1,081 Works

Additional file 7 of Comparative analysis of the complete chloroplast genomes of six threatened subgenus Gynopodium (Magnolia) species

Huanhuan Xie, Lei Zhang, Cheng Zhang, Hong Chang, Zhenxiang Xi & Xiaoting Xu
Additional file 7: Table S4. Accession numbers of the CPGs used in the phylogenetic analysis.

Additional file 1 of MetaRNN: differentiating rare pathogenic and rare benign missense SNVs and InDels using deep learning

Chang Li, Degui Zhi, Kai Wang & Xiaoming Liu
Additional file 1: Includes 11 tables for training and testing data sets used in the study. The names of the tables are: Table S1. Training variants for MetaRNN; Table S2. Training variants for MetaRNN-indel; Table S3. Summary statistics for test datasets used to evaluate MetaRNN; Table S4. RNTS validation data set for MetaRNN model evaluation; Table S5. RCTS validation data set for MetaRNN model evaluation; Table S6. AF-RNTS validation data set for MetaRNN model evaluation;...

Additional file 1 of MetaRNN: differentiating rare pathogenic and rare benign missense SNVs and InDels using deep learning

Chang Li, Degui Zhi, Kai Wang & Xiaoming Liu
Additional file 1: Includes 11 tables for training and testing data sets used in the study. The names of the tables are: Table S1. Training variants for MetaRNN; Table S2. Training variants for MetaRNN-indel; Table S3. Summary statistics for test datasets used to evaluate MetaRNN; Table S4. RNTS validation data set for MetaRNN model evaluation; Table S5. RCTS validation data set for MetaRNN model evaluation; Table S6. AF-RNTS validation data set for MetaRNN model evaluation;...

Influence of CYP3A5, IL-10 polymorphisms and metabolism rate on tacrolimus exposure in renal post-transplant recipients - Supplementary Material

Xi Cheng, Yuhao Chen, Lei Zhang, Biwen Chen, Dake Yang, Weihuang Chen, Pengli Zhu, Zhuo Fang & Zhaolin Chen.
Primers sequence of CYP3A5 and IL-10 Polymorphisms for PCR amplification.

Additional file 14 of Evolution and function of developmentally dynamic pseudogenes in mammals

Sheng Hu Qian, Lu Chen, Yu-Li Xiong & Zhen-Xia Chen
Additional file 14: Table S13. Expression level of mouse DDPs in developmental transcriptome.

Additional file 5 of Evolution and function of developmentally dynamic pseudogenes in mammals

Sheng Hu Qian, Lu Chen, Yu-Li Xiong & Zhen-Xia Chen
Additional file 5: Table S4. GO enrichment for coding genes co-expressed with dynamic pseudogenes.

Additional file 11 of Evolution patterns of NBS genes in the genus Dendrobium and NBS-LRR gene expression in D. officinale by salicylic acid treatment

Jiapeng Yang, Caijun Xiong, Siyuan Li, Cheng Zhou, Lingli Li, Qingyun Xue, Wei Liu, Zhitao Niu & Xiaoyu Ding
Additional file 11.

Additional file 4 of Evolution patterns of NBS genes in the genus Dendrobium and NBS-LRR gene expression in D. officinale by salicylic acid treatment

Jiapeng Yang, Caijun Xiong, Siyuan Li, Cheng Zhou, Lingli Li, Qingyun Xue, Wei Liu, Zhitao Niu & Xiaoyu Ding
Additional file 4.

Additional file 2 of Prenatal diagnosis and mRNA profiles of fetal tetralogy of Fallot

Zhongshan Gou, Yan Zhou, Hongjing Jia, Zhong Yang, Qian Zhang & Xinxin Yan
Additional file 2: Table S1. Differential lncRNAs between TOF and control groupincluding 21 up- and 73 down-regulated lncRNAs. Table S2. Differential mRNAs between TOF and control groupincluding 41 up- and 42 down-regulated genes. Table S3. lncRNA correlations to mRNA showed difference betweenTOF and control group.

Additional file 1 of Ascorbic acid 6-palmitate modulates microglia M1/M2 polarization in lipopolysaccharide-stimulated BV-2 cells via PERK/elF2α mediated endoplasmic reticulum stress

Qian Li, Yao Wu, Xue-shen Chen, Tao Zeng, Lin-ling Liu, Zi-qi Feng, Dan-yang Liu, Ling Zhu & Li-hong Wan
Additional file 1: Supplementary figure 1. A mRNA levels of grp78 and chop in TM-stimulated BV-2 cells; B mRNA levels of inos and il-10 in TM-stimulated BV-2 cells; C mRNA levels of grp78 and chop in 4-PBA-stimulated BV-2 cells. B mRNA levels of inos and il-10 4-PBA-stimulated BV-2 cells. Supplementary figure 2. A Full-length blots/gels of β-actin; B Full-length blots/gels of PERK; C Full-length blots/gels p-PREK. All of them were repeated three times. Supplementary figure...

