61 Works

Data from: Joint effects of environmental filtering and dispersal limitation on species assemblage of the Tibetan Plateau

Jiekun He, Haoxian Lin, Runxi Wang, Chao Dai, Hongyin Yu, Jiahao Tu, Jiehua Yu & Haisheng Jiang
Aim Mountains harbour a rich and non-random cluster of species, yet knowledge on the species’ biological attributes that support species coexistence in the montane community is limited. Here, we investigated the association of species occurrence on the Tibetan Plateau with species’ morphological, ecological or evolutionary constraints. Location Tibetan Plateau (TP) Taxon Mammals and birds Methods We tested whether species occurrence on the TP correlates with morphological, ecological, or evolutionary constraints using the spatial distribution, phylogeny,...

A large-scale assessment of ant diversity across the Brazilian Amazon Basin: integrating geographic, ecological, and morphological drivers of sampling bias

Joudellys Andrade-Silva, Fabricio Baccaro, Lívia Prado, Benoit Guenard, Dan Warren, Jamie Kass, Evan Economo & Rogerio Silva
Tropical ecosystems are often biodiversity hotspots, and invertebrates represent the main underrepresented component of diversity in large-scale analyses. This problem is partly related to the scarcity of data widely available to conduct these studies and the lack of systematic organization of knowledge about invertebrates’ distributions in biodiversity hotspots. Here, we introduce and analyze a comprehensive data compilation of Amazonian ant diversity. Using records from 1817 to 2020 from both published and unpublished sources, we describe...

Data from: Whole-genome phylogeography of the Blue-faced honeyeater (Entomyzon cyanotis) and discovery and characterization of a neo-Z chromosome

Scott Edwards, John Burley, Sophie Orzechowski & Yun Wa Sin
Whole-genome surveys of genetic diversity and geographic variation often yield unexpected discoveries of novel structural variation, which long-read DNA sequencing can help clarify. Here we report on whole-genome phylogeography of a bird exhibiting classic vicariant geographies across Australia and New Guinea, the Blue-faced honeyeater (Entomyzon cyanotis), and the discovery and characterization of a novel neo-Z chromosome by long-read sequencing. Using short-read genome-wide SNPs, we inferred population divergence events within E. cyanotis across the Carpentarian and...

Additional file 3 of Circulating tumor DNA integrating tissue clonality detects minimal residual disease in resectable non-small-cell lung cancer

Siwei Wang, Ming Li, Jingyuan Zhang, Peng Xing, Min Wu, Fancheng Meng, Feng Jiang, Jie Wang, Hua Bao, Jianfeng Huang, Binhui Ren, Mingfeng Yu, Ninglei Qiu, Houhuai Li, Fangliang Yuan, Zhi Zhang, Hui Jia, Xinxin Lu, Shuai Zhang, Xiaojun Wang, Youtao Xu, Wenjia Xia, Tongyan Liu, Weizhang Xu, Xinyu Xu … & Rong Yin
Additional file 3. Table S3: Performance of three strategies.

Additional file 2 of Mucosal-associated invariant T cells predict increased acute graft-versus-host-disease incidence in patients receiving allogeneic hematopoietic stem cell transplantation

Zhao Wang, Sudong Zhang, Xiaoyu Zhang, Li Liu, Lukun Zhou, Yuyan Shen, Rongli Zhang, Yi He, Donglin Yang, Erlie Jiang, Xiaoming Feng, Jiaxi Zhou, Tao Cheng, Mingzhe Han & Sizhou Feng
Additional file 2: List of differentially expressed gene in RNA-seq.

Additional file 2 of Mucosal-associated invariant T cells predict increased acute graft-versus-host-disease incidence in patients receiving allogeneic hematopoietic stem cell transplantation

Zhao Wang, Sudong Zhang, Xiaoyu Zhang, Li Liu, Lukun Zhou, Yuyan Shen, Rongli Zhang, Yi He, Donglin Yang, Erlie Jiang, Xiaoming Feng, Jiaxi Zhou, Tao Cheng, Mingzhe Han & Sizhou Feng
Additional file 2: List of differentially expressed gene in RNA-seq.

