1,081 Works
Additional file 2 of Identification of molecular subtypes based on inflammatory response in lower-grade glioma
Wanzun Lin, Jing Gao, Haojiong Zhang, Li Chen, Xianxin Qiu, Qingting Huang, Jiyi Hu, Lin Kong & Jiade J. Lu
Additional file 2. Gene list of hallmark inflammatory response.
Data from \" Chemical Origin of Temperature-Dependent Phase Transition and Conductivity in Hydroxyapatite\"
Dingguo Xu & Jing Wang
This dataset contains data relates to the publication " Chemical Origin of Temperature-Dependent Phase Transition and Conductivity in Hydroxyapatite", by Wang et al., 2022. In this work, we use deep potential molecular dynamics simulation to study Temperature-Dependent Phase Transition and Conductivity in Hydroxyapatite. The deep neural network potential is trained on DFT calculations. This dataset contains the deep potential models and the DFT training data reported in the publication, the input files of vasp, lammps,...
Additional file 5 of Mapping of Candidate Genes in Response to Low Nitrogen in Rice Seedlings
Jia Li, Wei Xin, Weiping Wang, Shijiao Zhao, Lu Xu, Xingdong Jiang, Yuxuan Duan, Hongliang Zheng, Luomiao Yang, Hualong Liu, Yan Jia, Detang Zou & Jingguo Wang
Additional file 5: Table S4. Annotation and haplotype analysis of associated genes.
Contrast the distribution, transformation, and degradation of dissolved and particulate organic matter in the South Yellow Sea, the East China Sea, and its adjacent Kuroshio Current
Chongxiao Ji, Gui-Peng Yang, Yan Chen, Yan Li & Lin Zhang
The detailed information of sampling stations, the carbon, nitrogen, and amino acids levels in DOM and POM, as well as other parameters including temperature, salinity, nutrients, chlorophyll-a, and biological parameters (heterotrophic bacteria, Synechococcus, and picoeukaryotes) are dispalyed in this dataset.
Additional file 2 of Exosomal circZNF451 restrains anti-PD1 treatment in lung adenocarcinoma via polarizing macrophages by complexing with TRIM56 and FXR1
Jian Gao, Yong-Qiang Ao, Ling-Xian Zhang, Jie Deng, Shuai Wang, Hai-Kun Wang, Jia-Hao Jiang & Jian-Yong Ding
Additional file 2. The immune related genes that differentially expressed in macrophages after the overexpression of circZNF451.
Additional file 1 of Construction of a transposase accessible chromatin landscape reveals chromatin state of repeat elements and potential causal variant for complex traits in pigs
Tao Jiang, Ziqi Ling, Zhimin Zhou, Xiaoyun Chen, Liqing Chen, Sha Liu, Yingchun Sun, Jiawen Yang, Bin Yang, Jianzhen Huang & Lusheng Huang
Additional file 1: Table S1. Summary information on the ATAC-seq samples investigated in this study. Table S2. Summary information on the RNA-seq samples investigated in this study. Table S3. The information of download data. Table S4. Comparison with peaks of previous study designed by zhou et al. Table S5. Motif enrichment analysis of shared peaks. Table S6. The information of PERV overlapped peaks. Table S7. The information of GWAS SNPs which located in peak regions....
Additional file 2 of Construction of a transposase accessible chromatin landscape reveals chromatin state of repeat elements and potential causal variant for complex traits in pigs
Tao Jiang, Ziqi Ling, Zhimin Zhou, Xiaoyun Chen, Liqing Chen, Sha Liu, Yingchun Sun, Jiawen Yang, Bin Yang, Jianzhen Huang & Lusheng Huang
Additional file 2: Fig. S1. The analysis process and characteristics of peaks. (a) and (b) The ATAC-seq signal enrichment around TSSs and insert size distribution of ATAC-seq for 2 samples (brain_sample1 and brain_sample2). (c) Proportion of tissue-specific peaks that were distal peaks or proximal peaks. (d) Distribution of peak size obtained in this study. Fig. S2. Identifying the functional pathway and tissue specificity via RNA-seq. (a) Hierarchical clustering using gene expression. (b) Functional enrichment of...
