6 Works

Data from: Soil microbiome responses to the short-term effects of Amazonian deforestation

Acácio A. Navarrete, Siu M. Tsai, Lucas W. Mendes, Karoline Faust, Mattias De Hollander, Noriko A. Cassman, Johannes A. Van Veen, Eiko E. Kuramae & Jeroen Raes
Slash-and-burn clearing of forest typically results in increase in soil nutrient availability. However, the impact of these nutrients on the soil microbiome is not known. Using next generation sequencing of 16S rRNA gene and shotgun metagenomic DNA, we compared the structure and the potential functions of bacterial community in forest soils to deforested soils in the Amazon region and related the differences to soil chemical factors. Deforestation decreased soil organic matter content and factors linked...

Data from: Burn or rot: leaf traits explain why flammability and decomposability are decoupled across species

Saskia Grootemaat, Ian J. Wright, Peter M. Van Bodegom, Johannes H. C. Cornelissen & William K. Cornwell
In fire-prone ecosystems, two important alternative fates for leaves are burning in a wildfire (when alive or as litter) or they get consumed (as litter) by decomposers. The influence of leaf traits on litter decomposition rate is reasonably well understood. In contrast, less is known about the influence of leaf traits on leaf and litter flammability. The aim of this study was twofold: (a) to determine which morphological and chemical leaf traits drive flammability; and...

Data from: Climate impacts on trans-ocean dispersal and habitat in gray whales from the Pleistocene to 2100

S. Elizabeth Alter, Matthias Meyer, Klaas Post, Paul Czechowski, Peter Gravlund, Cork Gaines, Howard C. Rosenbaum, Kristin Kaschner, Samuel T. Turvey, Johannes Van Der Plicht, Beth Shapiro & Michael Hofreiter
Arctic animals face dramatic habitat alteration due to ongoing climate change. Understanding how such species have responded to past glacial cycles can help us forecast their response to today's changing climate. Gray whales are among those marine species likely to be strongly affected by Arctic climate change, but a thorough analysis of past climate impacts on this species has been complicated by lack of information about an extinct population in the Atlantic. While little is...

Data from: Fungal endophytes of Vanilla planifolia across Réunion Island: isolation, distribution and biotransformation.

Shahnoo Khoyratty, Joëlle Dupont, Sandrine Lacoste, Tony L. Palama, Young H. Choi, Hye K. Kim, Bertrand Payet, Michel Grisoni, Mireille Fouillaud, Robert Verpoorte & Hippolyte Kodja
Background The objective of the work was to characterize fungal endophytes from aerial parts of Vanilla planifolia. Also, to establish their biotransformation abilities of flavor-related metabolites. This was done in order to find a potential role of endophytes on vanilla flavors. Results Twenty three MOTUs were obtained, representing 6 fungal classes. Fungi from green pods were cultured on mature green pod based media for 30 days followed by 1H NMR and HPLC-DAD analysis. All fungi...

Data from: Global effects of soil and climate on leaf photosynthetic traits and rates

Vincent Maire, Ian J. Wright, I. Colin Prentice, Niels H. Batjes, Radika Bhaskar, Peter M. Van Bodegom, Will K. Cornwell, David Ellsworth, Ülo Niinemets, Alejandro Ordoñez, Peter B. Reich & Louis S. Santiago
Aim: The influence of soil properties on photosynthetic traits in higher plants is poorly quantified in comparison with that of climate. We address this situation by quantifying the unique and joint contributions to global leaf-trait variation from soils and climate. Location: Terrestrial ecosystems world-wide. Methods: Using a trait dataset comprising 1509 species from 288 sites, with climate and soil data derived from global datasets, we quantified the effects of 20 soil and 26 climate variables...

Data from: Mycorrhizal diversity, seed germination and long-term changes in population size across nine populations of the terrestrial orchid Neottia ovata

Hans Jacquemyn, Michael Waud, Vincent S. F. T. Merckx, Bart Lievens & Rein Brys
In plant species that rely on mycorrhizal symbioses for germination and seedling establishment, seedling recruitment and temporal changes in abundance can be expected to depend on fungal community composition and local environmental conditions. However, disentangling the precise factors that determine recruitment success in species that critically rely on mycorrhizal fungi represents a major challenge. In this study, we used seed germination experiments, 454 amplicon pyrosequencing and assessment of soil conditions to investigate the factors driving...

Registration Year

  • 2015

Resource Types

  • Dataset


  • Leiden University
  • VU University Amsterdam
  • Macquarie University
  • UNSW Sydney
  • KU Leuven
  • City University of New York
  • University of La Réunion
  • University of Adelaide
  • University of California System
  • Estonian University of Life Sciences