Figure data for \"High Parametric Efficiency in Laser Cavity-Soliton Microcombs\"

Antonio Cutrona, Maxwell Rowley, Debayan Das, Luana Olivieri, Luke Peters, Sai Ting Chu, Brent E. Little, Roberto Morandotti, David Moss, Juan Sebastian Totero Gongora, Marco Peccianti & Alessia Pasquazi
Figure data for: High Parametric Efficiency in Laser Cavity-Soliton Microcombs Antonio Cutrona1,2, Maxwell Rowley2, Debayan Das1,2 , Luana Olivieri 1,2, Luke Peters 1,2, Sai T. Chu3, Brent E. Little4, Roberto Morandotti5, David J. Moss6, Juan Sebastian Totero Gongora1,2, Marco Peccianti1,2, and Alessia Pasquazi1,2,* 1 Emergent Photonics Research Centre, Dept. of Physics, Loughborough University, Loughborough, LE11 3TU, England, UK 2Emergent Photonics Lab (Epic), Department of Physics and Astronomy, University of Sussex, Brighton, BN1 9QH, UK 3...

Supporting data for \"Effect of Radix Rehmanniae and its active compounds against neurological autoimmune disease through regulating oxidative stress-induced immunodysfunction\"

Meiling Wu
This folder contains the data obtained for the thesis entitled "Effect of Radix Rehmanniae and its active compounds against neurological autoimmune disease through regulating oxidative stress-induced immunodysfunction", including the FACS data, immunohistochemical images, and the relevant quantification and analysis of data. This research is to study the peroxynitrite-mediated Tregs reduction and dysfunction in the periphery immune system could be a critical pathological process to aggravating Th1/Th17 infiltration and CNS damage in MS/EAE pathogenesis. Moreover, we...

Testing the reliability and ecological implications of ramping rates in the measurement of Critical Thermal maximum

Chi Man Leong, Toby P. N. Tsang & Benoit Guénard
Critical Thermal maximum (CTmax) is often used to characterize the upper thermal limits of organisms and represents a key trait for evaluating the fitness of ectotherms. The lack of standardization in CTmax assays has, however, introduced methodological problems in its measurement, which can lead to questionable estimates of species’ upper thermal limits. Focusing on ants, which are model organisms for research on thermal ecology, we aim to obtain a reliable ramping rate that will yield...

No consistent effect of daytime versus night-time measurement of thermal tolerance in nocturnal and diurnal lizards

Pauline C Dufour, Toby PN Tsang, Susana Clusella-Trullas & Timothy C Bonebrake
While essential in understanding impacts of climate change for organisms, diel variation remains an understudied component of temporal variation in thermal tolerance limits (i.e. the critical thermal minimum (CTmin) and maximum (CTmax)). For example, a higher Ctmax might be expected for an individual if the measurement is taken during the day (when heat stress is most likely to occur) instead of at night. We measured thermal tolerance (Ctmin and Ctmax) during both the daytime and...

Data from: Decipher soil organic carbon dynamics and driving forces across China using machine learning

Huiwen Li, Yiping Wu, Shuguang Liu, Jingfeng Xiao, Wenzhi Zhao, Ji Chen, Georgii Alexandrov & Yue Cao
The dynamics of soil organic carbon (SOC) play a critical role in modulating global warming. However, the long-term spatiotemporal changes of SOC at large scale and the impacts of driving forces remain unclear. In this study, we investigated the dynamics of SOC in different soil layers across China through the 1980s to 2010s using a machine learning approach and quantified the impacts of the key factors based on factorial simulation experiments. Our results showed that...

The global distribution of known and undiscovered ant biodiversity

Jamie Kass, Benoit Guénard, Kenneth Dudley, Clinton Jenkins, Fumika Azuma, Brian Fisher, Catherine Parr, Heloise Gibb, John Longino, Philip Ward, Anne Chao, David Lubertazzi, Michael Weiser, Walter Jetz, Robert Guralnick, Rumsaïs Blatrix, James Des Lauriers, David Donoso, Christos Georgiadis, Kiko Gomez, Peter Hawkes, Robert Johnson, John Lattke, Joe MacGown, William Mackay … & Evan Economo
Invertebrates constitute the majority of animal species and are critical for ecosystem functioning and services. Nonetheless, global invertebrate biodiversity patterns and their congruences with vertebrates remain largely unknown. We resolve the first high-resolution (~20-km) global diversity map for a major invertebrate clade, ants, using biodiversity informatics, range modeling, and machine learning to synthesize existing knowledge and predict the distribution of undiscovered diversity. We find that ants and different vertebrate groups have distinct features in their...