Additional file 6 of Metabolic engineering of Escherichia coli BW25113 for the production of 5-Aminolevulinic Acid based on CRISPR/Cas9 mediated gene knockout and metabolic pathway modification
Changchuan Ye, Yuting Yang, Xi Chen, Lijie Yang, Xia Hua, Mengjie Yang, Xiangfang Zeng & Shiyan Qiao
Additional file 6: Fig S6. Standard Plot for ALA measurement. x: the absorbance at 554 nm; y: ALA concentration of sample after diluted (mg/L).
Additional file 4 of STAT3/miR-130b-3p/MBNL1 feedback loop regulated by mTORC1 signaling promotes angiogenesis and tumor growth
Hongwu Li, Ping Liu, Dapeng Li, Zixi Wang, Zhao Ding, Meng Zhou, Xu Chen, Manli Miao, Junli Ding, Wei Lin, Yehai Liu & Xiaojun Zha
Additional file 4: Supplementary Table S8. List of the downregulated differentially expressed genes from RNA sequencing results in Tsc2-/- MEFs and Tsc2+/+ MEFs. All genes were identified with FDR-adjusted p-value<0.05 and absolute value of log2(FC)>1.
Additional file 5 of STAT3/miR-130b-3p/MBNL1 feedback loop regulated by mTORC1 signaling promotes angiogenesis and tumor growth
Hongwu Li, Ping Liu, Dapeng Li, Zixi Wang, Zhao Ding, Meng Zhou, Xu Chen, Manli Miao, Junli Ding, Wei Lin, Yehai Liu & Xiaojun Zha
Additional file 5: Supplementary Table 9. List of the downregulated differentially expressed genes from DEGs in angiofibroma(AF) of TSC patients vs. normal skin. All genes were identified with FDR-adjusted p-value < 0.05 and absolute value of log2(FC) > 1.
SOMAS
Peiyuan Gao, Amity Andersen, Jonathan Sepulveda, Gihan Panapitiya, Aaron Hollas, Emily Saldanha, Vijayakumar Murugesan & Wei Wang
SOMAS dataset and XYZ files
Additional file 2 of Causality of genetically determined metabolites on anxiety disorders: a two-sample Mendelian randomization study
Gui Xiao, Qingnan He, Li Liu, Tingting Zhang, Mengjia Zhou, Xingxing Li, Yijun Chen, Yanyi Chen & Chunxiang Qin
Additional file 2: Table S1. The formula used to calculate R2 and F statistic between exposure and outcome; Table S2. Summary statistics of the anxiety disorders; Table S3–S12. Mendelian Randomization estimation for Amino acid(Table S3); Carbohydrate (Table S4); Co-factor or vitamin(Table S5);Energy(Table S6); Lipid(Table S7); Nucleotide (Table S8); Peptide (Table S9); Xenobiotic(Table S10);X(unknow metabolites) (Table S11);known metabolites (Table S12) on the risk of anxiety disorders; Table S13. The characteristics of SNPs and their genetic associations...
IMPROVING EXPLOSIVE BODY CAPACITY IN FEMALE SHORT TRACK SPEED SKATERS
Jianjun Li, Xinchao Ge & Yang Liu
ABSTRACT Introduction The peculiar characteristics of short track speed skating should be integrated into the psychology of competitions; it is considered that elite athletes engaged in this particular sport should have a healthy psychic condition. Objective Investigate the explosive power of female speed skaters in short track speed skating. Methods 10 key athletes from the national short track speed skating team were selected, and explosive power was tested by T-test, hexagonal test, and pro sensitivity...
Additional file 13 of Exploration of the regulatory relationship between KRAB-Zfp clusters and their target transposable elements via a gene editing strategy at the cluster specific linker-associated sequences by CRISPR-Cas9
Yang Zhang, Fei He, Yanning Zhang, Qian Dai, Qintong Li, Jing Nan, Ruidong Miao & Bo Cheng
Additional file 13 Supplementary Table 5. sgRNA efficiency test in reporter system (raw data for Fig. 4B and D).
Additional file 3 of ERF49 mediates brassinosteroid regulation of heat stress tolerance in Arabidopsis thaliana
Xia Chen, Huidan Xue, Liping Zhu, Huiqin Wang, Hao Long, Jun Zhao, Funing Meng, Yunfei Liu, Yuan Ye, Xiaomin Luo, Zhi Liu, Guanghui Xiao & Shengwei Zhu
Additional file 3. Detailed information of genes upregulated after heat treatment.
