25 Works

Data from: Changes in data sharing and data reuse practices and perceptions among scientists worldwide

Carol Tenopir, Elizabeth D. Dalton, Suzie Allard, Mike Frame, Ivanka Pjesivac, Ben Birch, Danielle Pollock & Kristina Dorsett
The incorporation of data sharing into the research lifecycle is an important part of modern scholarly debate. In this study, the DataONE Usability and Assessment working group addresses two primary goals: To examine the current state of data sharing and reuse perceptions and practices among research scientists as they compare to the 2009/2010 baseline study, and to examine differences in practices and perceptions across age groups, geographic regions, and subject disciplines. We distributed surveys to...

Data from: Conservation planning for offsetting the impacts of development: a case study of biodiversity and renewable energy in the Mojave Desert

Jason Kreitler, Carrie A. Schloss, Oliver Soong, Lee Hannah & Frank W. Davis
Balancing society's competing needs of development and conservation requires careful consideration of tradeoffs. Renewable energy development and biodiversity conservation are often considered beneficial environmental goals. However, the direct footprint and disturbance of renewable energy can displace species' habitat and negatively impact populations and communities if sited without ecological consideration. To mitigate residual impacts, offsets have emerged as a potentially useful tool after trying to avoid, minimize, or restore affected sites. Yet where many species or...

Data from: Testing the depth-differentiation hypothesis in a deepwater octocoral

Andrea M. Quattrini, Iliana B. Baums, Timothy M. Shank, Cheryl L. Morrison & Erik E. Cordes
The depth-differentiation hypothesis proposes that the bathyal region is a source of genetic diversity and an area where there is a high rate of species formation. Genetic differentiation should thus occur over relatively small vertical distances, particularly along the upper continental slope (200–1000 m) where oceanography varies greatly over small differences in depth. To test whether genetic differentiation within deepwater octocorals is greater over vertical rather than geographical distances, Callogorgia delta was targeted. This species...

Data from: Food web heterogeneity and succession in created saltmarshes

Marie C. Nordström, Amanda W. J. Demopoulos, Christine R. Whitcraft, Andrea Rismondo, Patricia McMillan, Jennifer P. Gonzalez & Lisa A. Levin
Ecological restoration must achieve functional as well as structural recovery. Functional metrics for re-establishment of trophic interactions can be used to complement traditional monitoring of structural attributes. In addition, topographic effects on food web structure provide added information within a restoration context; often, created sites may require spatial heterogeneity to effectively match structure and function of natural habitats. We addressed both of these issues in our study of successional development of benthic food web structure,...

Data from: Climate variables explain neutral and adaptive variation within salmonid metapopulations: the importance of replication in landscape genetics

Brian Hand, Ryan Kovach, Clint C. Muhlfeld, Alisa A. Wade, Diane Whited, Shawn Narum, Andrew Matala, Mike Ackerman, Brittany Garner, John Kimball, Jack Stanford, Gordon Luikart, Brian K. Hand, Diane C. Whited, Brittany A. Garner, Jack A. Stanford, John S. Kimball, Shawn R. Narum & Andrew P. Matala
Understanding how environmental variation influences population genetic structure is important for conservation management because it can reveal how human stressors influence population connectivity, genetic diversity, and persistence. We used riverscape genetics modeling to assess whether climatic and habitat variables were related to neutral and adaptive patterns of genetic differentiation (population specific and pairwise FST) within five metapopulations (79 populations, 4,583 individuals) of steelhead trout (Oncorhynchus mykiss) in the Columbia River Basin, USA. Using 151 putatively...

Data from: Suburban watershed nitrogen retention: estimating the effectiveness of stormwater management structures

Benjamin J. Koch, Catherine M. Febria, Roger M. Cooke, Jacob D. Hosen, Matthew E. Baker, Abigail R. Colson, Solange Filoso, Katharine Hayhoe, J. V. Loperfido, Anne M. K. Stoner & Margaret A. Palmer
Excess nitrogen (N) is a primary driver of freshwater and coastal eutrophication globally, and urban stormwater is a rapidly growing source of N pollution. Stormwater best management practices (BMPs) are used widely to remove excess N from runoff in urban and suburban areas, and are expected to perform under a wide variety of environmental conditions. Yet the capacity of BMPs to retain excess N varies; and both the variation and the drivers thereof are largely...

