648 Works

Data from: Molecular data and ecological niche modeling reveal the Pleistocene history of a semi-aquatic bug (Microvelia douglasi douglasi) in East Asia

Zhen Ye, Gengping Zhu, Pingping Chen, Danli Zhang & Wenjun Bu
This study investigated the Pleistocene history of a semi-aquatic bug, Microvelia douglasi douglasi Scott, 1874 (Hemiptera: Veliidae) in East Asia. We used M. douglasi douglasi as a model species to explore the effects of historical climatic fluctuations on montane semi-aquatic invertebrate species. Two hypotheses were developed using ecological niche models (ENM). First, we hypothesized that M. douglasi douglasi persisted in suitable habitats in southern Guizhou, southern Yunnan, Hainan, Taiwan and southeast China during the LIG....

Data from: Pleistocene sea level fluctuation and host plant habitat requirement influenced the historical phylogeography of the invasive species Amphiareus obscuriceps (Hemiptera: Anthocoridae) in its native range

Danli Zhang, Zhen Ye, Kazutaka Yamada, Yahui Zhen, Chenguang Zheng & Wenjun Bu
Background: On account of repeated exposure and submergence of the East China Sea (ECS) land bridge, sea level fluctuation played an important role in shaping the population structure of many temperate species across the ECS during the glacial period. The flower bug Amphiareus obscuriceps (Poppius, 1909) (Hemiptera: Anthocoridae) is an invasive species native to the Sino-Japanese Region (SJR) of East Asia. We tested the hypothesis of the ECS land bridge acting as a dispersal corridor...

Is SARS-CoV-2 originated from laboratory? A rebuttal to the claim of formation via laboratory recombination

Pei Hao, Wu Zhong, Shiyang Song, Shiyong Fan & Xuan Li
Is SARS-CoV-2 originated from laboratory? A rebuttal to the claim of formation via laboratory recombination

Data from: Shrubs facilitate recruitment of Caragana stenophylla Pojark: microhabitat amelioration and protection against herbivory

Li-Na Xie, Hong-Yu Guo, Zhe Liu, Christopher A Gabler, Wei-Zhong Chen, Song Gu & Cheng-Cang Ma
Key message: Mature Caragana stenophylla shrubs facilitated intraspecific sapling establishment by two mechanisms: microhabitat amelioration and protection against herbivory. Facilitation was mediated by climate, grazing and sapling age. Context: Pre-existing shrubs could facilitate sapling establishment of woody plants, however, how these facilitation vary across abiotic and biotic stress gradients and the underlying mechanisms remain unclear. Aims: The aim of this study is understanding the facilitation of shrub on sapling establishment, and how the two underlying...

The novel outer membrane protein from OprD/Occ family is associated with hypervirulence of carbapenem resistant Acinetobacter baumannii ST2/KL22

Mingxi Hua, Jingyuan Liu, Pengcheng Du, Xinzhe Liu, Min Li, Huizhu Wang, Chen Chen, Xinmin Xu, Yu Jiang, Yajie Wang, Hui Zeng & Ang Li
Acinetobacter baumannii has become a major healthcare threat that causes nosocomial infections, especially in critically ill patients. The spread of carbapenem resistant A. baumannii (CRAB) strains has long been a clinical concern. It is important to study the epidemiology and virulence characteristics of different CRAB isolates in order to tailor infection prevention and antibiotic prescribing. In this study, a total of 71 CRAB isolates were collected in the hospital, and clinical characteristics of infections were...

IncRNA ZFAS1 contributes to the radioresistance of nasopharyngeal carcinoma cells by sponging hsa-miR-7-5p to upregulate ENO2

Jiaojiao Peng, Feng Liu, Hong Zheng, Qi Wu & Shixi Liu
Previous research revealed that lncRNA ZFAS1 could promote nasopharyngeal carcinoma (NPC) by inhibiting its downstream target axis. However, the association between ZFAS1 and radioresistant NPC cells is unclear. This study aimed to explore the roles of ZFAS1 in the radioresistance of NPC. Bioinformatics analysis was conducted to identify the significant factors (ENO2 and miR-7-5p) that contributed to the radioresistance of NPC cells. After performing qRT-PCR analysis, we found that the expression of ZFAS1 and ENO2...

