30 Works

Additional file 2 of Comparative study of excretory–secretory proteins released by Schistosoma mansoni-resistant, susceptible and naïve Biomphalaria glabrata

Conor E. Fogarty, Min Zhao, Donald P. McManus, Mary G. Duke, Scott F. Cummins & Tianfang Wang
Additional file 2: Table S1. Statistical analysis of behavioural bioassays. Two-way ANONA method was used to evaluate the significance of the behavioural modifications.

Pyrite oxidation under carbonate buffer and its environmental implications: a case study from the Shangmanggang gold deposit, southwest China

Yanyan Wang, Xuemin Liu & Qi Li
Supplement 2: the size of pyrite and goethite from the SMG.

Drivers of Odonata flight timing revealed by natural history collection data

Taylor Woods & Daniel McGarvey
Global change may cause widespread phenological shifts. But knowledge of the extent and generality of these shifts is limited by the availability of phenological records with sufficiently large spatiotemporal extents. Using North American odonates (damselflies and dragonflies) as a model system, we show how a combination of natural history museum and community science collections, beginning in 1901 and extending through 2020, can be leveraged to better understand phenology. We begin with an analysis of odonate...

Use of routine health records to study mental health care of Brazilian children

Jacyra Azevedo Paiva de Araújo, Elisângela da Silva Rodrigues, Luis Fernando Silva Castro-de-Araujo, Daiane Borges Machado & Maurício L. Barreto
ABSTRACT Objective To investigate the clinical epidemiological characteristics of a large data set of visits to outpatient children mental health services in Brazil, as well as to identify relevant relationships between age, sex and three common mental disorders in childhood: pervasive developmental disorders, ADHD, and mild depressive disorders. Methods We extracted data from the Ambulatorial Information System (SIA) part of a public repository, Datasus, regarding child outpatient mental health services in Brazil, from 2008 to...

Above and belowground plant traits of dominant dune grasses from Duck, Outer Banks, USA

Julie Zinnert & Shannon Walker
We examined above and belowground traits among four prominent dune grasses of the Atlantic and Gulf Coasts of North America: Ammophila breviligulata, Panicum amarum, Spartina patens, and Uniola paniculata. Whole plant samples of each species were collected from the foredune at the US Army Engineer Research and Development Center’s Field Research Facility in Duck, North Carolina, USA and quantified for several above and belowground traits (e.g., stem height, rhizome number and length, root surface area...

Additional file 8 of Comparative study of excretory–secretory proteins released by Schistosoma mansoni-resistant, susceptible and naïve Biomphalaria glabrata

Conor E. Fogarty, Min Zhao, Donald P. McManus, Mary G. Duke, Scott F. Cummins & Tianfang Wang
Additional file 8: Table S5. A list of the total proteins, unique proteins and corresponding peptides identified in susceptible B. glabrata SCW with reference to the S. mansoni proteome, and enriched GO terms related to the proteins.

Additional file 2 of Cost-effectively dissecting the genetic architecture of complex wool traits in rabbits by low-coverage sequencing

Dan Wang, Kerui Xie, Yanyan Wang, Jiaqing Hu, Wenqiang Li, Aiguo Yang, Qin Zhang, Chao Ning & Xinzhong Fan
Additional file 2: Table S1. Genotype accuracy and concordance of imputation obtained with the three pipelines on 15 individuals. Table S2. Genotype accuracy and concordance of imputation by the three pipelines with the MAF ranges. Table S3. Genotype accuracy and concordance of imputation with different sample size and depth by BaseVar + STITCH. Table S4. Variant analysis by regions and functions. Table S5. LD decay in the Angora rabbit population. Table S6. Genes located in...

A global analysis of viviparity in squamates highlights its prevalence in cold climates

Anna Zimin, Sean Zimin, Richard Shine, Luciano Avila, Aaron Bauer, Monika Böhm, Rafe Brown, Goni Barki, Gabriel Henrique De Oliveira Caetano, Fernando-Castro Herrera, David Chapple, Laurent Chirio, Guarino Colli, Tiffany Doan, Frank Glaw, L. Lee Grismer, Yuval Itescu, Fred Kraus, Matthew LeBreton, Marcio Martins, Mariana Morado, Gopal Murali, Zoltán Nagy, Maria Novosolov, Paul Oliver … & Shai Meiri
Aim: Viviparity has evolved more times in squamates than in any other vertebrate group. Therefore, squamates offer an excellent model system to study the patterns, drivers, and implications of reproductive mode evolution. Based on current species distributions we examined three selective forces hypothesized to drive squamate viviparity evolution: (1) cold climate, (2) variable climate, and (3) hypoxic conditions, and tested whether viviparity is associated with larger body size. Location: Global. Time period: present day. Taxon:...