Additional file 6 of ERF49 mediates brassinosteroid regulation of heat stress tolerance in Arabidopsis thaliana
Xia Chen, Huidan Xue, Liping Zhu, Huiqin Wang, Hao Long, Jun Zhao, Funing Meng, Yunfei Liu, Yuan Ye, Xiaomin Luo, Zhi Liu, Guanghui Xiao & Shengwei Zhu
Additional file 6. Combined raw data, with each figure on a spreadsheet.
Additional file 6 of ERF49 mediates brassinosteroid regulation of heat stress tolerance in Arabidopsis thaliana
Xia Chen, Huidan Xue, Liping Zhu, Huiqin Wang, Hao Long, Jun Zhao, Funing Meng, Yunfei Liu, Yuan Ye, Xiaomin Luo, Zhi Liu, Guanghui Xiao & Shengwei Zhu
Additional file 6. Combined raw data, with each figure on a spreadsheet.
Additional file 12 of Exploration of the regulatory relationship between KRAB-Zfp clusters and their target transposable elements via a gene editing strategy at the cluster specific linker-associated sequences by CRISPR-Cas9
Yang Zhang, Fei He, Yanning Zhang, Qian Dai, Qintong Li, Jing Nan, Ruidong Miao & Bo Cheng
Additional file 12 Supplementary Table 4. Expression profile for mouse KRAB-Zfps in various types and tissue types (information for Fig. 2).
Additional file 2 of Understanding of bacterial lignin extracellular degradation mechanisms by Pseudomonas putida KT2440 via secretomic analysis
Zhangyang Xu, Bo Peng, Reta Birhanu Kitata, Carrie D. Nicora, Karl K. Weitz, Yunqiao Pu, Tujin Shi, John R. Cort, Arthur J. Ragauskas & Bin Yang
Additional file 2: Table S4. Proteomic analysis of the intracellular and secretome in P. putida KT2440.
Expanding agroforestry can increase nitrate retention and mitigate the global impact of a leaky nitrogen cycle in croplands
Ahmed Elrys, Yves Uwiragiye, Yanhui Zhang, Mohamed K. Abdel-Fattah, Zhao-xiong Chen, Hui-min Zhang, Lei Meng, Jing Wang, Tong-bin Zhu, Yi Cheng, Jin-bo Zhang, Zu-cong Cai, Scott X. Chang & Christoph Müller
Source_Data_Figure_2 and 3
Additional file 1 of Physcomitrium patens CAD1 has distinct roles in growth and resistance to biotic stress
Shan Jiang, Xu Tian, Xiaolong Huang, Jiankang Xin & Huiqing Yan
Supplementary Material 1
Additional file 2 of Physcomitrium patens CAD1 has distinct roles in growth and resistance to biotic stress
Shan Jiang, Xu Tian, Xiaolong Huang, Jiankang Xin & Huiqing Yan
Supplementary Material 2
Additional file 8 of Physcomitrium patens CAD1 has distinct roles in growth and resistance to biotic stress
Shan Jiang, Xu Tian, Xiaolong Huang, Jiankang Xin & Huiqing Yan
Supplementary Material 8
Additional file 3 of RBCK1 is an endogenous inhibitor for triple negative breast cancer via hippo/YAP axis
Zhongbo Li, Peng Su, Yinlu Ding, Honglei Gao, Huijie Yang, Xin Li, Xiao Yang, Yan Xia, Chenmiao Zhang, Mingxi Fu, Dehai Wang, Ye Zhang, Shu Zhuo, Jian Zhu & Ting Zhuang
Additional file 2. Clinicopathological Data for 40 TNBC.
Additional file 4 of RBCK1 is an endogenous inhibitor for triple negative breast cancer via hippo/YAP axis
Zhongbo Li, Peng Su, Yinlu Ding, Honglei Gao, Huijie Yang, Xin Li, Xiao Yang, Yan Xia, Chenmiao Zhang, Mingxi Fu, Dehai Wang, Ye Zhang, Shu Zhuo, Jian Zhu & Ting Zhuang
Additional file 3. Digital raw data.
Affiliations
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Southern Medical University1,081
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Chinese Academy of Medical Sciences & Peking Union Medical College690
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Zhejiang University644
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Shanghai Jiao Tong University611
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Capital Medical University602
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Sichuan University590
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Huazhong University of Science and Technology564
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Sun Yat-sen University543
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Chinese Academy of Sciences482
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Fudan University474