Data mining and network analysis reveals C-X-C chemokine receptor type 5 is involved in the pathophysiology of age-related macular degeneration

Madhu Sudhana Saddala, Anton Lennikov, Anthony Mukwaya, Xu Yang, Shibo Tang & Hu Huang
Our previous studies found that the C-X-C motif chemokine receptor 5 (CXCR5) loss leads to retinal pigment epithelium (RPE) dysfunction and AMD pathogenesis. The current study aimed to characterize the G protein-coupled receptor (GPCR) structure of CXCR5 and analyze its interactions with AMD-related risk genes. The sequence alignments, homology model of CXCR5 and structural assessment analysis were performed. Data and text mining were then performed to identify AMD-related risk genes and their interaction with CXCR5...

hypothyroidism during pregnancy and SIBO

Miao Zhang
妊娠期甲状腺功能低下和SIBO

Evidence that the second human pegivirus (HPgV-2) is primarily a lymphotropic virus and can replicate independent of HCV replication

Zhengwei Wan, Junwei Liu, Fengyu Hu, Jingwei Shui, Linghua Li, Haiying Wang, Xiaoping Tang, Chengguang Hu, Yuanhao Liang, Yuanping Zhou, Weiping Cai & Shixing Tang
The second human pegivirus HPgV-2 is a novel blood-borne virus that is strongly associated with the hepatitis C virus (HCV) infection. However, the molecular evidence for their association as well as the natural history and tissue tropism of HPgV-2 remain to be elucidated. In this longitudinal study, a total of 753 patients including 512 HIV-1 and HCV co-infected patients were enrolled to characterize the natural history of HPgV-2 infection. Peripheral blood mononuclear cells (PBMCs) and...

Additional file 1 of Temporal expression study of miRNAs in the crown tissues of winter wheat grown under natural growth conditions

Menglei Wang, Chenhui Yang, Kangning Wei, Miao Zhao, Liqiang Shen, Jie Ji, Li Wang, Daijing Zhang, Junqiang Guo, Yun Zheng, Juanjuan Yu, Mo Zhu, Haiying Liu & Yong-Fang Li
Additional file 1: Table S1. Expression of known miRNAs identified in wheat crown tissues.

Additional file 3 of Temporal expression study of miRNAs in the crown tissues of winter wheat grown under natural growth conditions

Menglei Wang, Chenhui Yang, Kangning Wei, Miao Zhao, Liqiang Shen, Jie Ji, Li Wang, Daijing Zhang, Junqiang Guo, Yun Zheng, Juanjuan Yu, Mo Zhu, Haiying Liu & Yong-Fang Li
Additional file 3: Table S2. Expression of wheat new miRNAs in crown tissues.

Additional file 5 of Temporal expression study of miRNAs in the crown tissues of winter wheat grown under natural growth conditions

Menglei Wang, Chenhui Yang, Kangning Wei, Miao Zhao, Liqiang Shen, Jie Ji, Li Wang, Daijing Zhang, Junqiang Guo, Yun Zheng, Juanjuan Yu, Mo Zhu, Haiying Liu & Yong-Fang Li
Additional file 5: Table S4. Expression of differentially expressed miRNAs in wheat crown tissues.

Additional file 5 of Temporal expression study of miRNAs in the crown tissues of winter wheat grown under natural growth conditions

Menglei Wang, Chenhui Yang, Kangning Wei, Miao Zhao, Liqiang Shen, Jie Ji, Li Wang, Daijing Zhang, Junqiang Guo, Yun Zheng, Juanjuan Yu, Mo Zhu, Haiying Liu & Yong-Fang Li
Additional file 5: Table S4. Expression of differentially expressed miRNAs in wheat crown tissues.