Data from: Spatiotemporal analysis of gene flow in Chesapeake Bay Diamondback Terrapins (Malaclemys terrapin)

Paul E. Converse, Shawn R. Kuchta, Willem M. Roosenburg, Paula F.P. Henry, Tim L. King, G. Michael Haramis & Paula F. P. Henry
There is widespread concern regarding the impacts of anthropogenic activities on connectivity among populations of plants and animals, and understanding how contemporary and historical processes shape metapopulation dynamics is crucial for setting appropriate conservation targets. We used genetic data to identify population clusters and quantify gene flow over historical and contemporary time frames in the Diamondback Terrapin (Malaclemys terrapin). This species has a long and complicated history with humans, including commercial over-harvesting and subsequent translocation...

Data from: Demographic superiority with increased logging in tropical understorey insectivorous birds

Umesh Srinivasan, James E. Hines & Suhel Quader
1. Selective logging is pervasive in the tropics and is among the most urgent threats to tropical biodiversity. The vast areas of logged tropical forest are often vulnerable to relogging, clear-felling, burning or conversion to plantations, despite evidence that logged forests retain a large proportion of tropical forest species at high abundances compared with alternate land uses. However, the demographic processes (e.g. survival, fecundity) that drive community or species properties (e.g. occurrence, density) in response...

Data from: Larger trees suffer most during drought in forests worldwide

Amy C. Bennett, Nathan G. McDowell, Craig D. Allen & Kristina J. Anderson-Teixeira
The frequency of severe droughts is increasing in many regions around the world as a result of climate change. Droughts alter the structure and function of forests. Site- and region-specific studies suggest that large trees, which play keystone roles in forests and can be disproportionately important to ecosystem carbon storage and hydrology, exhibit greater sensitivity to drought than small trees. Here, we synthesize data on tree growth and mortality collected during 40 drought events in...

Data from: Drifting to oblivion? Rapid genetic differentiation in an endangered lizard following habitat fragmentation and drought

Amy G. Vandergast, Dustin A. Wood, Andrew R. Thompson, Mark Fisher, Cameron W. Barrows & Tyler J. Grant
Aim: The frequency and severity of habitat alterations and disturbance are predicted to increase in upcoming decades, and understanding how disturbance affects population integrity is paramount for adaptive management. Although rarely is population genetic sampling conducted at multiple time points, pre- and post-disturbance comparisons may provide one of the clearest methods to measure these impacts. We examined how genetic properties of the federally threatened Coachella Valley fringe-toed lizard (Uma inornata) responded to severe drought and...

Data from: Does natural variation in diversity affect biotic resistance?

Susan Harrison, Howard Cornell & James B. Grace
1. Theories linking diversity to ecosystem function have been challenged by the widespread observation of more exotic species in more diverse native communities. Few studies have addressed the key underlying process by dissecting how community diversity is shaped by the same environmental gradients that determine biotic and abiotic resistance to new invaders. 2. In grasslands on highly heterogeneous soils, we used addition of a recent invader, competitor removal, and structural equation modelling (SEM) to analyse...

Data from: Habitat fragmentation in coastal southern California disrupts genetic connectivity in the Cactus Wren (Campylorhynchus brunneicapillus)

Kelly R. Barr, Barbara E. Kus, Kristine L. Preston, Scarlett Howell, Emily Perkins & Amy G. Vandergast
Achieving long-term persistence of species in urbanized landscapes requires characterizing population genetic structure to understand and manage the effects of anthropogenic disturbance on connectivity. Urbanization over the past century in coastal southern California has caused both precipitous loss of coastal sage scrub habitat and declines in populations of the cactus wren (Campylorhynchus brunneicapillus). Using 22 microsatellite loci, we found that remnant cactus wren aggregations in coastal southern California comprised 20 populations based on strict exact...

Data from: Multiple estimates of effective population size for monitoring a long-lived vertebrate: an application to Yellowstone grizzly bears

Pauline L. Kamath, Mark A. Haroldson, Gordon Luikart, David Paetkau, Craig Whitman & Frank T. Van Manen
Effective population size (Ne) is a key parameter for monitoring the genetic health of threatened populations because it reflects a population's evolutionary potential and risk of extinction due to genetic stochasticity. However, its application to wildlife monitoring has been limited because it is difficult to measure in natural populations. The isolated and well-studied population of grizzly bears (Ursus arctos) in the Greater Yellowstone Ecosystem provides a rare opportunity to examine the usefulness of different Ne...