Population genomics of emerging Elizabethkingia anophelis pathogens reveals potential outbreak and rapid global dissemination

Shaohua Hu, Hao Xu, Xiaohua Meng, Xiangxiang Bai, Junli Xu, Jinru Ji, Chaoqun Ying, Yunbo Chen, Ping Shen, Yunxiao Zhou, Beiwen Zheng & Yonghong Xiao
Elizabethkingia anophelis is an emerging species and has increasingly been reported to cause life-threatening infections and even outbreaks in humans. Nevertheless, there is little data regarding the E. anophelis geographical distribution, phylogenetic structure, and transmission across the globe, especially in Asia. We utilize whole-genome sequencing (WGS) data to define a global population framework, phylogenetic structure, geographical distribution, and transmission evaluation of E. anophelis pathogens. The geographical distribution diagram revealed the emerging pathogenic bacteria already distributed...

Population genomics of emerging Elizabethkingia anophelis pathogens reveals potential outbreak and rapid global dissemination

Shaohua Hu, Hao Xu, Xiaohua Meng, Xiangxiang Bai, Junli Xu, Jinru Ji, Chaoqun Ying, Yunbo Chen, Ping Shen, Yunxiao Zhou, Beiwen Zheng & Yonghong Xiao
Elizabethkingia anophelis is an emerging species and has increasingly been reported to cause life-threatening infections and even outbreaks in humans. Nevertheless, there is little data regarding the E. anophelis geographical distribution, phylogenetic structure, and transmission across the globe, especially in Asia. We utilize whole-genome sequencing (WGS) data to define a global population framework, phylogenetic structure, geographical distribution, and transmission evaluation of E. anophelis pathogens. The geographical distribution diagram revealed the emerging pathogenic bacteria already distributed...

Data for: Climate and forest attributes influence aboveground biomass of deciduous broadleaf forests in China

Guoping Chen, Qiong Cai, Suhui Ma, Yuhao Feng, Wenjing Fang, Chengjun Ji, Jiangling Zhu, Zhiheng Wang, Shaopeng Wang, Zhiyao Tang & Jingyun Fang
Forests provide a huge carbon pool, a substantial portion of which is stored in aboveground biomass (AGB). Deciduous broadleaf forests in China are an essential component of global deciduous broadleaf forests, yet the impacts of climate and forest attributes on their AGB are not well understood. Using a comprehensive forest inventory database available from 772 plots distributed across the temperate and subtropical deciduous broadleaf forests in China (23.51°-42.53° N and 104.24°-128.27° E), we applied variance...

sj-rar-4-tej-10.1177_20417314221132093 – Supplemental material for A new cell-free therapeutic strategy for liver regeneration: Human placental mesenchymal stem cell-derived extracellular vesicles

Ting Li, Yu Fu, Zeyi Guo, Honglei Zhu, Hangyu Liao, Xiaoge Niu, Lin Zhou, Shunjun Fu, Yang Li, Shao Li, Lujia Wang, Yizhou Zheng, Lei Feng, Yi Gao & Guolin He
Supplemental material, sj-rar-4-tej-10.1177_20417314221132093 for A new cell-free therapeutic strategy for liver regeneration: Human placental mesenchymal stem cell-derived extracellular vesicles by Ting Li, Yu Fu, Zeyi Guo, Honglei Zhu, Hangyu Liao, Xiaoge Niu, Lin Zhou, Shunjun Fu, Yang Li, Shao Li, Lujia Wang, Yizhou Zheng, Lei Feng, Yi Gao and Guolin He in Journal of Tissue Engineering

sj-rar-4-tej-10.1177_20417314221132093 – Supplemental material for A new cell-free therapeutic strategy for liver regeneration: Human placental mesenchymal stem cell-derived extracellular vesicles

Ting Li, Yu Fu, Zeyi Guo, Honglei Zhu, Hangyu Liao, Xiaoge Niu, Lin Zhou, Shunjun Fu, Yang Li, Shao Li, Lujia Wang, Yizhou Zheng, Lei Feng, Yi Gao & Guolin He
Supplemental material, sj-rar-4-tej-10.1177_20417314221132093 for A new cell-free therapeutic strategy for liver regeneration: Human placental mesenchymal stem cell-derived extracellular vesicles by Ting Li, Yu Fu, Zeyi Guo, Honglei Zhu, Hangyu Liao, Xiaoge Niu, Lin Zhou, Shunjun Fu, Yang Li, Shao Li, Lujia Wang, Yizhou Zheng, Lei Feng, Yi Gao and Guolin He in Journal of Tissue Engineering

Additional file 1 of Deciphering chloramphenicol biotransformation mechanisms and microbial interactions via integrated multi-omics and cultivation-dependent approaches

Jiayu Zhang, Xiaoyan Li, Uli Klümper, Huaxin Lei, Thomas U. Berendonk, Fangliang Guo, Ke Yu, Chao Yang & Bing Li
Additional file 1: Table S1. The taxonomy, quality, and genome size of 18 MAGs. Table S2. The taxonomy, quality, and genomic information of seven isolated strains. Table S3. The information of proteins related to CAP biotransformation in Sphingomonas sp. CL5.1 revealed by proteomics.

