18 Works

Taxonomic Word Embeddings - Trained on English WordNet Random Walk Pseudo-Corpora

Filip Klubicka, Alfredo Maldonado, Abhijit Mahalunkar & John D. Kelleher

A general swimming response in exhausted obligate swimming fish

Gil Iosilevskii, Jacinta Kong, Carl Meyer, Yuuki Watanabe, Yannis Papastamatiou, Mark Royer, Itsumi Nakamura, Katsufumi Sato, Thomas Doyle, Luke Harman, Jonathan Houghton, Adam Barnett, Jayson Semmens, Niall Ó Maoléidigh, Alan Drumm, Ross O'Neill, Daniel Coffey & Nicholas Payne
Marine organisms normally swim at elevated speeds relative to cruising speeds only during strenuous activity, such as predation or escape. We measured swimming speeds of 29 ram ventilating sharks from 10 species and of three Atlantic bluefin tunas immediately after exhaustive exercise (fighting a capture by hook-and-line), and unexpectedly found all individuals exhibited a uniform mechanical response, with swimming speed initially 2 times higher than the cruising speeds reached approximately 6 hours later. We hypothesised...

Additional file 2 of A blood DNA methylation biomarker for predicting short-term risk of cardiovascular events

Andrea Cappozzo, Cathal McCrory, Oliver Robinson, Anna Freni Sterrantino, Carlotta Sacerdote, Vittorio Krogh, Salvatore Panico, Rosario Tumino, Licia Iacoviello, Fulvio Ricceri, Sabina Sieri, Paolo Chiodini, Gareth J. McKay, Amy Jayne McKnight, Frank Kee, Ian S. Young, Bernadette McGuinness, Eileen M. Crimmins, Thalida Em Arpawong, Rose Anne Kenny, Aisling O’Halloran, Silvia Polidoro, Giuliana Solinas, Paolo Vineis, Francesca Ieva … & Giovanni Fiorito
Additional file 2. Supplementary Tables S1, S2, and S3.

Contextual Word Embeddings - Trained on English Wikipedia Corpora

Filip Klubicka, Alfredo Maldonado, Abhijit Mahalunkar & John D. Kelleher

English Wikipedia Corpus Chunks

Filip Klubicka, Alfredo Maldonado, Abhijit Mahalunkar & John D. Kelleher

Additional file 1 of Use of rubber dam versus cotton roll isolation on composite resin restorations’ survival in primary molars: 2-year results from a non-inferiority clinical trial

Isabel C. Olegário, Bruna L. P. Moro, Tamara K. Tedesco, Raiza D. Freitas, Ana Laura Pássaro, Jonathan Rafael Garbim, Rodolfo Oliveira, Fausto M. Mendes & Daniela Prócida Raggio
Additional file 1. Survival analysis isolation methods - raw data.

Additional file 1 of Use of rubber dam versus cotton roll isolation on composite resin restorations’ survival in primary molars: 2-year results from a non-inferiority clinical trial

Isabel C. Olegário, Bruna L. P. Moro, Tamara K. Tedesco, Raiza D. Freitas, Ana Laura Pássaro, Jonathan Rafael Garbim, Rodolfo Oliveira, Fausto M. Mendes & Daniela Prócida Raggio
Additional file 1. Survival analysis isolation methods - raw data.

First large-scale quantification study of DNA preservation in insects from natural history collections using genome-wide sequencing

Victoria Elizabeth Mullin, William Stephen, Andres Arce, Will Nash, Calum Raine, David Notton, Ashleigh Whiffin, Vladimir Blagoderov, Karim Gharbi, James Hogan, Tony Hunter, Naomi Irish, Simon Jackson, Steve Judd, Chris Watkins, Wilfried Haerty, Jeff Ollerton, Selina Brace, Richard Gill & Ian Barnes
Insect declines are a global issue with significant ecological and economic ramifications. Yet we have a poor understanding of the genomic impact these losses can have. Genome-wide data from historical specimens has the potential to provide baselines of population genetic measures to study population change, with natural history collections representing large repositories of such specimens. However, an initial challenge in conducting historical DNA data analyses, is to understand how molecular preservation varies between specimens. Here,...

Latitudinal influences on bryozoan calcification through the Paleozoic

Catherine Reid, Patrick N Wyse Jackson &
Bryozoans are active non-phototrophic biomineralizers that precipitate their calcareous skeletons in sea-water. Carbonate saturation states vary temporally and spatially in Paleozoic oceans, and we used the Bryozoan Skeletal Index (BSI) to investigate whether bryozoan calcification is controlled by seawater chemistry in Paleozoic trepostome and cryptostome bryozoans. Our results show that cryptostome bryozoan genera are influenced by ocean chemistry throughout the Paleozoic and precipitate the most calcite per autozooid at lower latitudes, where carbonate saturation states...

Barry, Frank: Database on Irish Industrial History

Frank Barry
The book 'Industry and Policy in Independent Ireland, 1922-1972' identifies the leading manufacturing firms, indigenous and foreign, that were engaged in production in the Irish Free State/Ireland at any stage over the 50-year period from independence to EEC accession. This spreadsheet provides information on the sources from which the firm-level employment numbers cited in the text are drawn.