Transcriptome profiling revealed heat stress-responsive genes in Arabidopsis through integrated bioinformatics analysis

Meili Guo, Xin Liu, Jiahui Wang, Yusu Jiang, Jinhuan Yu & Jing Gao
Heat stress is an environmental challenge that reduces plant productivity and growth. Plants have developed corresponding mechanisms to survive this adverse environmental stress. To demonstrate the mechanisms of how plants adapt to the environmental challenge, the heat response experiments involving Arabidopsis thaliana were retrieved from the GEO database. After quantile normalization of the GEO raw data, the differentially expressed genes (DEGs) in response to heat stress were identified by robust rank aggregation (RRA) algorithm, including...

Seroprevalence of human brucellosis and molecular characteristics of Brucella strains in Inner Mongolia Autonomous region of China, from 2012 to 2016

Zhi-guo Liu, Miao Wang, Na Ta, Meng-gang Fang, Jing-chuan Mi, Rui-ping Yu, Yao Luo, Xiaoan Cao & Zhen-jun Li
In the present study, a total of 1102304 serum samples were collected to detected human brucellosis between the years 2012 and 2016 in Inner Mongolia. Overall, an average of 3.79% anti-Brucella positive in Inner Mongolia was presented but the range of positive rates were among 0.90 to 7.07% in 12 regions. Seroprevalence of human brucellosis increased gradually from 2012 to 2016. However, the incidence rate of human brucellosis showed a declining trend. One hundred and...

Transcriptomic insights into the regulatory networks of chilling-induced early flower in tobacco (Nicotiana tabacum L.)

Guoyun Xu, Wuxia Guo, Zunqiang Li, Chen Wang, Yalong Xu, Jingjing Jin, Huina Zhou & Shulin Deng
Appropriate timing of flowering is pivotal for tobacco, while chilling stress occurring at the seedling stage often undesirably leads to early flowering. However, the potential mechanism underlying chilling-induced early flowering remains unknown. Here, transcriptome sequencing was performed in tobacco with or without chilling at both seedling and budding stages. Chilling affected the expression of numerous genes at the seedling stage, while these dramatic expression changes were largely eliminated at the budding stage. A small number...

Binary mixing of lithospheric mantle and asthenosphere beneath Tengchong volcano, SE Tibet: evidence from noble gas isotopic signatures

Kefei Chen, Huaiyu He, Finlay Stuart, Shaolin Liu, Xiwei Xu, Zhihui Cheng, Dinghui Yang, Jiyong Li, Fei Su & Wenshuai Wang
The Miocene–Quaternary Tengchong volcanic field in SE Tibet was generated after the main stage of continental collision between India and Eurasia. Consensus on the origin of Tengchong volcanism has not yet been achieved. In this study, we analysed the He-Ar isotopic compositions of olivine and pyroxene phenocrysts, whole-rock major and trace elements and Sr-Nd-Pb isotopic compositions. The 3He/4He ratios range from 4.1 to 8.2 Ra (Ra = 1.4 × 10−6), overlapping the values of mid-ocean...

Binary mixing of lithospheric mantle and asthenosphere beneath Tengchong volcano, SE Tibet: evidence from noble gas isotopic signatures

Kefei Chen, Huaiyu He, Finlay Stuart, Shaolin Liu, Xiwei Xu, Zhihui Cheng, Dinghui Yang, Jiyong Li, Fei Su & Wenshuai Wang
The Miocene–Quaternary Tengchong volcanic field in SE Tibet was generated after the main stage of continental collision between India and Eurasia. Consensus on the origin of Tengchong volcanism has not yet been achieved. In this study, we analysed the He-Ar isotopic compositions of olivine and pyroxene phenocrysts, whole-rock major and trace elements and Sr-Nd-Pb isotopic compositions. The 3He/4He ratios range from 4.1 to 8.2 Ra (Ra = 1.4 × 10−6), overlapping the values of mid-ocean...

