101 Works

Data from: Genetic evidence for sexual reproduction and multiple infections of Norway spruce cones by the rust fungus Thekopsora areolata

Hernan Capador, Berit Samils, Juha Kaitera & Ake Olson
Rust fungi are obligate parasites of plants with complex and in many cases poorly known life cycles which may include host alteration and up to five spore types with haploid, diploid and dikaryotic nuclear stages. This study supports that Thekopasora areolata, the causal agent of cherry-spruce rust in Norway spruce, is a macrocyclic heteroecious fungus with all five spore stages which uses two host plants Prunus padus and Picea abies to complete its life cycle....

Life history genomic regions explain differences in Atlantic salmon marine diet specialization

Tutku Aykanat, Martin Rasmussen, Mikhail Ozerov, Eero Niemelä, Lars Paulin, Juha-Pekka Vaha, Kjetil Hindar, Vidar Wennevik, Torstein Pedersen, Martin Svenning & Craig Primmer
Abstract 1. Animals employ various foraging strategies along their ontogeny to acquire energy, and with varying degree of efficiencies, to support growth, maturation and subsequent reproduction events. Individuals that can efficiently acquire energy early are more likely to mature at an earlier age, as a result of faster energy gain which can fuel maturation and reproduction. 2. We aimed to test the hypothesis that heritable resource acquisition variation that co-varies with efficiency along the ontogeny...

Forest inventory data from Finland and Sweden for: Demographic performance of European tree species at their hot and cold climatic edges, plus ancillary climate data

Sophia Ratcliffe, Jonas Dahlgren, Aleksi Lehtonen, Christian Wirth, Paloma Ruiz-Benito, Miguel A. Zavala, Gerald Kaendler, Raisa Mäkipää & Georges Kunstler
1. Species range limits are thought to result from a decline in demographic performance at range edges. However, recent studies reporting contradictory patterns in species demographic performance at their edges cast doubt on our ability to predict climate change demographic impacts. To understand these inconsistent demographic responses at the edges, we need to shift the focus from geographic to climatic edges and analyse how species responses vary with climatic constraints at the edge and species’...

Temporal biodiversity change following disturbance varies along an environmental gradient

Elina Kaarlejärvi, Maija Salemaa, Tiina Tonteri, Päivi Merilä & Anna-Liisa Laine
Aim The diversity and composition of natural communities are rapidly changing due to anthropogenic disturbances. Magnitude of this compositional reorganization varies across the globe, but reasons behind the variation remain largely unknown. Disturbances induce temporal turnover by stimulating species colonizations, causing local extinctions, altering dominance structure, or all of these. We test which of these processes drive temporal community changes, and whether they are constrained by natural environmental gradients. Moreover, we assess to what degree...

A large wild salmon stock shows genetic and life history differentiation within, but not between, rivers

Antti Miettinen, Stefan Palm, Johan Dannewitz, Emma Lind, Craig R. Primmer, Atso Romakkaniemi, Johan Östergren & Victoria L. Pritchard
Anadromous salmonid fishes frequently exhibit strong geographic population structuring. However, population genetic differentiation of Atlantic salmon (Salmo salar) at fine geographic scales differs across equivalent spatial extents in different regions. So far, fine-scale genetic differentiation has not been assessed in rivers of the Baltic Sea, a region that contains an evolutionarily distinct Atlantic salmon lineage. Thus, Baltic salmon are currently managed on the river level, without focus on potential genetic structure and diversity within rivers....

Data from: Titmice are a better indicator of bird density in Northern European than in Western European forests

Mira H. Kajanus, Jukka T. Forsman, Maximilian G. R. Vollstädt, Vincent Devictor, Merja Elo, Aleksi Lehikoinen, Mikko Mönkkönen, James T. Thorson & Sami M. Kivelä
Population sizes of many birds are declining alarmingly and methods for estimating fluctuations in species’ abundances at a large spatial scale are needed. The possibility to derive indicators from the tendency of specific species to co-occur with others has been overlooked. Here we tested whether the abundance of resident titmice can act as a general ecological indicator of forest bird density in European forests. Titmice species are easily identifiable and have a wide distribution, which...