Data from: Increased land use by Chukchi Sea polar bears in relation to changing sea ice conditions

Karyn D. Rode, Ryan R. Wilson, Eric V. Regehr, Michelle St. Martin, David C. Douglas & Jay Olson
Recent observations suggest that polar bears (Ursus maritimus) are increasingly using land habitats in some parts of their range, where they have minimal access to their preferred prey, likely in response to loss of their sea ice habitat associated with climatic warming. We used location data from female polar bears fit with satellite radio collars to compare land use patterns in the Chukchi Sea between two periods (1986–1995 and 2008–2013) when substantial summer sea-ice loss...

Data from: Onshore industrial wind turbine locations for the United States up to March 2014

Jay E. Diffendorfer, Louisa A. Kramer, Zach H. Ancona & Christopher P. Garrity
Wind energy is a rapidly growing form of renewable energy in the United States. While summary information on the total amounts of installed capacity are available by state, a free, centralized, national, turbine-level, geospatial dataset useful for scientific research, land and resource management, and other uses did not exist. Available in multiple formats and in a web application, these public domain data provide industrial-scale onshore wind turbine locations in the United States up to March...

Data from: Contrasting evolutionary histories of MHC class I and class II loci in grouse - effects of selection and gene conversion

Piotr Minias, Zachary W. Bateson, Linda A. Whittingham, Jeff A. Johnson, Sara Oyler-McCance & Peter O. Dunn
Genes of the major histocompatibility complex (MHC) encode receptor molecules that are responsible for recognition of intra- and extra-cellular pathogens (class I and class II genes, respectively) in vertebrates. Given the different roles of class I and II MHC genes, one might expect the strength of selection to differ between these two classes. Different selective pressures may also promote different rates of gene conversion at each class. Despite these predictions, surprisingly few studies have looked...

Data from: Convergence of soil nitrogen isotopes across global climate gradients

Joseph M. Craine, Andrew J. Elmore, Lixin Wang, Laurent Augusto, W. Troy Baisden, E. N. J. Brookshire, Michael D. Cramer, Niles J. Hasselquist, Erik A. Hobbie, Ansgar Kahmen, Keisuke Koba, J. Marty Kranabetter, Michelle C. Mack, Erika Marin-Spiotta, Jordan R. Mayor, Kendra K. McLauchlan, Anders Michelsen, Gabriela B. Nardoto, Rafael S. Oliveira, Steven S. Perakis, Pablo L. Peri, Carlos A. Quesada, Andreas Richter, Louis A. Schipper, Bryan A. Stevenson … & Bernd Zeller
Quantifying global patterns of terrestrial nitrogen (N) cycling is central to predicting future patterns of primary productivity, carbon sequestration, nutrient fluxes to aquatic systems, and climate forcing. With limited direct measures of soil N cycling at the global scale, syntheses of the 15N:14N ratio of soil organic matter across climate gradients provide key insights into understanding global patterns of N cycling. In synthesizing data from over 6000 soil samples, we show strong global relationships among...

Data from: Recovery of a mining-damaged stream ecosystem

Christopher A. Mebane, Robert J. Eakins, Brian G. Fraser & William J. Adams
This paper presents a 30+ year record of changes in benthic macroinvertebrate communities and fish populations associated with improving water quality in mining-influenced streams. Panther Creek, a tributary to the Salmon River in central Idaho, USA suffered intensive damage from mining and milling operations at the Blackbird Mine that released copper (Cu), arsenic (As), and cobalt (Co) into tributaries. From the 1960s through the 1980s, no fish and few aquatic invertebrates could be found in...

Data from: Effective number of breeders provides a link between interannual variation in stream flow and individual reproductive contribution in a stream salmonid

Andrew R. Whiteley, Jason A. Coombs, Matthew Cembrola, Matthew J. O'Donnell, Mark Hudy, Keith H. Nislow & Benjamin H. Letcher
The effective number of breeders that give rise to a cohort (Nb) is a promising metric for genetic monitoring of species with overlapping generations; however, more work is needed to understand factors that contribute to variation in this measure in natural populations. We tested hypotheses related to interannual variation in Nb in two long-term studies of brook trout populations. We found no supporting evidence for our initial hypothesis that inline image reflects inline image (defined...

