194 Works

RADseq data reveal a lack of admixture in a mouse lemur contact zone contrary to previous microsatellite results

Jelmer Poelstra, Karina Montero, Jan Lüdemann, Ziheng Yang, S. Jacques Rakotondranary, Paul Hohenlohe, Nadine Stetter, Jörg Ganzhorn & Anne Yoder
Microsatellites have been a workhorse of evolutionary genetic studies for decades and are still commonly in use for estimating signatures of genetic diversity at the population and species level across a multitude of taxa. Yet, the very high mutation rate of these loci is a double-edged sword, conferring great sensitivity at shallow levels of analysis (e.g., paternity analysis) but yielding considerable uncertainty for deeper evolutionary comparisons. For the present study, we used reduced representation genome-wide...

Summary statistics for Alzheimer's disease GWAS on APOE-e4 homozygous individuals in UK Biobank

M Bracher-Smith, G Leonenko, E Baker, K Crawford, A Graham, D Salih, B Howell, J Hardy & V Escott-Price
We conducted a genome-wide association study in a sample of 5,390 APOE-ε4 homozygous (ε4ε4) individuals (288 cases and 5,102 controls) aged 65 or over in the UK Biobank. Results are the summary statistics from a GWAS conducted in Plink using age, sex and the first 15 principal components as covariates. There are 5,349,830 rows and 9 columns. Each row corresponds to a variant. Columns are: CHR, BP, SNP, A1, A2_counted_allele, OR, SE_beta, Z_STAT and P....

Correlative 3D SBFSEM data from: Intermittent bulk release of human cytomegalovirus

Felix Flomm, Timothy K Soh, Carola Schneider, Linda Wedemann, Hannah M Britt, Konstantinos Thalassinos, Soeren Pfitzner, Rudolph Reimer, Kay Grünewald & Jens Bernhard Bosse
Human Cytomegalovirus (HCMV) can infect a variety of cell types by using virions of varying glycoprotein compositions. It is still unclear how this diversity is generated, but spatio-temporally separated envelopment and egress pathways might play a role. So far, one egress pathway has been described in which HCMV particles are individually enveloped into small vesicles and are subsequently exocytosed continuously. However, some studies have also found enveloped virus particles inside multivesicular structures but could not...

T-72 SAR data dome (Remote Sensing: 0.25λ)

Michael Woollard
This dataset contains a data dome of simulated compensated phase history data (CPHD) files for a T-72 main battle tank target. These outputs were produced using the SARCASTIC v2.0 simulator (Remote Sens. 2022, 14(11), 2561; https://doi.org/10.3390/rs14112561).In this archive, the following configuration was used: No ground plane Ray-tube sizing: 0.25 λ Point spread function emulation Each simulated file follows the naming convention "T72B-ddome-X-Y.sarc.cph", where X is the azimuth and Y is the elevation at the centre...

T-72 SAR data dome (Remote Sensing: 0.1λ, no PSF)

Michael Woollard
This dataset contains a data dome of simulated compensated phase history data (CPHD) files for a T-72 main battle tank target. These outputs were produced using the SARCASTIC v2.0 simulator (Remote Sens. 2022, 14(11), 2561; https://doi.org/10.3390/rs14112561). In this archive, the following configuration was used: No ground plane Ray-tube sizing: 0.1 λ No point spread function emulation Each simulated file follows the naming convention "T72B-ddome-X-Y.sarc.cph", where X is the azimuth and Y is the elevation at...

T-72 SAR data dome (Remote Sensing: 0.25λ, no PSF)

Michael Woollard
This dataset contains a data dome of simulated compensated phase history data (CPHD) files for a T-72 main battle tank target. These outputs were produced using the SARCASTIC v2.0 simulator (Remote Sens. 2022, 14(11), 2561; https://doi.org/10.3390/rs14112561).In this archive, the following configuration was used: No ground plane Ray-tube sizing: 0.25 λ No point spread function emulation Each simulated file follows the naming convention "T72B-ddome-X-Y.sarc.cph", where X is the azimuth and Y is the elevation at the...