Data from: Specific leaf area is lower on ultramafic than on neighbouring non-ultramafic soils

Catherine Hulshof, , Claudia Garnica-Díaz, Dena Grosseenbacher, George Adamidis, Panayiotis Dimitrakopoulos, Stefan Siebert, Marko Spasojevic & Nishanta Rajakaruna
These are datasets in csv format for ultramafic and non-ultramafic sampling sites where specific leaf area (SLA) was collected in five climatically diverse regions: Puerto Rico (tropical wet), Costa Rica (tropical dry), South Africa (subtropical), California and Lesbos (both with Mediterranean climate). The datasets include plant species level mean SLA values, regional coordinates, regional climate data, bioclimatic variables for individual sites, and a joined dataset that includes site level coordinates and climate variables. The R...

Additional file 5 of Comparative study of excretory–secretory proteins released by Schistosoma mansoni-resistant, susceptible and naïve Biomphalaria glabrata

Conor E. Fogarty, Min Zhao, Donald P. McManus, Mary G. Duke, Scott F. Cummins & Tianfang Wang
Additional file 5: Table S4. A list of the total proteins, unique proteins and corresponding peptides identified in susceptible B. glabrata with reference to the B. glabrata proteome.

Additional file 9 of Comparative study of excretory–secretory proteins released by Schistosoma mansoni-resistant, susceptible and naïve Biomphalaria glabrata

Conor E. Fogarty, Min Zhao, Donald P. McManus, Mary G. Duke, Scott F. Cummins & Tianfang Wang
Additional file 9: Table S6. The results of PPIs shown in Fig. 5 and the co-expression data export from STRING to support the PPI of S. mansoni proteins.

Additional file 1 of Comparative study of excretory–secretory proteins released by Schistosoma mansoni-resistant, susceptible and naïve Biomphalaria glabrata

Conor E. Fogarty, Min Zhao, Donald P. McManus, Mary G. Duke, Scott F. Cummins & Tianfang Wang
Additional file 1: Database S1. The B. glabrata protein database used in the proteomic data analysis.

Methyl-Sensitive Amplification Polymorphism (MSAP) Analysis Provides Insights into the DNA Methylation Underlying Heterosis in Kenaf (Hibiscus Cannabinus L.) Drought Tolerance

Dengjie Luo, Shan Cao, Zengqiang Li, Meiqiong Tang, Caijin Wang, Enerand Mackon, Zhen Huang, Jiao Pan, Xia Wu, Qijing Wu, Hui Zhang, Renxue Li, Xin Li, Ru Li & Peng Chen
Kenaf (Hibiscus cannabinus L.) is an industrial fiber crop with significant heterosis and tolerance to abiotic stresses. However, the mechanism underlying heterosis in kenaf under drought conditions is completely unknown. In this study, F1 hybrids were remarkably tolerant to drought stress. Through methylation-sensitive amplification polymorphism (MSAP) analysis, we highlighted that total DNA methylation level under drought decreased by 11.2% in F1 and increased by 29.7% and 13.1% in parents CP079 and CP071, respectively. Unlike parents,...

Assignment feedback in school choice mechanisms

Daniel Stephenson
This paper experimentally investigates the provision of real-time feedback about school assignments during the preference reporting period in three widely employed mechanisms: deferred acceptance, top trading cycles, and the Boston mechanism. Adaptive models predict that greater sensitivity to tentative assignments during the reporting period will produce more equilibrium assignments in all three mechanisms. Consistent with adaptive predictions, real-time assignment feedback consistently increased equilibrium assignments but did not increase truthful reporting. These findings suggest that providing...

Cerulean Warbler light-level geolocator data

Douglas Raybuck, Than Boves, Scott Stoleson, Jeffery Larkin, Nicholas Bayly, Lesley Bulluck, Gregory George, Kate Slankard, Laura Kearns, Sharon Petzinger, John Cox & David Buehler
The Cerulean Warbler (Setophaga cerulea) is a declining Nearctic-Neotropical migratory species of conservation concern. Implementing full annual cycle conservation strategies to facilitate recovery has been difficult because we know little about the migratory period or connectivity between North American breeding regions and South American non-breeding regions. Between 2014–2017, we deployed geolocators on 282 males at 13 study sites throughout the species’ range with the objectives of a) evaluating the strength of connectivity between breeding and...

Pyrite oxidation under carbonate buffer and its environmental implications: a case study from the Shangmanggang gold deposit, southwest China

Yanyan Wang, Xuemin Liu & Qi Li
Supplement 1: the EMPA data of goethite and pyrite from the SMG.

Pyrite oxidation under carbonate buffer and its environmental implications: a case study from the Shangmanggang gold deposit, southwest China

Yanyan Wang, Xuemin Liu & Qi Li
Supplement 2

Pyrite oxidation under carbonate buffer and its environmental implications: a case study from the Shangmanggang gold deposit, southwest China

Yanyan Wang, Xuemin Liu & Qi Li
Supplement 2

Additional file 2 of Cost-effectively dissecting the genetic architecture of complex wool traits in rabbits by low-coverage sequencing

Dan Wang, Kerui Xie, Yanyan Wang, Jiaqing Hu, Wenqiang Li, Aiguo Yang, Qin Zhang, Chao Ning & Xinzhong Fan
Additional file 2: Table S1. Genotype accuracy and concordance of imputation obtained with the three pipelines on 15 individuals. Table S2. Genotype accuracy and concordance of imputation by the three pipelines with the MAF ranges. Table S3. Genotype accuracy and concordance of imputation with different sample size and depth by BaseVar + STITCH. Table S4. Variant analysis by regions and functions. Table S5. LD decay in the Angora rabbit population. Table S6. Genes located in...

