14 Works

Data from: Arthropod distribution in a tropical rainforest: tackling a four dimensional puzzle

Yves Basset, Lukas Cizek, Philippe Cuénoud, Raphael K. Didham, Vojtech Novotny, Frode Ødegaard, Tomas Roslin, Alexey K. Tishechkin, Jürgen Schmidl, Neville N. Winchester, David W. Roubik, Henri-Pierre Aberlenc, Johannes Bail, Héctor Barrios, Jonathan R. Bridle, Gabriela Castaño-Meneses, Bruno Corbara, Gianfranco Curletti, Wesley Duarte Da Rocha, Domir De Bakker, Jacques H.C. Delabie, Alain Dejean, Laura L. Fagan, Andreas Floren, Roger L. Kitching … & Jacques H. C. Delabie
Quantifying the spatio-temporal distribution of arthropods in tropical rainforests represents a first step towards scrutinizing the global distribution of biodiversity on Earth. To date most studies have focused on narrow taxonomic groups or lack a design that allows partitioning of the components of diversity. Here, we consider an exceptionally large dataset (113,952 individuals representing 5,858 species), obtained from the San Lorenzo forest in Panama, where the phylogenetic breadth of arthropod taxa was surveyed using 14...

Data from: Heme pathway evolution in kinetoplastid protists

Ugo Pierre Cenci, Daniel Moog, Bruce A. Curtis, Goro Tanifuji, Laura Eme, Julius Lukeš & John M. Archibald
Background: Kinetoplastea is a diverse protist lineage composed of several of the most successful parasites on Earth, organisms whose metabolisms have coevolved with those of the organisms they infect. Parasitic kinetoplastids have emerged from free-living, non-pathogenic ancestors on multiple occasions during the evolutionary history of the group. Interestingly, in both parasitic and free-living kinetoplastids, the heme pathway—a core metabolic pathway in a wide range of organisms—is incomplete or entirely absent. Indeed, Kinetoplastea investigated thus far...

Data from: Morphological identification and single-cell genomics of marine diplonemids

Ryan M. R. Gawryluk, Javier Del Campo, Noriko Okamoto, Jurgen F. H. Strassert, Julius Lukes, Thomas A. Richards, Alexandra Z. Worden, Alyson E. Santoro & Patrick J. Keeling
Recent global surveys of marine biodiversity have revealed that a group of organisms known as “marine diplonemids” constitutes one of the most abundant and diverse planktonic lineages [1]. Though discovered over a decade ago [2 and 3], their potential importance was unrecognized, and our knowledge remains restricted to a single gene amplified from environmental DNA, the 18S rRNA gene (small subunit [SSU]). Here, we use single-cell genomics (SCG) and microscopy to characterize ten marine diplonemids,...

Data from: Disentangling the interplay of generative and vegetative propagation among different functional groups during gap colonization in meadows

Alena Vítová, Petr Macek & Jan Lepš
Meadow plant communities are commonly driven by strong competition, and the colonization of gaps plays an important role in the maintenance of their species diversity. Despite this, species-specific information about the dynamics of vegetative and generative propagation, and on the role of seed bank and seed rain, is rather scarce. In a 3-year manipulative experiment, we aimed to disentangle the effects of seed bank, seed rain and vegetative propagation in vegetation and during colonization of...

Data from: Network reorganization and breakdown of an ant–plant protection mutualism with elevation

Nichola S. Plowman, Amelia S.C. Hood, Jimmy Moses, Conor Redmond, Vojtech Novotny, Petr Klimeš, Tom M. Fayle & Amelia S. C. Hood
Both the abiotic environment and the composition of animal and plant communities change with elevation. For mutualistic species, these changes are expected to result in altered partner availability, and shifts in context-dependent benefits for partners. To test these predictions, we assessed the network structure of terrestrial ant-plant mutualists and how the benefits to plants of ant inhabitation changed with elevation in tropical forest in Papua New Guinea. At higher elevations, ant-plants were rarer, species richness...

Data from: Fine-scale vertical stratification and guild composition of saproxylic beetles in lowland and montane forests: similar patterns despite low faunal overlap

Matthias Weiss, Jiří Procházka, Jiří Schlaghamerský & Lukas Cizek
The finer scale patterns of arthropod vertical stratification in forests are rarely studied and poorly understood. Further, there are no studies investigating whether and how altitude affects arthropod vertical stratification in temperate forests. We therefore investigated the fine-scale vertical stratification of diversity and guild structure of saproxylic beetles in temperate lowland and montane forests and compared the resulting patterns between the two habitats. The beetles were sampled with flight intercept traps arranged into vertical transects...

Data from: Exotic or not, leaf trait dissimilarity modulates the effect of dominant species on mixed litter decomposition

Genevieve E. Finerty, Francesco De Bello, Karolína Bílá, Matty P. Berg, André T. C. Dias, Gianni B. Pezzatti & Marco Moretti
It has long been recognized that leaf traits exert a crucial control on litter decomposition, a key process for nutrient cycling, and that invading species can greatly alter such soil processes via changes in mixed litter trait composition. Trait effects on ecosystem processes are hypothesized to operate via changes in either dominant trait values in the community (often calculated as community weighted mean trait values; CWM) or trait functional diversity (dissimilarity between species trait values;...

