4 Works

Data from: Repeated land mass reformation limits diversification in the widespread littoral zone mosquito Anopheles sundaicus sensu lato in the Indo-Oriental Region

Magdalena Zarowiecki, Yvonne-Marie Linton, Rory J. Post, Michael J. Bangs, Pe Than Htun, Thaung Hlaing, Chang Moh Seng, Visut Baimai, Trung Ho Ding, Tho Sochantha & Catherine Walton
Southeast Asia harbours abundant biodiversity, hypothesized to have been generated by Pliocene and Pleistocene climatic and environmental change. Vicariance between the island of Borneo, the remaining Indonesian archipelago and mainland Southeast Asia caused by elevated sea levels during interglacial periods has been proposed to lead to diversification in the littoral zone mosquito Anopheles (Cellia) sundaicus (Rodenwaldt) sensu lato. To test this biogeographical hypothesis, we inferred the population history and assessed gene flow of A. sundaicus...

Data from: Two-phase importance sampling for inference about transmission trees

Elina Numminen, Claire Chewapreecha, Jukka Sirén, Claudia Turner, Paul Turner, Stephen D. Bentley, Jukka Corander & J. Siren
There has been growing interest in the statistics community to develop methods for inferring transmission pathways of infectious pathogens from molecular sequence data. For many datasets, the computational challenge lies in the huge dimension of the missing data. Here, we introduce an importance sampling scheme in which the transmission trees and phylogenies of pathogens are both sampled from reasonable importance distributions, alleviating the inference. Using this approach, arbitrary models of transmission could be considered, contrary...

Data from: Vitamin D status among Thai school children and the association with 1,25-dihydroxyvitamin D and parathyroid hormone levels

Lisa A. Houghton, Andrew R. Gray, Michelle J. Harper, Pattanee Winichagoon, Tippawan Pongcharoen, Sueppong Gowachirapant & Rosalind S. Gibson
In several low latitude countries, vitamin D deficiency is emerging as a public health issue. Adequate vitamin D is essential for bone health in rapidly growing children. In the Thai population, little is known about serum 25-hydroxyvitamin D [25(OH)D] status of infants and children. Moreover, the association between 25(OH)D and the biological active form of 1,25-dihydroxyvitamin D [1,25(OH)]2D is not clear. The specific aims of this study were to characterize circulating serum 25(OH)D, 1,25(OH)2D and...

Data from: Host-parasite network structure is associated with community-level immunogenetic diversity

Shai Pilosof, Miguel A. Fortuna, Jean-François Cosson, Maxime Galan, Chaisiri Kittipong, Alexis Ribas, Eran Segal, Boris R. Krasnov, Serge Morand & Jordi Bascompte
Genes of the major histocompatibility complex (MHC) encode proteins that recognize foreign antigens and are thus crucial for immune response. In a population of a single host species, parasite-mediated selection drives MHC allelic diversity. However, in a community-wide context, species interactions may modulate selection regimes because the prevalence of a given parasite in a given host may depend on its prevalence in other hosts. By combining network analysis with immunogenetics, we show that host species...

Registration Year

  • 2014
    4

Resource Types

  • Dataset
    4

Affiliations

  • Mahidol University
    4
  • Wellcome Trust
    2
  • University of Otago
    1
  • Smithsonian Institution
    1
  • Department of Health
    1
  • University of Manchester
    1
  • Spanish National Research Council
    1
  • Cambodia National Malaria Center
    1
  • University of Helsinki
    1
  • Liverpool John Moores University
    1