format, water and ion are not included.

Data set for article: Fusing ToF-SIMS images for spatial-spectral resolution enhancement using a convolutional neural network

Wil Gardner
This data set is uploaded as supporting information for the publication entitled: Fusing ToF-SIMS images for spatial-spectral resolution enhancement using a convolutional neural network
Files are as follows: gold_mesh_data.mat - MATLAB workspace file containing peak-picked ToF-SIMS data (hyperspectral array) for the gold mesh sample. tumor_tissue_data.mat - MATLAB workspace file containing peak-picked ToF-SIMS data (hyperspectral array) for the tumor tissue sample. Additional details about the datasets can be found in the published article.
If...

cellCounts

Yang Liao, Dinesh Raghu, Bhupinder Pal, Lisa Mielke & Wei Shi
This page includes the data and code necessary to reproduce the results of the following paper: Yang Liao, Dinesh Raghu, Bhupinder Pal, Lisa Mielke and Wei Shi. cellCounts: fast and accurate quantification of 10x Chromium single-cell RNA sequencing data. Under review. A Linux computer running an operating system of CentOS 7 (or later) or Ubuntu 20.04 (or later) is recommended for running this analysis. The computer should have >2 TB of disk space and >64...

sj-xlsx-2-aut-10.1177_13623613221138643 – Supplemental material for Cost-benefit analysis of a non-government organization and Australian government collaborative supported employment program for autistic people

Darren Hedley, David FE Hedley, Emmanuelle Walkowiak, Simon M Bury, Jennifer R Spoor & Alan Shiell
Supplemental material, sj-xlsx-2-aut-10.1177_13623613221138643 for Cost-benefit analysis of a non-government organization and Australian government collaborative supported employment program for autistic people by Darren Hedley, David FE Hedley, Emmanuelle Walkowiak, Simon M Bury, Jennifer R Spoor and Alan Shiell in Autism

Providing rehabilitation services to major traumatic injury survivors in rural Australia: perspectives of rehabilitation practitioners and compensation claims managers

Vanessa L. Sharp, Betina Gardner, Jennie L. Ponsford, Jodie E. Chapman, Melita J. Giummarra, Natasha A. Lannin, John Olver & Renerus J. Stolwyk
The delivery of healthcare services in rural locations can be challenging. From the perspectives of rural rehabilitation practitioners and compensation claims managers, this study explored the experience of providing and coordinating rehabilitation services for rural major traumatic injury survivors. Semi-structured interviews with 14 rural rehabilitation practitioners and 10 compensation claims managers were transcribed, and reflexive thematic analysis was conducted. Six themes were identified (1) Challenges finding and connecting with rural services, (2) Factors relating to...

GRDC National Phenology Initiative field experiment data

Corinne Celestina, Maxwell Bloomfield & James Hunt
The GRDC National Phenology Initiative aimed to deliver accurate cultivar- and environment-specific estimations of wheat and barley phenology to grain growers and their advisers. It achieved this by improving and validating the APSIM Next Gen phenology routine and allowing cultivars to be parameterised using controlled environment phenotypic data, genotypic data or a combination of the two. Simulations were validated against field data for a wide range of phenology phenotypes at diverse locations across the Australian...

Violence against health care workers - Transcript Focus Groups

Evelien Spelten
De-identified transcripts of focus groups held with Emergency Department nurses of a metropolitan hospital in Australia on violence against emergency workers. In the focus group, the nurses' perception about perpetrators of violence against health care workers were identified and discussed.

Differential effects of ecosystem engineering by the superb lyrebird Menura novaehollandiae and herbivory by large mammals on floristic regeneration and structure in wet eucalypt forests

Alex Maisey
Ecosystem engineers that modify soil and ground-layer properties exert a strong influence on vegetation communities in ecosystems worldwide. Understanding the interactions between animal engineers and vegetation is challenging when in the presence of large herbivores, as many vegetation communities are simultaneously affected by both engineering and herbivory. The superb lyrebird Menura novaehollandiae, an ecosystem engineer in wet forests of south-eastern Australia, extensively modifies litter and soil on the forest floor. The aim of this study...

Synthesis methods Stata code: Cumpston_et_al_2023_other_synthesis_methods.do

Miranda Cumpston, Sue Brennan, Rebecca Ryan & Joanne McKenzie
This Stata .do file provides the code used to analyse the data extracted and coded from systematic reviews included in the paper: Cumpston MS, Brennan SE, Ryan R, McKenzie JE. 2023. Statistical synthesis methods other than meta-analysis are commonly used, but are seldom specified: a survey of systematic reviews of interventions Input file: Synthesis methods data file: Cumpston_et_al_2023_other_synthesis_methods.xlsx (https://doi.org/10.26180/20785396) Associated file: Synthesis methods data dictionary (https://doi.org/10.26180/20785948) Study protocol: Cumpston MS, McKenzie JE, Thomas J and...

Synthesis methods data file: Cumpston_et_al_2023_other_synthesis_methods.xlsx

Miranda Cumpston, Sue Brennan, Joanne McKenzie & Rebecca Ryan
This file includes the data extracted and coded from systematic reviews included in the paper: "Cumpston MS, Brennan SE, Ryan R, McKenzie JE. 2023. Statistical synthesis methods other than meta-analysis are commonly used but seldom specified: survey of systematic reviews of interventions"
Associated files: 1. Synthesis methods data dictionary (https://doi.org/10.26180/20785948) 2. Synthesis methods Stata code: Cumpston_et_al_2023_other_synthesis_methods.do (https://doi.org/10.26180/20786251) 3. Study protocol: Cumpston MS, McKenzie JE, Thomas J and Brennan SE. The use of ‘PICO for...