Processed Plaque-2.0 infection scores of the PCL screen for HSV, imaged and analysed at UZH.

Dominik Olszewski, Fanny Georgi, Luca Murer, Vardan Andriasyan, Fabien Kuttler, Gerardo Turcatti, Urs Greber & Artur Yakimovich
virus indicates virus genotype, the PCL was tested against, compoundIdentifier indicates the UZH identifier for blinded testing by UZH, PCL_ID and compoundName disclose the PCL compound identifier and name, respectively. Barcode1, Barcode2, and Barcode3 indicate on which screening plates, given by the screening plate sequence number defined by EPFL, the PCL compound was tested on. The PrestoBlue toxicity scoring of the compound tested in noninfected cells is given as 1 (toxic) and 0 (non-toxic) in...

Research data for paper Molecular and functional characterization of an evolutionarily conserved CREB-binding protein in the Lymnaea CNS

Dai Hatakeyama, Hiroshi Sunada, Yuki Totani, Takayuki Watanabe, Ildikó Felletár, Adam Fitchett, Murat Eravci, Aikaterini Anagnostopoulou, Ryosuke Miki, Ayano Okada, Naoya Abe, Takashi Kuzuhara, Ildiko Kemenes, Etsuro Ito & George Kemenes
Research data for paper Molecular and functional characterization of an evolutionarily conserved CREB-binding protein in the Lymnaea CNS (FASEB Journal October 2022).
This dataset consists of two Excel spreadsheets containing molecular biological and electrophysiological data, respectively.
The data used for Figure 2 was obtained by measuring the expression levels of the CBP mRNA in different tissues of Lymnaea by using qRT-PCR. The data used for the graph and associated statistical analysis show that...

Additional file 2 of Early brass from the Foyemiaowan-Xindiantai cemetery, 265–439 ce: the origin and diffusion of brass in ancient China

Qiangbing Wei, Yanxiang Li, Thilo Rehren, Honglian Ma, Xiuhui Li & Jianli Chen
Additional file 2: Table S2.

Raw interpolation surfaces

Barney Harris
All interpolated surfaces and error data compressed as .zip archives. Must be first uncompressed and then opened in R using readRDS()
These surfaces were interpolated as part of the research paper, "Linear modelling: optimising interpolation for a LiDAR-based volumetric investigation into the construction of Iron Age and early medieval linear earthworks in England"



2019SG03-0000 Project Metadata

Sam Lunn-Rockliffe & Joseph Kimutai Cheptorus
Metadata spreadsheet with all the metadata information for the assets uploaded in project 2019SG03 following the Material Culture Ethnography Metadata Schema (MCEMS), which was developed for the Endangered Material Knowledge Programme (EMKP). MCEMS is intended to record the metadata for digital objects that were created as part of ethnographic research recording material culture, living heritage, cultural practices, and different forms of knowledge. Its aim is to aid the preservation of ethnography-specific information, facilitate archiving for...

Additional file 1 of Neoplastic cell enrichment of tumor tissues using coring and laser microdissection for proteomic and genomic analyses of pancreatic ductal adenocarcinoma

Qing Kay Li, Yingwei Hu, Lijun Chen, Michael Schnaubelt, Daniel Cui Zhou, Yize Li, Rita Jui-Hsien Lu, Mathangi Thiagarajan, Galen Hostetter, Chelsea J. Newton, Scott D. Jewell, Gil Omenn, Ana I. Robles, Mehdi Mesri, Oliver F. Bathe, Bing Zhang, Li Ding, Ralph H. Hruban, Daniel W. Chan & Hui Zhang
Additional file 1: Table S1. Clinical information of study cases. Table S2. Expression of proteins from the PDAC tumors and NATs

Additional file 1 of A genetic model for central chondrosarcoma evolution correlates with patient outcome

William Cross, Iben Lyskjær, Tom Lesluyes, Steven Hargreaves, Anna-Christina Strobl, Christopher Davies, Sara Waise, Shadi Hames-Fathi, Dahmane Oukrif, Hongtao Ye, Fernanda Amary, Roberto Tirabosco, Craig Gerrand, Toby Baker, David Barnes, Christopher Steele, Ludmil Alexandrov, Gareth Bond, Paul Cool, Nischalan Pillay, Peter Van Loo & Adrienne M. Flanagan
Additional file 1: Supplementary Tables 1-6.