Home and hub: pet trade and traditional medicine impact reptile populations in source locations and destinations

Pauline Dufour, Elliott Miot, Tsz Chun So, Shun Long Tang, Emily E. Jones, Tsz Ching Kong, Felix Landry Yuan, Yik-Hei Sung, Caroline Dingle & Timothy Carlton Bonebrake
The pet trade and Traditional Chinese Medicine (TCM) consumption are major drivers of global biodiversity loss. Tokay geckos (Gekko gecko) are among the most traded reptile species worldwide. In Hong Kong, pet and TCM markets sell tokay geckos while wild populations also persist. To clarify connections between trade sources and destinations, we compared genetics and stable isotopes of wild tokays in local and nonlocal populations to dried individuals from TCM markets across Hong Kong. We...

Supporting data for the \"Development of tailored NGS data analysis pipeline for the diagnosis of Neuromuscular disorders\"

Yao Lei
This dataset is an excel file that summarises information of patients that found potential causal variant(s) or VUS(s) incompatible with the clinical diagnosis. It includes patients' gender, symptom onset age, age at last follow-up, clinical presentation, provisional clinical diagnosis, prior genetic test and results, availability of the WES and WGS data, and WES and WGS of their parents.
The first sheet is the patients that found potential causal variants. The last three columns are...

Supporting data for \"ANOXIA-INDUCED SUSPENDED ANIMATION AND RECOVERY IN SACCHAROMYCES CEREVISIAE\"

Zhenni Zhu
This study is to investigate the molecular mechanisms of anoxia-induced suspended animation and recovery in Saccharomyces cerevisiae (budding yeast). A genome-wide deletion gene mutant screening in budding yeast has been performed. The viability of the candidate mutants with single gene knockout was examined by assay based on fluorescent dyes. In addition, live-cell imaging was adopted to investigate how does the candidate gene affect the cellular structure in anoxia. This dataset includes the genome-wide screening data,...

Supporting data for “Development of Microneedle-based vaccine delivery systems and mRNA-based vaccines”.

Chaiyaporn Kuwentrai
Files are separated by Project Title and date. Each major project has one large file with subfiles inside containing raw data, figures, tables and original images. The overall data represents different experimental results from mRNA-based vaccine research and microneedle-based vaccine delivery research. There are 2 disease subtopics including cancer and COVID-19 (nCoV). Major mRNA studies are about measuring vaccine-related responses in animals and comparing different treatments for cancer and COVID-19. Some important data highlight the...

Raw Data for PhD Study (EKHW)

Ka Ho Wong
Raw data for the PhD study (EKHW), including UV-vis absorption, emission, NMR, DLS, TEM and XRD data.

Supporting data for \"Unrevealing Parental Mosaicism: The hidden answer to the recurrence of apparent de novo variants\"

Mianne Lee
In this study, I investigated the diagnostic yield of parental mosaicism in a cohort of 21 families with apparent de novo variants (DNVs) associated with neurodevelopmental disorders, and determined the usefulness of the detection of parental mosaicism to the management and genetic counselling of patients. Buccal and sperm samples were collected from the parents to detect potential parental mosaicism by digital PCR (dPCR)/droplet digital PCR (ddPCR), with blocker displacement amplification (BDA) whenever possible.
This...

Figure data for \"High Parametric Efficiency in Laser Cavity-Soliton Microcombs\"

Antonio Cutrona, Maxwell Rowley, Debayan Das, Luana Olivieri, Luke Peters, Sai Ting Chu, Brent E. Little, Roberto Morandotti, David Moss, Juan Sebastian Totero Gongora, Marco Peccianti & Alessia Pasquazi
Figure data for: High Parametric Efficiency in Laser Cavity-Soliton Microcombs Antonio Cutrona1,2, Maxwell Rowley2, Debayan Das1,2 , Luana Olivieri 1,2, Luke Peters 1,2, Sai T. Chu3, Brent E. Little4, Roberto Morandotti5, David J. Moss6, Juan Sebastian Totero Gongora1,2, Marco Peccianti1,2, and Alessia Pasquazi1,2,* 1 Emergent Photonics Research Centre, Dept. of Physics, Loughborough University, Loughborough, LE11 3TU, England, UK 2Emergent Photonics Lab (Epic), Department of Physics and Astronomy, University of Sussex, Brighton, BN1 9QH, UK 3...