The role of terrestrial productivity in regulating aquatic dissolved organic carbon concentrations in boreal catchments

Xudan Zhu, Liang Chen, Jukka Pumpanen, Anne Ojala, John Zobitz, Xuan Zhou, Hjalmar Laudon, Marjo Palviainen, Kimmo Neitola & Frank Berninger
The past decades have witnessed an increase in dissolved organic carbon (DOC) concentrations in the catchments of the Northern Hemisphere. Increases in terrestrial productivity may be a reason for the increases in DOC concentration. The aim of this study is to investigate the impacts of increased terrestrial productivity and changed hydrology following climate change on DOC concentrations. We tested and quantified the effects of gross primary production (GPP), ecosystem respiration (RE) and discharge on DOC...

Data belonging to the article: Estimating pre-harvest density, adult sex ratio and fecundity of white-tailed deer using wildlife cameras

Jon Brommer, Jenni Poutanen, Jyrki Pusenius & Mikael Wikström
Adult sex ratio and fecundity (juveniles per female) are key population parameters in sustainable wildlife management, but inferring these requires abundance estimates of at least three age/sex classes of the population (male and female adults and juveniles). Prior to harvest, we used an array of 36 wildlife camera traps during 2 and 3 weeks in the early autumn of 2016 and 2017 respectively. We recorded white-tailed deer adult males, adult females and fawns from the...

Genotype data from: Restoration of transborder connectivity for Fennoscandian brown bears (Ursus arctos)

Alexander Kopatz, Kleven Oddmund, Kojola Ilpo, Aspi Jouni, Anita J. Norman, Göran Spong, Niclas Gyllenstrand, Love Dalén, Ida Fløystad, Snorre B. Hagen, Jonas Kindberg & Øystein Flagstad
Knowledge about the connectivity among natural populations is essential to identify management units for effective conservation actions. Conservation-minded management has led to the recovery of large carnivore populations in northern Europe, possibly restoring connectivity between the two separated, but expanding brown bear (Ursus arctos) populations on the Scandinavian peninsula to the west and Karelia, a part of the large Eurasian population, to the east. The degree of connectivity between these populations has been poorly understood,...

Data from: Genetic diversity and genomic signatures of selection among cattle breeds from Siberia, eastern and northern Europe

Terhi Iso-Touru, Miika Tapio, Johanna Vilkki, Tatyana Kiseleva, Innokentyi Ammosov, Zoya Ivanova, Ruslan Popov, Mikhail Ozerov & Juha Kantanen
Domestication in the near eastern region had a major impact on the gene pool of humpless taurine cattle (Bos taurus). As a result of subsequent natural and artificial selection, hundreds of different breeds have evolved, displaying a broad range of phenotypic traits. Here, 10 Eurasian B. taurus breeds from different biogeographic and production conditions, which exhibit different demographic histories and have been under artificial selection at various intensities, were investigated using the Illumina BovineSNP50 panel...

Data from: Origins of cattle on Chirikof Island, Alaska, elucidated from genome-wide SNP genotypes

Jared E. Decker, Jeremy F. Taylor, Leeson J. Alexander, Juha Kantanen, Ann Millbrooke, Robert D. Schnabel & Michael D. MacNeil
Feral livestock may harbor genetic variation of commercial, scientific, historical or esthetic value. The origins and uniqueness of feral cattle on Chirikof Island, Alaska, are uncertain. The island is now part of the Alaska Maritime Wildlife Refuge and Federal wildlife managers want grazing to cease, presumably leading to demise of the cattle. Here we characterize the cattle of Chirikof Island relative to extant breeds and discern their origins. Our analyses support the inference that Yakut...

Data from: Combined effects of local habitat, anthropogenic stress, and dispersal on stream ecosystems: a mesocosm experiment

Jarno Turunen, Pauliina Louhi, Heikki Mykrä, Jukka Aroviita, Emmi Putkonen, Ari Huusko & Timo Muotka
The effects of anthropogenic stressors on community structure and ecosystem functioning can be strongly influenced by local habitat structure and dispersal from source communities. Catchment land uses increase the input of fine sediments into stream channels, clogging the interstitial spaces of benthic habitats. Aquatic macrophytes enhance habitat heterogeneity and mediate important ecosystem functions, being thus a key component of habitat structure in many streams. Therefore, the recovery of macrophytes following in-stream habitat modification may be...

