Data from: Adaptation of Drosophila to a novel laboratory environment reveals temporally heterogeneous trajectories of selected allelesPablo Orozco-TerWengel, Martin Kapun, Viola Nolte, Robert Kofler, Thomas Flatt & Christian Schlötterer
The genomic basis of adaptation to novel environments is a fundamental problem in evolutionary biology that has gained additional importance in the light of the recent global change discussion. Here, we combined laboratory natural selection (experimental evolution) in Drosophila melanogaster with genome-wide next generation sequencing of DNA pools (Pool-Seq) to identify alleles that are favourable in a novel laboratory environment and traced their trajectories during the adaptive process. Already after 15 generations, we identified a...
We considered genome-wide four-fold degenerate sites from an African Drosophila melanogaster population and compared them to short introns. To include divergence and to polarize the data, we used its close relatives Drosophila simulans, Drosophila sechellia, Drosophila erecta and Drosophila yakuba as outgroups. In D. melanogaster, the GC content at four-fold degenerate sites is higher than in short introns; compared to its relatives, more AT than GC is fixed. The former has been explained by codon...
Data from: Evolution of eye morphology and rhodopsin expression in the Drosophila melanogaster species subgroupNico Posnien, Corinna Hopfen, Maarten Hilbrant, Margarita Ramos-Womack, Sophie Murat, Anna Schönauer, Samantha L. Herbert, Maria D. S. Nunes, Saad Arif, Casper J. Breuker, Christian Schlötterer, Philipp Mitteroeker, Alistair P. McGregor & Philipp Mitteroecker
A striking diversity of compound eye size and shape has evolved among insects. The number of ommatidia and their size are major determinants of the visual sensitivity and acuity of the compound eye. Each ommatidium is composed of eight photoreceptor cells that facilitate the discrimination of different colours via the expression of various light sensitive Rhodopsin proteins. It follows that variation in eye size, shape, and opsin composition is likely to directly influence vision. We...
Data from: Phylogeography, genetic structure and population divergence time of cheetahs in Africa and Asia: evidence for long-term geographic isolatesPauline Charruau, Carlos Fernandes, Pablo Orozco-TerWengel, Joris Peters, Luke Hunter, H. Ziaie, A. Jourabchian, H. Jowkar, Georges Schaller, Stephane Ostrowski, Paul Vercammen, Thierry Grange, Christian Schlötterer, Antoinette Kotze, Eva-Maria Geigl, Chris Walzer & Pamela A. Burger
The cheetah (Acinonyx jubatus) has been described as a species with low levels of genetic variation. This has been suggested to be the consequence of a demographic bottleneck 10 000–12 000 years ago (ya) and also led to the assumption that only small genetic differences exist between the described subspecies. However, analysing mitochondrial DNA and microsatellites in cheetah samples from most of the historic range of the species we found relatively deep phylogeographic breaks between...
Data from: The relation between the neutrality index for mitochondrial genes and the distribution of mutational effects on fitnessAndrea J. Betancourt, Bernardo Blanco-Martin & Brian Charlesworth
We explore factors affecting patterns of polymorphism and divergence (as captured by the neutrality index) at mammalian mitochondrial loci. To do this, we develop a population genetic model that incorporates a fraction of neutral amino acid sites, mutational bias, and a probability distribution of selection coefficients against new nonsynonymous mutations. We confirm, by reanalyzing publicly available data sets, that the mitochondrial cyt-b gene shows a broad range of neutrality indices across mammalian taxa, and explore...
University of Veterinary Medicine Vienna5
University of Lisbon1
University of Edinburgh1
Wildlife Conservation Society1
French National Centre for Scientific Research1
University of Vienna1
Oxford Brookes University1
Ludwig Maximilian University of Munich1
Panthera Biopartners (United States)1