Additional file 1 of Expanding known viral diversity in plants: virome of 161 species alongside an ancient canal

Shixing Yang, Qingqing Mao, Yan Wang, Jingxian He, Jie Yang, Xu Chen, Yuqing Xiao, Yumin He, Min Zhao, Juan Lu, Zijun Yang, Ziyuan Dai, Qi Liu, Yuxin Yao, Xiang Lu, Hong Li, Rui Zhou, Jian Zeng, Wang Li, Chenglin Zhou, Xiaochun Wang, Quan Shen, Hui Xu, Xutao Deng, Eric Delwart … & Wen Zhang
Additional file 1. Table S1: Plant species and library information.

Use of routine health records to study mental health care of Brazilian children

Jacyra Azevedo Paiva de Araújo, Elisângela da Silva Rodrigues, Luis Fernando Silva Castro-de-Araujo, Daiane Borges Machado & Maurício L. Barreto
ABSTRACT Objective To investigate the clinical epidemiological characteristics of a large data set of visits to outpatient children mental health services in Brazil, as well as to identify relevant relationships between age, sex and three common mental disorders in childhood: pervasive developmental disorders, ADHD, and mild depressive disorders. Methods We extracted data from the Ambulatorial Information System (SIA) part of a public repository, Datasus, regarding child outpatient mental health services in Brazil, from 2008 to...

Data from: Global plant ecology of tropical ultramafic ecosystems

Catherine Hulshof, Claudia Garnica-Díaz, Rosalina Berazaín Iturralde, Betsaida Cabrera, Erick Calderón-Morales, Fermín L. Felipe, Ricardo García, José Luis Gómez Hechavarría, Aretha Franklin Guimarães, Ernesto Medina, Adrian L.D. Paul, Nishanta Rajakaruna, Carla Restrepo, Stefan Siebert, Eduardo Van Den Berg, Antony Van Der Ent & Grisel Velasquez
This is a compiled geospatial dataset in ESRI polygon shapefile format of ultramafic soils of the neotropics showing the location of ultramafic soils in Guatemala, Cuba, Dominican Republic, Puerto Rico, Costa Rica, Colombia, Argentina, Chile, Venezuela, Ecuador, Brazil, Suriname, French Guiana, and Bolivia. The data are derived from seven geospatial datasets. Original datasets were subset to include only ultramafic areas, datasets were assigned a common projection (WGS84), attribute tables were reconciled to a common set...

Methyl-Sensitive Amplification Polymorphism (MSAP) Analysis Provides Insights into the DNA Methylation Underlying Heterosis in Kenaf (Hibiscus Cannabinus L.) Drought Tolerance

Dengjie Luo, Shan Cao, Zengqiang Li, Meiqiong Tang, Caijin Wang, Enerand Mackon, Zhen Huang, Jiao Pan, Xia Wu, Qijing Wu, Hui Zhang, Renxue Li, Xin Li, Ru Li & Peng Chen
Kenaf (Hibiscus cannabinus L.) is an industrial fiber crop with significant heterosis and tolerance to abiotic stresses. However, the mechanism underlying heterosis in kenaf under drought conditions is completely unknown. In this study, F1 hybrids were remarkably tolerant to drought stress. Through methylation-sensitive amplification polymorphism (MSAP) analysis, we highlighted that total DNA methylation level under drought decreased by 11.2% in F1 and increased by 29.7% and 13.1% in parents CP079 and CP071, respectively. Unlike parents,...

Additional file 3 of Comparative study of excretory–secretory proteins released by Schistosoma mansoni-resistant, susceptible and naïve Biomphalaria glabrata

Conor E. Fogarty, Min Zhao, Donald P. McManus, Mary G. Duke, Scott F. Cummins & Tianfang Wang
Additional file 3: Table S2. A list of the total proteins, unique proteins and corresponding peptides identified in naïve B. glabrata with reference to the B. glabrata proteome.

Additional file 4 of Comparative study of excretory–secretory proteins released by Schistosoma mansoni-resistant, susceptible and naïve Biomphalaria glabrata

Conor E. Fogarty, Min Zhao, Donald P. McManus, Mary G. Duke, Scott F. Cummins & Tianfang Wang
Additional file 4: Table S3. A list of the total proteins, unique proteins and corresponding peptides identified resistant B. glabrata with reference to the B. glabrata proteome.

Registration Year

  • 2022
    30

Resource Types

  • Dataset
    30

Affiliations

  • Virginia Commonwealth University
    30
  • Shanghai Jiao Tong University
    21
  • Zhejiang University
    14
  • Sichuan University
    12
  • Southern Medical University
    12
  • Chinese Academy of Medical Sciences & Peking Union Medical College
    12
  • Army Medical University
    12
  • Shanghai University of Traditional Chinese Medicine
    11
  • Nankai University
    11
  • Shandong University
    11