Data from: Home ground advantage: local Atlantic salmon have higher reproductive fitness than dispersers in the wild

Kenyon B. Mobley, Hanna Granroth-Wilding, Mikko Ellmen, Juha-Pekka Vähä, Tutku Aykanat, Susan E. Johnston, Panu Orell, Jaakko Erkinaro & Craig R. Primmer
A long-held, but poorly tested, assumption in natural populations is that individuals that disperse into new areas for reproduction are at a disadvantage compared to individuals that reproduce in their natal habitat, underpinning the eco-evolutionary processes of local adaptation and ecological speciation. Here, we capitalize on fine-scale population structure and natural dispersal events to compare the reproductive success of local and dispersing individuals captured on the same spawning ground in four consecutive parent-offspring cohorts of...

Data from: Surface and subsurface phosphorus discharge from a clay soil in a 9-year study comparing no-till and plowing

Risto Uusitalo, Riitta Lemola & Eila Turtola
No-till as a water protection measure is highly efficient in controlling erosion and particulate phosphorus (PP) loss, but tends to increase dissolved reactive P (DRP) concentrations in runoff water. In a 9-year field study on a clay soil in SW Finland, the effects of no-till and autumn plowing on surface runoff and subsurface drainage water quality were compared. The site had 2% slope and was under spring cereal cropping, with approximately replacement fertilizer P rates....

Data from: Sediments and flow have mainly independent effects on multitrophic stream communities and ecosystem functions

Kaisa-Riikka Mustonen, Heikki Mykrä, Pauliina Louhi, Annamari Markkola, Mikko Tolkkinen, Ari Huusko, Nico Alioravainen, Sirkku Mäkinen, Timo Muotka & Sirkku Lehtinen
Stream ecosystems are affected by multiple abiotic stressors, and species responses to simultaneous stressors may differ from those predicted based on single-stressor responses. Using 12 semi-natural stream channels, we examined the individual and interactive effects of flow level (low or high flow) and addition of fine sediments (grain size < 2mm) on key ecosystem processes (leaf breakdown, algal biomass accrual) and benthic macroinvertebrate and fungal communities. Both stressors had mostly independent effects on biological responses,...

Data from: Socio-economic impact classification of alien taxa (SEICAT)

Sven Bacher, Tim M. Blackburn, Franz Essl, Piero Genovesi, Jaakko Heikkilä, Jonathan M. Jeschke, Glyn Jones, Reuben Keller, Marc Kenis, Christoph Kueffer, Angeliki F. Martinou, Wolfgang Nentwig, Jan Pergl, Petr Pyšek, Wolfgang Rabitsch, David M. Richardson, Helen E. Roy, Wolf-Christian Saul, Riccardo Scalera, Montserrat Vila, John R. U. Wilson, Sabina Kumschick & Sabrina Kumschick
Many alien taxa are known to cause socio-economic impacts by affecting the different constituents of human well-being (security; material and non-material assets; health; social, spiritual and cultural relations; freedom of choice and action). Attempts to quantify socio-economic impacts in monetary terms are unlikely to provide a useful basis for evaluating and comparing impacts of alien taxa because they are notoriously difficult to measure and important aspects of human well-being are ignored. Here, we propose a...

Data from: Oxygen and carbon isoscapes for the Baltic Sea: testing their applicability in fish migration studies

Jyrki Torniainen, Anssi Lensu, Pekka J. Vuorinen, Eloni Sonninen, Marja Keinänen, Roger I. Jones, William P. Patterson & Mikko Kiljunen
Conventional tags applied to individuals have been used to investigate animal movement, but these methods require tagged individuals be recaptured. Maps of regional isotopic variability known as “isoscapes” offer potential for various applications in migration research without tagging wherein isotope values of tissues are compared to environmental isotope values. In this study, we present the spatial variability in oxygen (math formula) and dissolved inorganic carbon (δ13CDIC) isotope values of Baltic Sea water. We also provide...

Data from: Inter-annual variation and long-term trends in proportions of resident individuals in partially migratory birds

Kalle Meller, Anssi V Vähätalo, Tatu Hokkanen, Jukka Rintala, Markus Piha & Aleksi Lehikoinen
Partial migration – a part of a population migrates and another part stays resident year-round on the breeding site – is probably the most common type of migration in the animal kingdom, yet it has only lately garnered more attention. Theoretical studies indicate that in partially migratory populations, the proportion of resident individuals (PoR) should increase in high latitudes in response to the warming climate, but empirical evidence exists for few species. We provide the...