An oral pH-responsive Streptococcus agalactiae vaccine formulation provides protective immunity to pathogen challenge in tilapia

Sudax Murdan, Nguyen Ngoc Phuoc, Abdul Basit, Ruth N. Zadoks, Tharangani Herath & Shazia Bashir
Data related to the Table and figures in the publication (in title) Table 1 shows Particle size measured by dynamic light scattering (mean±SD), n= 12
Figure 5 shows the Change in particle size (measured by dynamic light scattering) upon exposure to 0.1M HCl, which is simulating the acidic environment in a fasted tilapia stomach. Means are shown. Error bars reflect the SD. N=12
Fig 6 shows the pH...

Dataset for Bimbard et al., 2022

Célian Bimbard, Pak Hang Sit, Anna Lebedeva, Charu Bai Reddy, Kenneth Harris & Matteo Carandini
Dataset from large-scale recordings using Neuropixels probes in mouse visual cortex during a passive audiovisual protocol.
Companion code at https://github.com/cbimbo/Bimbard2022.
The main dataset (ONEformat.tar.gz) contains the spiking data (after spike sorting), the behavioural data (after running facemap) and the experiment metadata (stimuli ID and times). The data is organized by experiment name (mouse and date). Each experiment folder contains the data in ONE format, and a pre-processed file that can also be obtained...

Dataset for Bimbard et al., 2022

Célian Bimbard, Pak Hang Sit, Anna Lebedeva, Charu Bai Reddy, Kenneth Harris & Matteo Carandini
Dataset from large-scale recordings using Neuropixels probes in mouse visual cortex during a passive audiovisual protocol.
Companion code at https://github.com/cbimbo/Bimbard2022.
The main dataset (ONEformat.tar.gz) contains the spiking data (after spike sorting), the behavioural data (after running facemap) and the experiment metadata (stimuli ID and times). The data is organized by experiment name (mouse and date). Each experiment folder contains the data in ONE format, and a pre-processed file that can also be obtained...

Scripts and data for paper \"The patterned assembly and stepwise Vps4-mediated disassembly of composite ESCRT-III polymers drives archaeal cell division\"

Xiuyun Jiang, Lena Kirschneck, Andela Saric & Christian Vanhille Campos
final data points, matplotlib scripts, and lammps input scripts used to generate the computational work including Fig.5, Fig.S5, Fig.S7 in this work. Final data points and plot scripts are in subfolders "data", lammps input scripts for the molecular dynamics simulations are in the subfolders "lammps_input".

Scripts and data for paper \"The patterned assembly and stepwise Vps4-mediated disassembly of composite ESCRT-III polymers drives archaeal cell division\"

Xiuyun Jiang, Lena Kirschneck, Andela Saric & Christian Vanhille Campos
final data points, matplotlib scripts, and lammps input scripts used to generate the computational work including Fig.5, Fig.S5, Fig.S7 in this work. Final data points and plot scripts are in subfolders "data", lammps input scripts for the molecular dynamics simulations are in the subfolders "lammps_input".

Additional file 1 of Risk factors for natural menopause before the age of 45: evidence from two British population-based birth cohort studies

Darina Peycheva, Alice Sullivan, Rebecca Hardy, Alex Bryson, Gabriella Conti & George Ploubidis
Additional file 1: Supplemetary material. Risk factors for natural menopause before the age of 45: evidence from two British population-based birth cohort stuides. Harmonised variables used in the analysis (Table 1 Menopause status); classification of women into menopause status (Table 2.1, 2.2 Menopause status); descriptive statistics for all variables included in the analysis for each cohort separately (Table 3 Descriptive statistics); univariate and multivariate study specific (Tables 5,6 Study specific) and pooled (Table 4 Pooled...