Additional file 19 of Scoring model based on the signature of non-m6A-related neoantigen-coding lncRNAs assists in immune microenvironment analysis and TCR-neoantigen pair selection in gliomas

Wenbo Zhao, Yibo Wu, Feihu Zhao, Zhiyi Xue, Wenyu Liu, Zenxin Cao, Zhimin Zhao, Bin Huang, Mingzhi Han & Xingang Li
Additional file 19: Table S8. Identified common TCR patterns in GBM and LGG samples.

Random forest algorithm-based accurate prediction of rat acute oral toxicity

Linrong Xiao, Jiyong Deng, Liping Yang, Xianwei Huang & Xinliang Yu
Predicting acute oral toxicity LD50 of chemicals in rats is a challenge since many factors affect toxicity data. In this paper, 40 descriptors were successfully used to develop a quantitative structure–activity relationship model for 8448 rat acute oral toxicity logLD50 by applying the random forest (RF) algorithm. To develop the optimal RF model, a training set (5914 chemicals) was used to establish models, a validation set (1267 chemicals) used to tune RF parameters and a...

Additional file 14 of Scoring model based on the signature of non-m6A-related neoantigen-coding lncRNAs assists in immune microenvironment analysis and TCR-neoantigen pair selection in gliomas

Wenbo Zhao, Yibo Wu, Feihu Zhao, Zhiyi Xue, Wenyu Liu, Zenxin Cao, Zhimin Zhao, Bin Huang, Mingzhi Han & Xingang Li
Additional file 14: Table S3. Primer sequences used for qRT-PCR.

Additional file 16 of Scoring model based on the signature of non-m6A-related neoantigen-coding lncRNAs assists in immune microenvironment analysis and TCR-neoantigen pair selection in gliomas

Wenbo Zhao, Yibo Wu, Feihu Zhao, Zhiyi Xue, Wenyu Liu, Zenxin Cao, Zhimin Zhao, Bin Huang, Mingzhi Han & Xingang Li
Additional file 16: Table S5. The correlations between non-m6A or m6A regulators and related-lncRNAs.

Additional file 3 of Comparison of anther transcriptomes in response to cold stress at the reproductive stage between susceptible and resistant Japonica rice varieties

Zhenhua Guo, Wendong Ma, Lijun Cai, Tao Guo, Hao Liu, Linan Wang, Junliang Liu, Bo Ma, Yanjiang Feng, Chuanxue Liu & Guojun Pan
Supplementary Material 3

Additional file 5 of Comparison of anther transcriptomes in response to cold stress at the reproductive stage between susceptible and resistant Japonica rice varieties

Zhenhua Guo, Wendong Ma, Lijun Cai, Tao Guo, Hao Liu, Linan Wang, Junliang Liu, Bo Ma, Yanjiang Feng, Chuanxue Liu & Guojun Pan
Supplementary Material 5

Additional file 6 of Comparison of anther transcriptomes in response to cold stress at the reproductive stage between susceptible and resistant Japonica rice varieties

Zhenhua Guo, Wendong Ma, Lijun Cai, Tao Guo, Hao Liu, Linan Wang, Junliang Liu, Bo Ma, Yanjiang Feng, Chuanxue Liu & Guojun Pan
Supplementary Material 6

Additional file 7 of Comparison of anther transcriptomes in response to cold stress at the reproductive stage between susceptible and resistant Japonica rice varieties

Zhenhua Guo, Wendong Ma, Lijun Cai, Tao Guo, Hao Liu, Linan Wang, Junliang Liu, Bo Ma, Yanjiang Feng, Chuanxue Liu & Guojun Pan
Supplementary Material 7

Additional file 8 of Comparison of anther transcriptomes in response to cold stress at the reproductive stage between susceptible and resistant Japonica rice varieties

Zhenhua Guo, Wendong Ma, Lijun Cai, Tao Guo, Hao Liu, Linan Wang, Junliang Liu, Bo Ma, Yanjiang Feng, Chuanxue Liu & Guojun Pan
Supplementary Material 8

Registration Year

  • 2022
    1,081

Resource Types

  • Dataset
    1,081

Affiliations

  • Peking University
    1,081
  • Chinese Academy of Medical Sciences & Peking Union Medical College
    680
  • Zhejiang University
    624
  • Huazhong University of Science and Technology
    584
  • Shanghai Jiao Tong University
    579
  • Capital Medical University
    568
  • Sichuan University
    564
  • Chinese Academy of Sciences
    499
  • Fudan University
    498
  • University of Chinese Academy of Sciences
    450