100 Works

Data from: Environmentally induced dispersal-related life history syndrome in the tropical butterfly, Bicyclus anynana

Marjo Saastamoinen, Paul M. Brakefield & Otso Ovaskainen
Dispersal is a key process for understanding the persistence of populations as well as the capacity of organisms to respond to environmental change. Therefore understanding factors that may facilitate or constrain the evolution of dispersal is of crucial interest. Assessments of phenotypic variation in various behavioural, physiological and morphological traits related to insect dispersal and flight performance are common, yet very little is known about the genetic associations among these traits. We have used experiments...

Data from: Soil microbiome responses to the short-term effects of Amazonian deforestation

Acácio A. Navarrete, Siu M. Tsai, Lucas W. Mendes, Karoline Faust, Mattias De Hollander, Noriko A. Cassman, Johannes A. Van Veen, Eiko E. Kuramae & Jeroen Raes
Slash-and-burn clearing of forest typically results in increase in soil nutrient availability. However, the impact of these nutrients on the soil microbiome is not known. Using next generation sequencing of 16S rRNA gene and shotgun metagenomic DNA, we compared the structure and the potential functions of bacterial community in forest soils to deforested soils in the Amazon region and related the differences to soil chemical factors. Deforestation decreased soil organic matter content and factors linked...

Data from: Predator-prey interactions between shell-boring beetle larvae and rock-dwelling land snails

Els Baalbergen, Renate Helwerda, Rense Schelfhorst, Ruth F. Castillo Cajas, Coline H. M. Van Moorsel, Robin Kundrata, Francisco W. Welter-Schultes, Sinos Giokas & Menno Schilthuizen
Drilus beetle larvae (Coleoptera: Elateridae) are specialized predators of land snails. Here, we describe various aspects of the predator-prey interactions between multiple Drilus species attacking multiple Albinaria (Gastropoda: Clausiliidae) species in Greece. We observe that Drilus species may be facultative or obligate Albinaria-specialists. We map geographically varying predation rates in Crete, where on average 24% of empty shells carry fatal Drilus bore holes. We also provide first-hand observations and video-footage of prey entry and exit...

Data from: Female song is widespread and ancestral in songbirds

Karan J. Odom, Michelle L. Hall, Katharina Riebel, Kevin E. Omland & Naomi E. Langmore
Bird song has historically been considered an almost exclusively male trait, an observation fundamental to the formulation of Darwin’s theory of sexual selection. Like other male ornaments, song is used by male songbirds to attract females and compete with rivals. Thus, bird song has become a textbook example of the power of sexual selection to lead to extreme neurological and behavioural sex differences. Here we present an extensive survey and ancestral state reconstruction of female...

Data from: Sharp acoustic boundaries across an altitudinal avian hybrid zone despite asymmetric introgression

Wouter Halfwerk, Caroline Dingle, Dusan M. Brinkhuizen, Jelmer W. Poelstra, Jan Komdeur & Hans Slabbekoorn
Birdsong is a sexually selected trait that could play an important evolutionary role when related taxa come into secondary contact. Many songbird species however learn their songs through copying one or more tutors, which complicates the evolutionary outcome of such contact. Two subspecies of a presumed vocal learner, the grey-breasted wood-wren (Henicorhina leucophrys), replace each other altitudinally across the western slope of the Ecuadorian Andes. These subspecies are morphologically very similar, but show striking differences...

Data from: The effect of atomoxetine on random and directed exploration in humans

Christopher M. Warren, Robert C. Wilson, Nic J. Van Der Wee, Eric J. Giltay, Martijn S. Van Noorden, Jonathan D. Cohen & Sander Nieuwenhuis
The adaptive regulation of the trade-off between pursuing a known reward (exploitation) and sampling lesser-known options in search of something better (exploration) is critical for optimal performance. Theory and recent empirical work suggest that humans use at least two strategies for solving this dilemma: a directed strategy in which choices are explicitly biased toward information seeking, and a random strategy in which decision noise leads to exploration by chance. Here we examined the hypothesis that...

Data from: Foraging efficiency and size matching in a plant – pollinator community: the importance of sugar content and tongue length

Saskia G.T. Klumpers, Martina Stang & Peter G.L. Klinkhamer
A longstanding question in ecology is how species interactions are structured within communities. Although evolutionary theory predicts close size matching between floral nectar tube depth and pollinator proboscis length of interacting species, such size matching has seldom been shown and explained in multispecies assemblages. Here, we investigated the degree of size matching among Asteraceae and their pollinators and its relationship with foraging efficiency. The majority of pollinators, especially Hymenoptera, choose plant species on which they...

