13 Works

Nested whole-genome duplications coincide with diversification and high morphological disparity in Brassicaceae

Marcus Koch, Nora Walden, Dmitry German, Eva Wolf, Markus Kiefer, Philippe Rigault, Xiao-Chen Huang, Christiane Kiefer, Roswitha Schmickl, Andreas Franzke, Klaus Mummenhoff & Barbara Neuffer
Angiosperms have become the dominant terrestrial plant group by diversifying for ~145 million years into a broad range of environments. During the course of evolution, numerous morphological innovations arose, often preceded by whole genome duplications (WGD). The mustard family (Brassicaceae), a successful angiosperm clade with ~4000 species, has been diversifying into many evolutionary lineages for more than 30 million years. Here we develop a species inventory, analyze morphological variation, and present a maternal, plastome-based genus-level...

Nucleotide alignments of eight meiosis genes under extreme selection following whole genome duplication in Arabidopsis lyrata/A.arenosa.

Paul Seear, Martin France, Catherine Gregory, Darren Heavens, Roswitha Schmickl, Levi Yant & James Higgins
In this study we performed a genotype-phenotype association analysis of meiotic stability in ten autotetraploid Arabidopsis lyrata and A. lyrata/A. arenosa hybrid populations collected from the Wachau region and East Austrian Forealps. The aim was to determine the effect of eight meiosis genes under extreme selection upon adaptation to whole genome duplication. Individual plants were genotyped by high-throughput sequencing of the eight meiosis genes (ASY1, ASY3, PDS5b, PRD3, REC8, SMC3, ZYP1a/b) implicated in synaptonemal complex...

Determinate growth is predominant and likely ancestral in squamate reptiles

Petra Frýdlová, Jana Mrzílková, Martin Šeremeta, Jan Křemen, Jan Dudák, Jan Žemlička, Bernd Minnich, Kristina Kverková, Pavel Němec, Petr Zach & Daniel Frynta
Body growth is typically thought to be indeterminate in ectothermic vertebrates. Indeed, until recently, this growth pattern was considered to be ubiquitous in ectotherms. Our recent observations of a complete growth plate cartilage (GPC) resorption, a reliable indicator of arrested skeletal growth, in many species of lizards clearly reject the ubiquity of indeterminate growth in reptiles and raise the question about the ancestral state of the growth pattern. Using X-ray micro-computed tomography (µCT), here we...

Data from: Plant-soil feedback contributes to predicting plant invasiveness of 68 alien plant species differing in invasive status

Anna Aldorfová, Pavlína Knobová & Zuzana Münzbergová
Understanding what species characteristics allow some alien plants to become invasive while others fail is critical to our understanding of community assembly processes. While many characteristics have been shown to predict plant invasiveness, the importance of plant-soil feedback (PSF) in invasions has been difficult to assess since individual studies include only a few species and use disparate methodology. We studied PSF of 68 invasive and non-invasive alien species in a single two-phase common garden experiment,...

Genetic diversity and connectivity of southern right whales (Eubalaena australis) found in the Brazil and Chile–Peru wintering grounds and the South Georgia (Islas Georgias del Sur) feeding ground

Emma L Carroll, Paulo Ott, Louise McMillan, Bárbara Galletti Vernazzani, Petra Neveceralova, Els Vermeulen, Oscar Gaggiotti, Artur Andriolo, C. Scott Baker, Connor Bamford, Peter Best, Elsa Cabrera, Susannah Calderan, Andrea Chirife, Rachel M. Fewster, Paulo A. C. Flores, Timothy Frasier, Thales R. O. Freitas, Karina Groch, Pavel Hulva, Amy Kennedy, Russell Leaper, Mathew S. Leslie, Michael Moore, Larissa Oliviera … & Jennifer A Jackson
As species recover from exploitation, continued assessments of connectivity and population structure are warranted to provide information for conservation and management. This is particularly true in species with high dispersal capacity, such as migratory whales, where patterns of connectivity could change rapidly. Here we build on a previous long-term, large-scale collaboration on southern right whales (Eubalaena australis) to combine new (nnew) and published (npub) mitochondrial (mtDNA) and microsatellite genetic data from all major wintering grounds...

Genomics of new ciliate lineages provides insight into the evolution of obligate anaerobiosis - single gene datasets for phylogenomic analysis of anaerobic ciliates (SAL, Ciliophora), protein datasets for mitochondrial pathways prediction, and mitochondrial genomes

Johana Rotterova, Eric Salomaki, Tomas Panek, William Bourland, David Zihala, Petr Taborsky, Virginia Edgcomb, Roxanne Beinart, Martin Kolisko & Ivan Cepicka
Oxygen plays a crucial role in energetic metabolism of most eukaryotes. Yet, adaptations to low oxygen concentrations leading to anaerobiosis have independently arisen in many eukaryotic lineages, resulting in a broad spectrum of reduced and modified mitochondrial organelles (MROs). In this study, we present the discovery of two new class-level lineages of free-living marine anaerobic ciliates, Muranotrichea, cl. nov. and Parablepharismea, cl. nov., that, together with the class Armophorea, form a major clade of obligate...