Data from: Determinants of litter decomposition rates in a tropical forest: functional traits, phylogeny and ecological succession

Piotr Szefer, Carlos P. Carmona, Kryštof Chmel, Marie Konečná, Martin Libra, Kenneth Molem, Vojtech Novotny, Simon T. Segar, Eva Švamberková, Theodor-Sebastian Topliceanu & Jan Leps
Plant litter decomposition is one of the most important processes in terrestrial ecosystems, as it is a key factor in nutrient cycling. Decomposition rates depend on environmental factors, but also plant traits, as these determine the character of detritus. We measured litter decomposition rate for 57 common tree species displaying a variety of functional traits within four sites in primary and four sites in secondary tropical forest in Madang Province, Papua New Guinea. The phylogenetic...

Data from: Genetic distinction between contiguous urban and rural multimammate mice in Tanzania despite gene flow

Sophie Gryseels, Joëlle Goüy De Bellocq, Rhodes Makundi, Kurt Vanmechelen, Jan Broeckhove, Vladimír Mazoch, Radim Šumbera, , Herwig Leirs & Stuart J. E. Baird
Special conditions are required for genetic differentiation to arise at a local geographical scale in the face of gene flow. The Natal multimammate mouse, Mastomys natalensis, is the most widely distributed and abundant rodent in sub-Saharan Africa. A notorious agricultural pest and a natural host for many zoonotic diseases, it can live in close proximity to man, and appears to compete with other rodents for the synanthropic niche. We surveyed its population genetic structure across...

Data from: Contrasting trait assembly patterns in plant and bird communities along environmental and human-induced land-use gradients

Elena D. Concepción, Lars Götzenberger, Michael P. Nobis, Francesco De Bello, Martin K. Obrist & Marco Moretti
Human-driven environmental changes can induce marked shifts in the functional structure of biological communities with possible repercussion on important ecosystem functions and services. At the same time it remains unclear to which extent these changes may differently affect various types of organisms. We investigated species richness and community functional structure of species assemblages at the landscape scale (1km2 plots) for two contrasting model taxa, i.e., plants (producers and sessile organisms) and birds (consumers and mobile...

Data from: Sunbird hovering behavior is determined by both the forager and resource plant

Eliška Padyšáková & Štěpán Janeček
The long-standing paradigm that pollination systems adapted to hovering birds evolved only in the New World was recently challenged by the discovery of hovering pollination by Old World specialized passerine pollinators. This raises the possibility that hovering pollination may evolve more easily than previously believed, given sufficient selective pressure on plant traits, on nectarivory, or both. We observed foraging behavior by the sunbird Cyanomitra oritis at flowers of the native Old World plant Impatiens sakeriana....

Data from: Assessing vulnerability of functional diversity to species loss: a case study in Mediterranean agricultural systems

Carlos P. Carmona, Irene Guerrero, Manuel B. Morales, Juan J. Oñate & Begoña Peco
Increasing land-use intensification is leading to biodiversity losses world-wide, which can reduce the functioning of ecosystems. However, it is increasingly clear that not all species are equally important for ecosystem processes: whereas the loss of a functionally unique species may reduce the capacity of the community to perform some functions, losing a functionally redundant species should have a much smaller impact. Assessing the vulnerability of functional diversity (FD) to species extinctions can help to predict...

Data from: Speciation in a keystone plant genus is driven by elevation: a case study in New Guinean Ficus

Simon T. Segar, Martin Volf, , Brus Isua, Mentap Sisol, Legi Sam, Katerina Sam, Daniel Souto-Vilarós & Vojtech Novotny
Much of the world's insect and plant biodiversity is found in tropical and subtropical ‘hotspots’, which often include long elevational gradients. These gradients may function as ‘diversity pumps’ and contribute to both regional and local species richness. Climactic conditions on such gradients often change rapidly along short vertical distances, and may result in local adaptation and high levels of population genetic structure in plants and insects. We investigated the population genetic structure of two species...

Data from: Segregated water observed in a putative fish embryo cryopreservative

Oleg Kirichek, Alan K. Soper, Boris Dzyuba & William V. Holt
Development of new cryopreservation strategies has major potential in medicine and agriculture and is critical to the conservation of endangered species that currently cannot be preserved. A critical property of any potential cryopreservative solution is its ability to prevent cell-damaging ice formation during cooling and subsequent heating. This study focuses on the freezing behaviour of promising model cryoprotective solutions. We perform neutron scattering analysis, combined with computer modelling, of the water structure after quench cooling...

Registration Year

  • 2016

Resource Types

  • Dataset


  • University of South Bohemia in České Budějovice
  • Institute of Entomology
  • New Guinea Binatang Research Center
  • Griffith University
  • Swiss Federal Institute for Forest, Snow and Landscape Research
  • National Museum
  • Universidad De Panama
  • University of Antwerp
  • VU University Amsterdam
  • University of Erlangen-Nuremberg