Data from: Metamorphism as the cause of bone alteration in the Jarrow assemblage (Langsettian, Pennsylvanian) of Ireland

Aodhán Ó Gogáin, Gary O'Sullivan, Thomas Clements, Brendan Hoare, John Murray & Patrick Wyse Jackson
The Jarrow assemblage is a Lagerstätte of Pennsylvanian tetrapods and fish preserved in the Leinster Coalfield, Ireland. Fossils from this site have an interesting taphonomy that is not observed in other Pennsylvanian coal swamp assemblages. The bone material of the Jarrow tetrapods has undergone alteration and eventual coalification – causing specimens to become poorly defined from the surrounding coal matrix. Bone alteration at Jarrow has traditionally been linked to early diagenesis. Here a multi-analytical approach,...

Additional file 3 of The effectiveness and acceptability of evidence synthesis summary formats for clinical guideline development groups: a mixed-methods systematic review

Melissa K. Sharp, Dayang Anis Binti Awang Baki, Joan Quigley, Barrie Tyner, Declan Devane, Kamal R. Mahtani, Susan M. Smith, Michelle O’Neill, Máirín Ryan & Barbara Clyne
Additional file 3. Data extraction workbook.

Leaf flammbility and volatiles of Ginkgo, Agathis, and Dicksonia

Rebecca Dewhirst, Sarah Baker, Jennifer McElwain, Matthew Haworth & Claire Belcher
The Triassic-Jurassic Boundary marks the third largest mass extinction event in the Phanerozoic, characterised by a rise in CO2-concentrations from ~600 ppm to ~2100 – 2400ppm, coupled with a ~3.0 – 4.0°C temperature rise. This is hypothesized to have induced major floral turnover, altering vegetation structure, composition and leaf morphology, which in turn are hypothesized to have driven changes in wildfire. However, the effects of elevated CO2 on fuel properties, such as chemical composition of...

Additional file 3 of The effectiveness and acceptability of evidence synthesis summary formats for clinical guideline development groups: a mixed-methods systematic review

Melissa K. Sharp, Dayang Anis Binti Awang Baki, Joan Quigley, Barrie Tyner, Declan Devane, Kamal R. Mahtani, Susan M. Smith, Michelle O’Neill, Máirín Ryan & Barbara Clyne
Additional file 3. Data extraction workbook.

Data from: Bumblebees can be exposed to the herbicide glyphosate whilst foraging

Linzi Jay Thompson, Stephen Smith, Jane Stout, Blánaid White, Elena Zioga & Dara Stanley
Bee declines are attributed to multiple factors, one of which is the use of pesticides. However, there is very little research surround the effects of non-insecticidal pesticides on bees. Herbicides are one of the most applied pesticide groups globally, with glyphosate being one of the most applied pesticides in the world. When herbicides are applied to plants, the plant typically dies a few days later. In the period between herbicide application and plant death it...

The biogeography of community assembly: latitude and predation drive variation in community trait distribution in a guild of epifaunal crustaceans

Collin Gross, Collin Gross, J Duffy, Kevin Hovel, Melissa Kardish, Pamela Reynolds, Christoffer Boström, Katharyn Boyer, Mathiew Cusson, Johan Eklöf, Aschwin Engelen, Klemens Eriksson, Joel Fodrie, John Griffin, Clara Hereu, Masakazu Hori, A Randall Hughes, Mikhail Ivanov, Pablo Jorgensen, Claudia Kruschel, Kun-Seop Lee, Jonathan Lefcheck, Karen McGlathery, Per-Olav Moksnes, Masahiro Nakaoka … & Jay Stachowicz
While considerable evidence exists of biogeographic patterns in the intensity of species interactions, the influence of these patterns on variation in community structure is less clear. Using a model selection approach on measures of trait dispersion in crustaceans associated with eelgrass (Zostera marina) spanning 30º of latitude in two oceans, we found that dispersion strongly increased with increasing predation and decreasing latitude. Ocean and epiphyte load appeared as secondary predictors; Pacific communities were more overdispersed...

Additional file 2 of A blood DNA methylation biomarker for predicting short-term risk of cardiovascular events

Andrea Cappozzo, Cathal McCrory, Oliver Robinson, Anna Freni Sterrantino, Carlotta Sacerdote, Vittorio Krogh, Salvatore Panico, Rosario Tumino, Licia Iacoviello, Fulvio Ricceri, Sabina Sieri, Paolo Chiodini, Gareth J. McKay, Amy Jayne McKnight, Frank Kee, Ian S. Young, Bernadette McGuinness, Eileen M. Crimmins, Thalida Em Arpawong, Rose Anne Kenny, Aisling O’Halloran, Silvia Polidoro, Giuliana Solinas, Paolo Vineis, Francesca Ieva … & Giovanni Fiorito
Additional file 2. Supplementary Tables S1, S2, and S3.

Database of plant-flower visitor interactions from Ireland

Laura Russo, Una Fitzpatrick, Michelle Larkin, Sarah Mullen, Eileen Power, Dara Stanley, Cian White, Aoife O'Rourke & Jane Stout
Beneficial insects provide valuable services upon which we rely, including pollination. Pollinator conservation is a global priority, and a significant concern in Ireland, where over half of extant bee species have declined significantly in recent decades. As flower-visiting insects rely on flowering plants, one way to conserve and promote pollinator populations is to protect high-quality habitat. We analysed the structure of insect-flower interactions from multiple habitat categories in a large database of interactions from Ireland....

Registration Year

  • 2022
    18

Resource Types

  • Dataset
    18

Affiliations

  • Trinity College Dublin
    18
  • Queen's University Belfast
    3
  • University College Cork
    3
  • National University of Ireland, Galway
    3
  • Technological University Dublin
    3
  • University of Oxford
    3
  • Istituto Neurologico Mediterraneo
    2
  • University of Insubria
    2
  • University of Sassari
    2
  • Royal College of Surgeons in Ireland
    2