Data from: Functional traits determine why species belong to the dark diversity in a dry grassland fragmented landscape

Rocío Belinchón, Lucie Hemrová & Zuzana Münzbergová
A challenge for nature conservation is to know why many species are absent from suitable habitats and whether they might be able to disperse and to establish. Here, we used 272 dry grassland patches within a fragmented landscape to investigate the role of local abiotic conditions and dispersal filtering in determining the likelihood of vascular plants to belong to the dark diversity (i.e. absent portion of the species pool). First, we quantified the species (SD),...

Data from: The influence of climate variability on demographic rates of avian Afro-palearctic migrants

Jiri Reif, Tomáš Telenský, Petr Klvaňa, Miroslav Jelínek & Jaroslav Cepák
Climate is an important driver of changes in animal population size, but its effect on the underlying demographic rates remains insufficiently understood. This is particularly true for avian long-distance migrants which are exposed to different climatic factors at different phases of their annual cycle. To fill this knowledge gap, we used data collected by a national-wide bird ringing scheme for eight migratory species wintering in sub-Saharan Africa and investigated the impact of climate variability on...

Moose occurrence data in Bohemian Forest Ecosystem

Tomáš Janík, Marco Heurich, Wibke Peters, Martin Šálek, Dušan Romportl, Miloslav Jirků, Thomas Engleder, Martin Ernst & Jiří Neudert
This dataset contains all gathered spatial data for moose occurrence in our study area (see manuscript). In the table you can find these attributes: country of the occurrence, data quality according to SCALP classification, details about occurrence, coordinates for used S-JTSK (5514) reference system, locality and year of the record.

Data from: Competition among native and invasive Phragmites australis populations: an experimental test of the effects of invasion status, genome size, and ploidy level.

Petr Pyšek, Jan Čuda, Petr Šmilauer, Hana Skálová, Zuzana Chumová, Carla Lambertini, Magdalena Lučanová, Hana Ryšavá, Pavel Trávníček, Kristýna Šemberová & Laura Meyerson
Among the traits whose relevance for plant invasions has recently been suggested are genome size (the amount of nuclear DNA) and ploidy level. So far, research on the role of genome size in invasiveness has been mostly based on indirect evidence by comparing species with different genome sizes, but how karyological traits influence competition at the intraspecific level remains unknown. We addressed these questions in a common‐garden experiment evaluating the outcome of direct intraspecific competition...

Primary data on skull and brain morphology for: Geographical patterns in seasonal changes of body mass, skull, and brain size of common shrews

Javier Lázaro, Lucie Nováková, Moritz Hertel, Jan R. E. Taylor, Marion Muturi, Karol Zub & Dina K. N. Dechmann
Some small mammals exhibit Dehnel’s Phenomenon, a drastic decrease in body mass, braincase and brain size from summer to winter, followed by regrowth in spring. This is accompanied by a reorganization of the brain and changes in other organs. The evolutionary link between these changes and seasonality remains unclear, although the intensity of change varies between locations as the phenomenon is thought to lead to energy savings during winter. Here we explored geographic variation of...

Data from: Butterfly and moth communities differ in their response to habitat structure in rainforests of Mount Cameroon

Sylvain Delabye, Vincent Maicher, Szabolcs Sáfián, Jiří Doležal, Jan Altman, Štěpán Janeček, Ishmeal Kobe, Mercy Murkwe, Pavel Šebek & Robert Tropek
Mechanisms structuring tropical communities are still under-studied, especially in Afrotropical rainforests. Although insect herbivores are considered to depend on plant diversity, we hypothesized that vegetation structure, together with other microhabitat characteristics, can be more important for some insects. Here, we compared habitat associations of fruit-feeding butterflies and moths, two ecologically different groups of Lepidoptera, in three rainforest localities in foothills of Mount Cameroon, West/Central Africa. Based on a comprehensive dataset of 16,040 specimens of 398...

Novel immunoassay detecting p-Tau Thr217 distinguishes Alzheimer’s Disease from other dementias

Jozef Hanes, Andrej Kovac, Hlin Kvartsberg, Eva Kontsekova, Lubica Fialova, Stanislav Katina, Branislav Kovacech, Eva Stevens, Jakub Hort, Martin Vyhnalek, Lynn Boonkamp, Michal Novak, Henrik Zetterberg, Oskar Hansson, Philip Scheltens, Kaj Blennow, Charlotte E. Teunissen & Norbert Zilka
Objective To investigate whether p-tau T217 assay in cerebrospinal fluid (CSF) can distinguishes Alzheimer’s disease from other dementias and healthy controls. Methods We developed and validated a novel Simoa immunoassay to detect p-tau T217 in CSF. There was a total of 190 participants from three cohorts with AD (n = 77) and other neurodegenerative diseases (n = 69) as well as healthy subjects (n = 44). Results The p-tau T217 assay (cut-off 242 pg/ml) identified...

Registration Year

  • 2020
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Resource Types

  • Dataset
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Affiliations

  • Charles University
    13
  • Academy of Sciences of the Czech Republic
    4
  • University of Rhode Island
    2
  • University of South Bohemia in České Budějovice
    2
  • Woods Hole Oceanographic Institution
    2
  • Max Planck Institute for Ornithology
    1
  • Victoria University of Wellington
    1
  • University of Pretoria
    1
  • University of Ostrava
    1
  • Oregon State University
    1