Identification of key genes and miRNA-mRNA regulatory networks associated with bone marrow immune microenvironment regulations in multiple myeloma by integrative bioinformatics analysis

Niluopaer Tuerxun, Jie Wang, Yu-ting Qin, Fang Zhao, Huan Wang, Jian-hua Qu, Md. Nazim Uddin & Jian-ping Hao
The deregulation of microRNAs (miRNAs) and genes in the bone marrow microenvironment have been involved with the pathogenesis of multiple myeloma (MM). However, the exploration of miRNA-mRNA regulatory networks in MM remains lacking. We used GSE125363, GSE125361, GSE47552, GSE2658, GSE136324, GSE16558, and GSE13591 datasets for this bioinformatics study. We identified 156 downregulated and 13 upregulated differentially expressed miRNAs (DEmiRs) in MM. The DEmiRs are associated with the enrichment of pathways mainly involved with cancers, cellular...

sj-xlsx-5-tct-10.1177_15330338221124658 - Supplemental material for In Vitro and in Vivo Study of the Effect of Osteogenic Pulsed Electromagnetic Fields on Breast and Lung Cancer Cells

Mike Y. Chen, Jing Li, Nianli Zhang, Erik I. Waldorff, James T. Ryaby, Philip Fedor, Yongsheng Jia & Yujun Wang
Supplemental material, sj-xlsx-5-tct-10.1177_15330338221124658 for In Vitro and in Vivo Study of the Effect of Osteogenic Pulsed Electromagnetic Fields on Breast and Lung Cancer Cells by Mike Y. Chen, Jing Li, Nianli Zhang and Erik I. Waldorff, James T. Ryaby, Philip Fedor, Yongsheng Jia, Yujun Wang in Technology in Cancer Research & Treatment

Additional file 1 of Circulating tumor DNA integrating tissue clonality detects minimal residual disease in resectable non-small-cell lung cancer

Siwei Wang, Ming Li, Jingyuan Zhang, Peng Xing, Min Wu, Fancheng Meng, Feng Jiang, Jie Wang, Hua Bao, Jianfeng Huang, Binhui Ren, Mingfeng Yu, Ninglei Qiu, Houhuai Li, Fangliang Yuan, Zhi Zhang, Hui Jia, Xinxin Lu, Shuai Zhang, Xiaojun Wang, Youtao Xu, Wenjia Xia, Tongyan Liu, Weizhang Xu, Xinyu Xu … & Rong Yin
Additional file 1. Table S1: Patient demography.

Additional file 8 of Genome-wide identification and characterization of lncRNAs in sunflower endosperm

Shuai Yu, Zhichao Zhang, Jing Li, Yanbin Zhu, Yanzhe Yin, Xiaoyu Zhang, Yuxin Dai, Ao Zhang, Cong Li, Yanshu Zhu, Jinjuan Fan, Yanye Ruan & Xiaomei Dong
Additional file 8: Table S4. The summary of imprinted lncRNA identified in 12 DAP sunflower endosperm.

Testing Biased Randomization Assumptions and Quantifying Imperfect Matching and Residual Confounding in Matched Observational Studies

Kan Chen, Siyu Heng, Qi Long & Bo Zhang
One central goal of design of observational studies is to embed nonexperimental data into an approximate randomized controlled trial using statistical matching. Despite empirical researchers’ best intention and effort to create high-quality matched samples, residual imbalance due to observed covariates not being well matched often persists. Although statistical tests have been developed to test the randomization assumption and its implications, few provide a means to quantify the level of residual confounding due to observed covariates...

Pyrite oxidation under carbonate buffer and its environmental implications: a case study from the Shangmanggang gold deposit, southwest China

Yanyan Wang, Xuemin Liu & Qi Li
Supplement 2

Additional file 10 of Genome-wide identification and characterization of lncRNAs in sunflower endosperm

Shuai Yu, Zhichao Zhang, Jing Li, Yanbin Zhu, Yanzhe Yin, Xiaoyu Zhang, Yuxin Dai, Ao Zhang, Cong Li, Yanshu Zhu, Jinjuan Fan, Yanye Ruan & Xiaomei Dong
Additional file 10: Table S5. The summary of lncRNAs exhibiting allele-specific expression in cultivated sunflower lines for edible fruit and oil identified in 12 DAP sunflower endosperm.

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