Additional file 4: Supplemental Table 3. Protein Ontology representation of SARS-CoV-2 proteins. Comparative information in RefSeq and UniProtKB is also provided.

Additional file 12: Table S9. Differentially expressed lncRNAs in atm mutated flies.

Additional file 13: Table S10. Differentially expressed lncRNAs in atm mutated flies after X-ray irradiation.

Additional file 6: Table S4. List of lipids in intramuscular fat correlated with ELOVL3 expression in pectorals.

Additional file 7: Table S5. Data sources for red jungle fowl and layers used in this study.

Additional file 7: Table S5. Data sources for red jungle fowl and layers used in this study.

Additional file 1: Table S1. Association analysis of 51 SNPs in the ELOVL gene family with growth, carcass and meat quality traits in Gushi ×Anka F2 chickens.

Additional file 4: Table S3. Putative ERE and AP1 element in chicken ELOVL genes promoter.

Additional file 1: Table S1. Association analysis of 51 SNPs in the ELOVL gene family with growth, carcass and meat quality traits in Gushi ×Anka F2 chickens.

Additional file 4.

Additional file 3.

Mitochondria are best known for synthesizing ATP through the tricarboxylic acid cycle and oxidative phosphorylation. The cytoplasmic mitochondrial DNA (mtDNA) is important for maintaining the function. This study was designed to reveal the effect of mtDNA on chicken body measurement traits (BMTs). A population of 605 Wenshang Barred chickens were recorded BMTs, including body slope length, keel length, chest width, etc. The single-nucleotide polymorphisms (SNPs) of their mitogenomes were detected by PCR amplification and DNA...

Additional file 5: Table S2. List of large repeat sequences in the CPGs of six subgenus Gynopodium species.

Additional file 5: Table S2. List of large repeat sequences in the CPGs of six subgenus Gynopodium species.

Supplementary material 1: Table S1. Taxonomic classification of OTUs detected from Sanghuangporus vaninii fruiting body with total ITS rDNA read numbers. Table S2. The fungal OTUs associated with S. vaninii fruiting body were annotated into trophic modes. Table S3. Trophic modes annotation of associated fungi at genus level. Table S4. Trophic modes and their guilds annotation of fungi associated with S. vaninii fruiting body.

Purpose: The aim of this study is to evaluate whether Mandarin-speaking children with cochlear implants (CIs) demonstrated early lexical composition similar to their hearing peers who were at the same vocabulary level and the extent to which children with CIs were sensitive to linguistic and conceptual properties when developing early lexicon. Method: Participants were 77 Mandarin-speaking children with CIs who received CIs before 30 months of age. Their expressive vocabulary was documented using the Infant...

Acquired immunodeficiency syndrome (AIDS) cannot be completely cured, mainly due to the existence of a latent HIV-1 reservoir. However, our current understanding of the molecular mechanisms underlying the establishment and maintenance of HIV-1 latent reservoir is not comprehensive. Here, using a genome-wide CRISPR-Cas9 activation library screening, we identified E3 ubiquitin ligase F-box protein 34 (FBXO34) and the substrate of FBXO34, heterogeneous nuclear ribonucleoprotein U (hnRNP U) was identified by affinity purification mass spectrometry, as new...

Triple-negative breast cancer (TNBC) is a subtype of breast cancer with a poor prognosis that seriously threatens women’s health. There is still a lack of effective therapeutic targets for TNBC treatment. We conducted a meta-analysis to evaluate the efficacy and safety of programmed cell death protein 1 (PD-1)/programmed death protein ligand 1 (PD-L1) inhibitors in combination with chemotherapy for TNBC patients. We searched PubMed, EMBASE, Cochrane Library, and Web of Science for randomized controlled trials...

HOXA4 is a novel oncogene that has been observed in many kinds of tumors, but its role during glioma carcinogenesis and its clinical significance in diagnosing and prognosis human glioma remains unknown. In the present study, the Chinese Glioma Atlas (CGGA)-RNA sequencing database, CGGA microarray, and The Cancer Genome Atlas (TCGA)-RNA seq data from 1674 glioma patients were obtained from online databases and analyzed using quantitative reverse transcription-polymerase chain reaction (RT-qPCR) to detect changes in...

Aim: Niche dynamics of invasive alien plants (IAPs) play pivotal roles in biological invasion. Ageratina adenophora—one of the most aggressive IAPs in China and some parts of the world—poses severe ecological and socioeconomic threats. However, the spatiotemporal niche dynamics of A. adenophora in China remain unknown, which we aimed to elucidate in the present study. Location: China, Mexico Methods: Using a unifying framework, we reconstructed the climate niche dynamics of. adenophora and applied the optimal...

Additional file 3: Table S3. Length distribution of putative IBD tracts between populations and within populations. WE, wild European; CA, cultivated Asian; WE, wild European; CE, cultivated European. Bin size = 500 bp.

Additional file 13: Table S13. Names and sequences (5’ to 3’) of all oligonucleotide primers used in this study.

Additional file 4: Table S4. Numbers of IBD tracts in pear genomes (500 kb window) in 10 comparisons.

Additional file 6: Table S6. Genes in IBD-enriched regions (IBD-ERs) identified between wild Asian and cultivated Asian pears.

Additional file 6: Table S6. Genes in IBD-enriched regions (IBD-ERs) identified between wild Asian and cultivated Asian pears.