Global biogeography of fungal and bacterial biomass carbon in topsoil

Liyuan He, Jorge Rodrigues, Nadejda Soudzilovskaia, Milagros Barceló, Pål Axel Olsson, Changchun Song, Leho Tedersoo, Fenghui Yuan, Fengming Yuan, David Lipson & Xiaofeng Xu
Bacteria and fungi, representing two major soil microorganism groups, play an important role in global nutrient biogeochemistry. Biogeographic patterns of bacterial and fungal biomass are of fundamental importance for mechanistically understanding nutrient cycling. We synthesized 1323 data points of phospholipid fatty acid-derived fungal biomass C (FBC), bacterial biomass C (BBC), and fungi:bacteria (F:B) ratio in topsoil, spanning 11 major biomes. The FBC, BBC, and F:B ratio display clear biogeographic patterns along latitude and environmental gradients...

Spatial patterns and ecological drivers of soil nematode β-diversity in natural grasslands vary among vegetation types and trophic position

Dan Xiong, Cunzheng Wei, Xugao Wang, Xiaotao Lü, Shuai Fang, Yingbin Li, Xiaobo Wang, Wenju Liang, Xingguo Han, T. Martijn Bezemer & Qi Li
1. Understanding biogeographic patterns of community assemblages is a core objective in ecology, but for soil communities these patterns are poorly understood. To understand the spatial patterns and underlying mechanisms of β-diversity in soil communities, we investigated the β-diversity of soil nematode communities along a 3200 km transect across semi-arid and arid grasslands. 2. Spatial turnover and nested-resultant are the two fundamental components of β-diversity, which have been attributed to various processes of community assembly....

Data from: Foraging zebra finches (Taeniopygia guttata) are public information users rather than conformists

Edwin J. C. Van Leeuwen, Thomas Morgan & Katharina Riebel
Social learning enables adaptive information acquisition provided that it is not random but selective. To understand species typical decision-making and to trace the evolutionary origins of social learning, the heuristics social learners use need to be identified. Here, we experimentally tested the nature of majority influence in the zebra finch. Subjects simultaneously observed two demonstrator groups differing in relative and absolute numbers (ratios 1:2 / 2:4 / 3:3 / 1:5) foraging from two novel food...

A matter of time: Recovery of plant species diversity in wild plant communities at declining nitrogen deposition

Frank Berendse, Rob Geerts, Wim Elberse, Martijn Bezemer, Paul Goedhart, Wei Xue, Erik Noordijk, Cajo Ter Braak & Hein Korevaar
Aim: High levels of nitrogen deposition have been responsible for important losses of plant species diversity. It is often assumed that reduction of ammonia and nitrogen oxide emissions will result in the recovery of the former biodiversity. In Western Europe N deposition peaked between 1980 and 1988 and declined thereafter. In a 60-year experiment in hay meadows we tested the hypothesis that increasing and declining nitrogen deposition had negative, respectively, positive effects on plant species...

Persistence of plant-mediated microbial soil legacy effects in soil and inside roots

Emilia Hannula, Robin Heinen, Martine Huberty, Katja Steinauer, Jonathan De Long, Renske Jongen & Martijn Bezemer
Plant-soil feedbacks are shaped by microbial legacies that plants leave in the soil. We tested the persistence of these legacies after subsequent colonization by the same or other plant species. Soil fungal legacies were detectable for months, but the current plant effect on fungi amplified in time. Contrary, in bacterial communities, legacies faded away rapidly and bacteria communities were influenced strongly by the current plant. However, both fungal and bacterial legacies were conserved inside the...

Improving estimations of life history parameters of small animals in mesocosm experiments: A case study on mosquitoes

Martha Dellar, Sam Boerlijst & David Holmes
We used an experimental setup with 48 aquatic mesocosms, each with twenty first instar mosquito (Culex pipiens) larvae and under one of twelve treatments with varying temperatures and nutrient concentrations. We took daily subsamples of the aquatic life stages as well as counting the emerging adults. We developed a method to estimate the survival and development probabilities at each life stage, based on optimising a matrix population model. We used two different approaches, one calculating...

