6 Works

Data from: Rapid and accurate taxonomic classification of insect (Class Insecta) cytochrome c oxidase subunit 1 (COI) DNA barcode sequences using a naïve Bayesian classifier

Joel F. Gibson, Shadi Shokralla, G. Brian Golding, Mehrdad Hajibabaei, Teresita M. Porter & Donald J. Baird
Current methods to identify unknown insect (class Insecta) cytochrome c oxidase (COI barcode) sequences often rely on difficult to define thresholds of distances, sequence similarity cutoffs, or monophyly. Most methods do not provide a measure of confidence for the taxonomic assignments they provide. The aim of this study is to use a naïve Bayesian classifier (Wang et al., 2007) to automate unsupervised taxonomic assignments for large batches of insect COI sequences such as data obtained...

Data from: Evolution of niche preference in Sphagnum peat mosses

Matthew G. Johnson, Gustaf Granath, Teemu Tahvanainen, Remy Pouliot, Hans K. Stenøien, Line Rochefort, Håkan Rydin & A. Jonathan Shaw
Peat mosses (Sphagnum) are ecosystem engineers— species in boreal peatlands simultaneously create and inhabit narrow habitat preferences along two microhabitat gradients: an ionic gradient and a hydrological hummock-hollow gradient. In this paper we demonstrate the connections between microhabitat preference and phylogeny in Sphagnum. Using a dataset of 39 species of Sphagnum, with an 18-locus DNA alignment and an ecological dataset encompassing three large published studies, we tested for phylogenetic signal and within-genus changes in evolutionary...

Data from: What is the primary function of the early teleost gill? Evidence for Na+/NH4+ exchange in developing rainbow trout (Oncorhynchus mykiss)

Alex M. Zimmer, Patricia A. Wright & Chris M. Wood
Post-hatch fishes lack a functional gill and use cutaneous surfaces for exchange with the surrounding environment. The ionoregulatory hypothesis posits that ionoregulation is the first physiological process to be limited by cutaneous exchange, necessitating its shift to the gills. We hypothesized that the ontogeny of branchial ammonia excretion (Jamm) is coupled to Na+ uptake (Graphic) in accordance with the current model for Graphic exchange in freshwater. Using divided chambers, branchial and cutaneous Jamm, Graphic and...

Data from: Familiarity affects social network structure and discovery of prey patch locations in foraging stickleback shoals

Nicola Atton, Bennett J. Galef, William Hoppitt, Mike M. Webster & Kevin N. Laland
Numerous factors affect the fine-scale social structure of animal groups, but it is unclear how important such factors are in determining how individuals encounter resources. Familiarity affects shoal choice and structure in many social fishes. Here, we show that familiarity between shoal members of sticklebacks (Gasterosteus aculeatus) affects both fine-scale social organization and the discovery of resources. Social network analysis revealed that sticklebacks remained closer to familiar than to unfamiliar individuals within the same shoal....

Data from: Phylogeography and evolution of a fungal-insect association on the Tibetan Plateau

Yongjie Zhang, Shu Zhang, Yuling Li, Shaoli Ma, Chengshu Wang, Meichun Xiang, Xin Liu, Zhiqiang An, Jianping Xu & Xingzhong Liu
Parasitoidism refers to a major form of inter-species interactions where parasitoids sterilize and/or kill their hosts typically before hosts reach reproductive age. However, relatively little is known about the evolutionary dynamics of parasitoidism. Here we investigate the spatial patterns of genetic variation of Chinese cordyceps, including both the parasitoidal fungus Ophiocordyceps sinensis and its host insects. We sampled broadly from alpine regions on the Tibetan Plateau and obtained sequences on seven fungal and three insect...

Data from: Carotenoid-based bill coloration functions as a social, not sexual, signal in songbirds (Aves: Passeriformes)

Cody J. Dey, Mihai Valcu, Bart Kempenaers & James Dale
Many animals use coloration to communicate with other individuals. While the signalling role of avian plumage colour is relatively well studied, there has been much less research on coloration in avian bare parts. However, bare parts could be highly informative signals as they can show rapid changes in coloration. We measured bill colour (a ubiquitous bare part) in over 1600 passerine species and tested whether interspecific variation in carotenoid-based coloration is consistent with signalling to...

Registration Year

  • 2014

Resource Types

  • Dataset


  • McMaster University
  • University of Guelph
  • Anglia Ruskin University
  • Max Planck Institute for Ornithology
  • Yunnan University
  • University of Eastern Finland
  • Duke University
  • Institute of Microbiology
  • University of St Andrews
  • Swedish University of Agricultural Sciences