Data from: The Phylogenetic Position of the Musky Rat-Kangaroo and the Evolution of Bipedal Hopping in Kangaroos (Macropodidae: Diprotodontia)

Angela Burk, Michael Westerman & Mark S. Springer
Kangaroos and their relatives (family Macropodidae) are divided into the subfamilies Macropodinae (kangaroos, wallabies, pademelons) and Potoroinae (rat-kangaroos, potoroos, bettongs). The musky rat-kangaroo, Hypsiprymnodon moschatus, is traditionally allied with other potoroines based primarily on osteological characters and aspects of the female reproductive system. Unlike other macropodids, however, which are capable of bipedal hopping, Hypsiprymnodon is a quadrupedal bounder and lacks several derived features of the pes and tarsus that are presumably adaptations for bipedal hopping....

Data from: Persistent genetic signatures of historic climatic events in an Antarctic octopus

Jan M. Strugnell, Phill C. Watts, Peter J. Smith & A. Louise Allcock
Repeated cycles of glaciation have had major impacts on the distribution of genetic diversity of the Antarctic marine fauna. During glacial periods, ice cover limited the amount of benthic habitat on the continental shelf. Conversely, more habitat and possibly altered seaways, were available during interglacials when the ice receded and the sea level was higher. We used microsatellites and partial sequences of the mitochondrial cytochrome oxidase c subunit 1 (MT-CO1) gene to examine genetic structure...

Data from: Investigation of genetic structure between deep and shallow populations of the southern rock lobster, Jasus edwardsii in Tasmania, Australia

Erin M. J. Morgan, Bridget S. Green, Nicholas P. Murphy & Jan M. Strugnell
The southern rock lobster, Jasus edwardsii, shows clear phenotypic differences between shallow water (red coloured) and deeper water (pale coloured) individuals. Translocations of individuals from deeper water to shallower waters are currently being trialled as a management strategy to facilitate a phenotypic change from lower value pale colouration, common in deeper waters, to the higher value red colouration found in shallow waters. Although panmixia across the J. edwardsii range has been long assumed, it is...

Data from: Evolutionary origins of a bioactive peptide buried within preproalbumin

Alysha G. Elliott, Christina Delay, Huanle Liu, Zaiyang Phua, K. Johan Rosengren, Aurélie H. Benfield, Jose L. Panero, Michelle L. Colgrave, Achala S. Jayasena, Kerry M. Dunse, Marilyn A. Anderson, Edward E. Schilling, Daniel Ortiz-Barrientos, David J. Craik & Joshua S. Mylne
The de novo evolution of proteins is now considered a frequented route for biological innovation, but the genetic and biochemical processes that lead to each newly created protein are often poorly documented. The common sunflower (Helianthus annuus) contains the unusual gene PawS1 (Preproalbumin with SFTI-1) that encodes a precursor for seed storage albumin; however, in a region usually discarded during albumin maturation, its sequence is matured into SFTI-1, a protease-inhibiting cyclic peptide with a motif...

Data from: Climate mediates the effects of disturbance on ant assemblage structure

Heloise Gibb, Nathan J. Sanders, Robert R. Dunn, Simon Watson, Manoli Photakis, Silvia Abril, Alan N. Andersen, Elena Angulo, Inge Armbrecht, Xavier Arnan, Fabricio B. Baccaro, Tom R. Bishop, Raphael Boulay, Cristina Castracani, Israel Del Toro, Thibaut Delsinne, Mireia Diaz, David A. Donoso, Martha L. Enríquez, Tom M. Fayle, Donald H. Feener, Matthew C. Fitzpatrick, Crisanto Gómez, Donato A. Grasso, Sarah Groc … & C. Gomez
Many studies have focused on the impacts of climate change on biological assemblages, yet little is known about how climate interacts with other major anthropogenic influences on biodiversity, such as habitat disturbance. Using a unique global database of 1128 local ant assemblages, we examined whether climate mediates the effects of habitat disturbance on assemblage structure at a global scale. Species richness and evenness were associated positively with temperature, and negatively with disturbance. However, the interaction...

Data from: Ancient mitochondrial DNA provides high-resolution time scale of the peopling of the Americas

Bastien Llamas, Lars Fehren-Schmitz, Guido Valverde, Julien Soubrier, Swapan Mallick, Nadin Rohland, Susanne Nordenfelt, Cristina Valdiosera, Stephen M. Richards, Adam Rohrlach, Maria Inés Barreto Romero, Isabel Flores Espinoza, Elsa Tomasto Cagigao, Lucía Watson Jiménez, Krzysztof Makowski, Ilán Santiago Leboreiro Reyna, Josefina Mansilla Lory, Julio Alejandro Ballivián Torrez, Mario A. Rivera, Richard L. Burger, Maria Constanza Ceruti, Johan Reinhard, R. Spencer Wells, Gustavo Politis, Calogero M. Santoro … & Wolfgang Haak
The exact timing, route, and process of the initial peopling of the Americas remains uncertain despite much research. Archaeological evidence indicates the presence of humans as far as southern Chile by 14.6 thousand years ago (ka), shortly after the Pleistocene ice sheets blocking access from eastern Beringia began to retreat. Genetic estimates of the timing and route of entry have been constrained by the lack of suitable calibration points and low genetic diversity of Native...

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