Data from: Occasional males in parthenogenetic populations of Asobara japonica (Hymenoptera: Braconidae): low Wolbachia titer or incomplete co-adaptation?

Barbara M. Reumer, Jacques J. M. Van Alphen & Ken Kraaijeveld
Wolbachia are endosymbiotic bacteria known to manipulate the reproduction of their hosts. Some populations of the parasitoid wasp Asobara japonica are infected with Wolbachia and reproduce parthenogenetically, while other populations are not infected and reproduce sexually. Wolbachia infected A. japonica females regularly produce small numbers of male offspring. Because all females in the field are infected and infected females are not capable of sexual reproduction, male production seems to be maladaptive. We investigated why these...

Data from: Adaptability of large carnivores to changing anthropogenic food sources: diet change of spotted hyena (Crocuta crocuta) during Christian fasting period in northern Ethiopia

Gidey Yirga, Hans H. De Iongh, Herwig Leirs, Kindeya Gebrihiwot, Jozef Deckers & Hans Bauer
Many large carnivores readily use anthropogenic food sources, which often leads to conflict. Spotted hyenas (Crocuta crocuta) around the regional capital Mekelle, northern Ethiopia, feed on waste and to a lesser degree on livestock, but not on natural prey. We investigated the impact on their diet of the 55 day fasting period prescribed by the Ethiopian Orthodox Tewahedo Church, during which the vast majority of people do not consume animal products. We collected spotted hyena...

Data from: Identification of glucose kinase dependent and independent pathways for carbon control of primary metabolism, development and antibiotic production in Streptomyces coelicolor by quantitative proteomics

Jacob Gubbens, Marleen Janus, Bogdan I. Florea, Hermen S. Overkleeft, Gilles P. Van Wezel & Herman S. Overkleeft
Members of the soil-dwelling prokaryotic genus Streptomyces are indispensable for the recycling of complex polysaccharides, and produce a wide range of natural products. Nutrient availability is a major determinant for the switch to development and antibiotic production in streptomycetes. Carbon catabolite repression (CCR), a main signaling pathway underlying this phenomenon, was so far considered fully dependent on the glycolytic enzyme glucose kinase (Glk). Here we provide evidence of a novel Glk-independent pathway in Streptomyces coelicolor,...

Data from: On the fate of seasonally plastic traits in a rainforest butterfly under relaxed selection

Vicencio Oostra, Paul M. Brakefield, Yvonne Hiltemann, Bas J. Zwaan & Oskar Brattström
Many organisms display phenotypic plasticity as adaptation to seasonal environmental fluctuations. Often, such seasonal responses entails plasticity of a whole suite of morphological and life-history traits that together contribute to the adaptive phenotypes in the alternative environments. While phenotypic plasticity in general is a well-studied phenomenon, little is known about the evolutionary fate of plastic responses if natural selection on plasticity is relaxed. Here, we study whether the presumed ancestral seasonal plasticity of the rainforest...

Data from: Long-term experimental warming alters community composition of ascomycetes in Alaskan moist and dry arctic tundra

Tatiana A. Semenova, Luis N. Morgado, Jeffrey M. Welker, Marilyn D. Walker, Erik Smets & József Geml
Arctic tundra regions have been responding to global warming with visible changes in plant community composition, including expansion of shrubs and declines in lichens and bryophytes. Even though it is well-known that the majority of arctic plants are associated with their symbiotic fungi, how fungal community composition will be different with climate warming remains largely unknown. In this study, we addressed the effects of long-term (18 years) experimental warming on the community composition and taxonomic...

Data from: Burn or rot: leaf traits explain why flammability and decomposability are decoupled across species

Saskia Grootemaat, Ian J. Wright, Peter M. Van Bodegom, Johannes H. C. Cornelissen & William K. Cornwell
In fire-prone ecosystems, two important alternative fates for leaves are burning in a wildfire (when alive or as litter) or they get consumed (as litter) by decomposers. The influence of leaf traits on litter decomposition rate is reasonably well understood. In contrast, less is known about the influence of leaf traits on leaf and litter flammability. The aim of this study was twofold: (a) to determine which morphological and chemical leaf traits drive flammability; and...