A transcriptomic axis predicts state modulation of cortical interneurons

Stephane Bugeon, Matteo Carandini & Kenneth Harris
This data release contains the in vivo neural recordings (using two-photon calcium imaging) and post-hoc transcriptomic information for >1000 inhibitory cells in mouse primary visual cortex. This data consists in 4 animals and 17 recording sessions, during spontaneous activity and presentation of visual stimuli (drifting gratings, natural images).
DatasetTypes.xlsx provides useful information about the dataset.
If you use these data in a paper, please cite the original research paper, as well as this dataset using...

Additional material for the paper \"Investigating the Effectiveness of Clustering for Story Point Estimation\"

Vali Tawosi, Afnan Abdulaziz A Alsubaihin & Federica Sarro
This repository contains the data and code used in the paper titled "Investigating the Effectiveness of Clustering for Story Point Estimation" by Vali Tawosi, Afnan Al-Subaihin, and Federica Sarro, accepted at the IEEE International Conference on Software Analysis, Evolution and Reengineering (SANER), 2022.

Arrival catalog of coronal mass ejections observed with STEREO Heliospheric Imagers (HELCATS ARRCAT 2.0)

Christian Moestl, David Barnes, Jackie Davies, Richard Harrison, David Stansby & Andreas Weiss
ARRIVAL CATALOGUE 2.0
In this ARRival CATalog (ARRCAT), the arrivals of solar coronal mass ejections that were tracked in the STEREO heliospheric imagers in the HELCATS project are calculated.
ARRCAT lists modeled arrivals of CMEs at various spacecraft and planets, between April 2007 - April 2022, based on the HIGeoCAT catalog of CMEs established at RAL Space, UK (R. A. Harrison, J. A. Davies, D. Barnes).
This is version 2.0, released 2020-May-13,...

Deep Imaging Egyptian Mummy Cases

Adam Gibson & Melissa Terras
Under the direction of University College London (UCL), this international, multidisciplinary project assessed the feasibility of using non-destructive digital imaging technology to make texts visible in images of papyrus in Ancient Egyptian mummy case cartonnages for open research and analysis. Our pilot project has led to an understanding of which imaging modalities are worth pursuing in future research projects. The massive finding of papyri in Egypt between the end of the 19th and the beginning...

Data underpinning \"Scaling Spatial Multiplexing with Principal Modes\"

Fabio Aparecido Barbosa & Filipe Marques Ferreira
Data points for the research paper "Scaling Spatial Multiplexing with Principal Modes", accept at the 2022 IEEE Photonics Conference:
1) File Fig2a.csv - Average SNR of the received constellations versus standard deviation of mode-dependent loss;
2) File Fig2b.csv - Channel impulse response compression versus standard deviation of mode-dependent loss;
File format: '.csv (comma-separated values)'. Use a standard text editor or spreadsheet program to visualize the data.

Raw Data for \"On-demand cell-autonomous gene therapy for brain circuit disorders\", Qiu et al. 2022 Science

Gabriele Lignani, Nathanael O'Neill, Yichen Qiu, Benito Maffei & Clara Zourray
Raw Data for Qui et al. 2022 10.1126/science.abq6656
On-demand cell-autonomous gene therapy for brain circuit disorders Yichen Qiu, Nathanael O’Neill, Benito Maffei, Clara Zourray, Amanda Almacellas Barbanoj, Jenna C. Carpenter,Steffan P. Jones, Marco Leite, Thomas J. Turner, Francisco C. Moreira, Albert Snowball, Tawfeeq Shekh-Ahmad, Vincent Magloire, Serena Barral, Manju A. Kurian, Matthew C. Walker, Stephanie Schorge, Dimitri M. Kullmann, Gabriele Lignani
Content: EEG MEA Immuno Patch Clamp Electrophysiology
All data are in...

Registration Year

  • 2022
    194

Resource Types

  • Dataset
    194

Affiliations

  • University College London
    194
  • Shanghai Jiao Tong University
    13
  • Peking University
    13
  • Institut Català d'Oncologia
    11
  • Guizhou University
    10
  • North West Agriculture and Forestry University
    9
  • Zhejiang University
    9
  • Guangzhou Medical University
    9
  • University of Barcelona
    9
  • Qingdao University
    9