Data from: The changing contribution of top-down and bottom-up limitation of mesopredators during 220 years of land use and climate change

Marianne Pasanen-Mortensen, Bodil Elmhagen, Harto Linden, Roger Bergström, Märtha Wallgren, Ype Van Der Velde, Sara A. O. Cousins & Sara A.O. Cousins
Apex predators may buffer bottom-up driven ecosystem change, as top-down suppression may dampen herbivore and mesopredator responses to increased resource availability. However, theory suggests that for this buffering capacity to be realized, the equilibrium abundance of apex predators must increase. This raises the question: will apex predators maintain herbivore/mesopredator limitation, if bottom-up change relaxes resource constraints? Here, we explore changes in mesopredator (red fox Vulpes vulpes) abundance over 220 years in response to eradication and...

Data from: Do environmental conditions experienced in early life affect recruitment age and performance at first breeding in common goldeneye females?

Hannu Pöysä, Robert G. Clark, Antti Paasivaara & Pentti Runko
Environmental conditions experienced early in life may have long-term impacts on life history traits and reproductive performance. We investigated whether ambient temperature experienced during the first two to four weeks of life and weather severity during the first two winters affected recruitment age and relative timing of breeding in the year of recruitment in female common goldeneyes (Bucephala clangula). Our sample consisted of 141 female recruits hatched in a study population in central Finland between...

Data from: Genetic heterogeneity underlying variation in a locally adaptive clinal trait in Pinus sylvestris revealed by a Bayesian multipopulation analysis

Sonja T. Kujala, Timo Knürr, Katri Kärkkäinen, David B. Neale, Mikko J. Sillanpää & Outi Savolainen
Local adaptation is a common feature of plant and animal populations. Adaptive phenotypic traits are genetically differentiated along environmental gradients, but the genetic basis of such adaptation is still poorly known. Genetic association studies of local adaptation combine data over populations. Correcting for population structure in these studies can be problematic since both selection and neutral demographic events can create similar allele frequency differences between populations. Correcting for demography with traditional methods may lead to...

Data from: Rearing background and exposure environment together explain higher survival of aquaculture fish during a bacterial outbreak

Ville Räihä, Lotta-Riina Sundberg, Roghaieh Ashrafi, Pekka Hyvärinen & Anssi Karvonen
1. Parasitic diseases represent one of the greatest challenges for aquaculture worldwide and there is an increasing emphasis on ecological solutions to prevent infections. One proposed solution is enriched rearing, where traditional stimulus-poor rearing tanks are equipped with different types of structures to increase habitat complexity. Such spatial enrichment is known to increase survival of fish during parasite epidemics, but the underlying mechanisms are still unclear. 2. We studied whether enriched rearing affected infection of...

Data from: Accumulation rates and sources of external nitrogen in decaying wood in a Norway spruce dominated forest

Katja T. Rinne, Tiina Rajala, Krista Peltoniemi, Janet Chen, Aino Smolander & Raisa Mäkipää
Microbial respiration in dead wood contributes substantially to the long-lived forest carbon (C) pool and has a significant role in the forest nitrogen (N) cycle. Wood N content has been found to increase during the decay process; however, temporal dynamics and the sources of this external N remain unclear. To examine N dynamics at various stages of decomposition, we combined high variety of analytical methods on Norway spruce logs, including wood δ15N, N%, 14C-dating, fungal...

Data from: What data to use for forest conservation planning? A comparison of coarse open and detailed proprietary forest inventory data in Finland

Joona A. Lehtomäki, Sakari Tuominen, Tuuli Toivonen, Antti Leinonen & Joona Lehtomäki
The boreal region is facing intensifying resource extraction pressure, but the lack of comprehensive biodiversity data makes operative forest conservation planning difficult. Many countries have implemented forest inventory schemes and are making extensive and up-to-date forest databases increasingly available. Some of the more detailed inventory databases, however, remain proprietary and unavailable for conservation planning. Here, we investigate how well different open and proprietary forest inventory data sets suit the purpose of conservation prioritization in Finland....

Data from: Integrating genetic analysis of mixed populations with a spatially-explicit population dynamics model

Rebecca Whitlock, Samu Mäntyniemi, Stefan Palm, Marja-Liisa Koljenen, Johan Dannewitz, Johan Östergren & Marja-Liisa Koljonen
Inferring the dynamics of populations in time and space is a central challenge in ecology. Intra-specific structure (for example genetically distinct sub-populations or meta-populations) may require methods that can jointly infer the dynamics of multiple populations. This is of particular importance for harvested species, for which management must balance utilization of productive populations with protection of weak ones. Here we present a novel method for simultaneous learning about the spatio-temporal dynamics of multiple populations that...

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