Additional file 1 of Circulating tumor DNA integrating tissue clonality detects minimal residual disease in resectable non-small-cell lung cancer

Siwei Wang, Ming Li, Jingyuan Zhang, Peng Xing, Min Wu, Fancheng Meng, Feng Jiang, Jie Wang, Hua Bao, Jianfeng Huang, Binhui Ren, Mingfeng Yu, Ninglei Qiu, Houhuai Li, Fangliang Yuan, Zhi Zhang, Hui Jia, Xinxin Lu, Shuai Zhang, Xiaojun Wang, Youtao Xu, Wenjia Xia, Tongyan Liu, Weizhang Xu, Xinyu Xu … & Rong Yin
Additional file 1. Table S1: Patient demography.

Additional file 21 of Transcriptomic analysis of paternal behaviors in prairie voles

Florian Duclot, Yan Liu, Samantha K. Saland, Zuoxin Wang & Mohamed Kabbaj
Additional file 21. Number of immediate early genes (IEG) in the genes differentially expressed in the medial preoptic area (MPOA), nucleus accumbens (NAc), and lateral septum (LS).

Additional file 23 of Transcriptomic analysis of paternal behaviors in prairie voles

Florian Duclot, Yan Liu, Samantha K. Saland, Zuoxin Wang & Mohamed Kabbaj
Additional file 23. Functional enrichment for modules and groups of modules derived from the weighted gene co-expression analysis (WGCNA). For each pairwise group of modules, the functional enrichments in gene ontologies (GO) of the biological processes (BP), cellular components (CC), and molecular functions (MF) categories as well as in pathways from the Kyoto Encyclopedia of Genes and Genomes (KEGG).

Additional file 23 of Transcriptomic analysis of paternal behaviors in prairie voles

Florian Duclot, Yan Liu, Samantha K. Saland, Zuoxin Wang & Mohamed Kabbaj
Additional file 23. Functional enrichment for modules and groups of modules derived from the weighted gene co-expression analysis (WGCNA). For each pairwise group of modules, the functional enrichments in gene ontologies (GO) of the biological processes (BP), cellular components (CC), and molecular functions (MF) categories as well as in pathways from the Kyoto Encyclopedia of Genes and Genomes (KEGG).

Additional file 14 of Transcriptomic analysis of paternal behaviors in prairie voles

Florian Duclot, Yan Liu, Samantha K. Saland, Zuoxin Wang & Mohamed Kabbaj
Additional file 14. Functional enrichment of genes differentially expressed in the medial preoptic area (MPOA), the nucleus accumbens (NAc), or the lateral septum (LS). For each pairwise comparison, the functional enrichments in gene ontologies of the biological processes (BP), cellular components (CC), and molecular functions (MF) categories as well as in pathways from the Kyoto Encyclopedia of Genes and Genomes (KEGG) were tested for the differentially expressed genes up- or down-regulated (UP, and DOWN, respectively)....

The gut microbiome variability of a butterflyfish increases on severely degraded Caribbean reefs

Friederike Clever, Jade M. Sourisse, Richard F. Preziosi, Jonathan A. Eisen, E. Catalina Rodriguez-Guerra, Jarrod J. Scott, Laetitia G.E. Wilkins, Andrew H. Altieri, W. Owen McMillan & Matthieu Leray
Environmental degradation has the potential to alter key mutualisms that underlie the structure and function of ecological communities. How microbial communities associated with fishes vary across populations and in relation to habitat characteristics remains largely unknown despite their fundamental roles in host nutrition and immunity. We find significant differences in the gut microbiome composition of a facultative coral-feeding butterflyfish (Chaetodon capistratus) across Caribbean reefs that differ markedly in live coral cover (∼0–30%). Fish gut microbiomes...

Registration Year

  • 2022
    61

Resource Types

  • Dataset
    61

Affiliations

  • University of Hong Kong
    61
  • Sun Yat-sen University
    24
  • Capital Medical University
    24
  • Shanghai Jiao Tong University
    24
  • Peking University
    21
  • Wuhan University
    21
  • Shandong Academy of Medical Science
    21
  • Guilin Medical University
    19
  • Second Military Medical University
    19
  • Second Xiangya Hospital of Central South University
    19