Data from: Efferocytosis and extrusion of leukocytes determine the progression of early mycobacterial pathogenesis

Rohola Hosseini, Gerda E.M. Lamers, Hiwa M. Soltani, Annemarie H. Meijer, Herman P. Spaink & Marcel J.M. Schaaf
Macrophages and neutrophils are the first responders to invading pathogens and contribute strongly to the host defense against intracellular pathogens. The collective interplay and dynamic interactions between these leukocytes are to a large extent not understood. In the present study, we have investigated their role using a combination of confocal laser-scanning and electron microscopy in a zebrafish model for tuberculosis, a local Mycobacterium marinum infection in the tissue of the larval tail fin. Our results...

Data from: Historical contingency in a multigene family facilitates adaptive evolution of toxin resistance

Joel McGlothlin, Megan Kobiela, Chris R. Feldman, Todd A. Castoe, Shana L. Geffeney, Charles T. Hanifin, Gabriela Toledo, Freek J. Vonk, Michael K. Richardson, , Michael Pfrender &
Novel adaptations must originate and function within an already established genome [ 1 ]. As a result, the ability of a species to adapt to new environmental challenges is predicted to be highly contingent on the evolutionary history of its lineage [ 2–6 ]. Despite a growing appreciation of the importance of historical contingency in the adaptive evolution of single proteins [ 7–11 ], we know surprisingly little about its role in shaping complex adaptations...

Data from: Drivers of plant traits that allow survival in wetlands

Yingji Pan, Ellen Cieraad, Bev Clarkson, Tim Colmer, Ole Pedersen, Eric Visser, Laurentius A.C.J. Voesenek & Peter Van Bodegom
Plants have developed a suite of traits to survive the anaerobic and anoxic soil conditions in wetlands. Previous studies on wetland plant adaptive traits have focused mainly on physiological aspects under experimental conditions, or compared the trait expression of the local species pool. Thus, a comprehensive analysis of potential factors driving wetland plant adaptive traits under natural environmental conditions is still missing. In this study, we analysed three important wetland adaptive traits, i.e. root porosity,...

Data from: Quantifying water requirements of African ungulates through a combination of functional traits

Michiel Veldhuis, Emilian Kihwele, Victor Mchomvu, Norman Owen-Smith, Robyn Hetem, Matthew Hutchinson, Arjun Potter & Han Olff
Climate and land use change modify surface water availability in African savannas. Surface water is a key resource for both wildlife and livestock and its spatial and temporal distribution is important for understanding the composition of large herbivore assemblages in savannas. Yet, the extent to which ungulate species differ in their water requirements remains poorly quantified. Here, we infer the water requirements of 48 African ungulates by combining six different functional traits related to physiological...

Antibiotic production in Streptomyces is organized by a division of labour through terminal genomic differentiation

Zheren Zhang, Chao Du, Frédérique De Barsy, Michael Liem, Apostolos Liakopoulos, Gilles P. Van Wezel, Young H. Choi, Dennis Claessen & Daniel E. Rozen
One of the hallmark behaviors of social groups is division of labour, where different group members become specialized to carry out complementary tasks. By dividing labour, cooperative groups of individuals increase their efficiency, thereby raising group fitness even if these specialized behaviors reduce the fitness of individual group members. Here we provide evidence that antibiotic production in colonies of the multicellular bacterium Streptomyces coelicolor is coordinated by a division of labour. We show that S....

Data from: The EGA+GNM framework: an integrative approach to modelling behavioural syndromes

Jordan S. Martin, Jorg J. M. Massen, Vedrana Šlipogor, Thomas Bugnyar, Adrian V. Jaeggi & Sonja E. Koski
1. Behavioural syndromes refer to correlated suites of behavioural traits exhibiting consistent among-individual variation, i.e. personality. Factor analysis (FA) is currently the dominant method for modelling behavioural syndromes in humans and animals. Although FA is useful for inferring the latent causes underlying trait correlations, it does not account for pairwise behavioural interactions that also contribute to syndrome structure. Given that latent factors and pairwise interactions are likely ubiquitous causes of trait covariation, both should be...

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  • Leiden University
  • Naturalis Biodiversity Center
  • VU University Amsterdam
  • Nederlands Instituut voor Ecologie
  • Wageningen University & Research
  • University of Groningen
  • University of Cambridge
  • Radboud University Nijmegen
  • Manchester Metropolitan University
  • University of Amsterdam