Data from: Z chromosome divergence, polymorphism, and relative effective population size in a genus of lekking birds

Sara J. Oyler-McCance, Robert S. Cornman, Kenneth L. Jones & Jennifer A. Fike
Sex chromosomes contribute disproportionately to species boundaries as they diverge faster than autosomes and often have reduced diversity. Their hemizygous nature contributes to faster divergence and reduced diversity, as do some types of selection. In birds, other factors (mating system and bottlenecks) can further decrease the effective population size of Z-linked loci and accelerate divergence (Fast-Z). We assessed Z-linked divergence and effective population sizes for two polygynous sage-grouse species and compared them to estimates from...

Data from: The Centennial Trends Greater Horn of Africa precipitation dataset

Chris C. Funk, Sharon E. Nicholson, Martin Landsfeld, Douglas Klotter, Pete Peterson & Laura Harrison
East Africa is a drought prone, food and water insecure region with a highly variable climate. This complexity makes rainfall estimation challenging, and this challenge is compounded by low rain gauge densities and inhomogeneous monitoring networks. The dearth of observations is particularly problematic over the past decade, since the number of records in globally accessible archives has fallen precipitously. This lack of data coincides with an increasing scientific and humanitarian need to place recent seasonal...

Data from: Marine foraging ecology influences mercury bioaccumulation in deep-diving northern elephant seals

Sarah H. Peterson, Joshua T. Ackerman & Daniel P. Costa
Mercury contamination of oceans is prevalent worldwide and methylmercury concentrations in the mesopelagic zone (200–1000 m) are increasing more rapidly than in surface waters. Yet mercury bioaccumulation in mesopelagic predators has been understudied. Northern elephant seals (Mirounga angustirostris) biannually travel thousands of kilometres to forage within coastal and open-ocean regions of the northeast Pacific Ocean. We coupled satellite telemetry, diving behaviour and stable isotopes (carbon and nitrogen) from 77 adult females, and showed that variability...

Data from: Age-related mortality explains life history strategies of tropical and temperate songbirds

Thomas E. Martin
Life history theory attempts to explain why species differ in offspring number and quality, growth rate, and parental effort. I show that unappreciated interactions of these traits in response to age-related mortality risk challenge traditional perspectives and explain life history evolution in songbirds. Counter to a long-standing paradigm, tropical songbirds grow at similar overall rates to temperate species but grow wings relatively faster. These growth tactics are favored by predation risk, both in and after...

Data from: Estimating the phenology of elk brucellosis transmission with hierarchical models of cause-specific and baseline hazards

Paul C. Cross, Eric J. Maichak, Jared D. Rogerson, Kathryn M. Irvine, Jennifer D. Jones, Dennis M. Heisey, William H. Edwards & Brandon M. Scurlock
Understanding the seasonal timing of disease transmission can lead to more effective control strategies, but the seasonality of transmission is often unknown for pathogens transmitted directly. We inserted vaginal implant transmitters (VITs) in 575 elk (Cervus elaphus canadensis) from 2006 to 2014 to assess when reproductive failures (i.e., abortions or still births) occur, which is the primary transmission route of Brucella abortus, the causative agent of brucellosis in the Greater Yellowstone Ecosystem. Using a survival...

Data from: Comparative demographics of a Hawaiian forest bird community

Alban Guillaumet, Bethany L. Woodworth, Richard J. Camp & Eben H. Paxton
Estimates of demographic parameters such as survival and reproductive success are critical for guiding management efforts focused on species of conservation concern. Unfortunately, reliable demographic parameters are difficult to obtain for any species, but especially for rare or endangered species. Here we derived estimates of adult survival and recruitment in a community of Hawaiian forest birds, including eight native species (of which three are endangered) and two introduced species at Hakalau Forest National Wildlife Refuge,...

Registration Year

  • 2015

Resource Types

  • Dataset


  • United States Geological Survey
  • University of Montana
  • University of California, Santa Barbara
  • Montana State University
  • University of Maryland Center For Environmental Sciences
  • University of Massachusetts Amherst
  • École Nationale Supérieure des Sciences Agronomiques de Bordeaux-Aquitaine
  • Temple University
  • Federal University of São Carlos
  • University of Georgia