156 Works

Additional file 14 of A comprehensive pan-cancer analysis of necroptosis molecules in four gynecologic cancers

Jianfeng Zheng, Xintong Cai, Yu Zhang, Huihui Wang, Li Liu, Fengling Tang, Linying Liu & Yang Sun
Additional file 14: Supplementary Table 2. The results of expression differences for pan-cancer analysis.

Additional file 1 of Vikrahraun—the 1961 basaltic lava flow eruption at Askja, Iceland: morphology, geochemistry, and planetary analogs

Aline Y. Blasizzo, Ingrid A. Ukstins, Stephen P. Scheidt, Alison H. Graettinger, David W. Peate, Tamara L. Carley, Adam J. Moritz & Jennifer E. Thines
Additional file 1: Contains sample locations, an analytical summary containing a table of contents for Additional files 1-3, topographic profile data, and flow volume calculations, crystallinity, vesicularity, density, whole-rock chemistry, mineral chemistry, and additional calculations

Masses of individual polychlorinated biphenyl congeners in particle phases in air in Chicago, Il, USA in 2009

Andres Martinez, Andrew M Awad & Keri C Hornbuckle
We report the levels of airborne individual PCB concentrations of particle phases from the City of Chicago in 2009. Seventeen locations were sampled for particle phases, where 46 particle phases were collected. One hundred and seventy-one individual or coeluting congener PCBs are reported. This dataset includes the sample mass for all 171 individual congeners for particle (QFF) phases, the deployment time and sampling flow.

Individual PCB congener masses measured in 24 laboratory blank polyurethane foams (PUFs)

Andres Martinez, Nicholas J Herkert, Jacob C Jahnke & Keri C Hornbuckle
Individual PCB congener mass per PUF from 24 laboratory blanks: PCBs were analyzed using GC-MS/MS.

Additional file 3 of Circulating tumor DNA integrating tissue clonality detects minimal residual disease in resectable non-small-cell lung cancer

Siwei Wang, Ming Li, Jingyuan Zhang, Peng Xing, Min Wu, Fancheng Meng, Feng Jiang, Jie Wang, Hua Bao, Jianfeng Huang, Binhui Ren, Mingfeng Yu, Ninglei Qiu, Houhuai Li, Fangliang Yuan, Zhi Zhang, Hui Jia, Xinxin Lu, Shuai Zhang, Xiaojun Wang, Youtao Xu, Wenjia Xia, Tongyan Liu, Weizhang Xu, Xinyu Xu … & Rong Yin
Additional file 3. Table S3: Performance of three strategies.

Blank masses for individual polychlorinated biphenyl congeners in soils from East Chicago, Indiana, USA in 2017/2018

Andres Martinez, Jason Hua, Ezazul Haque, Peter Thorne & Keri C Hornbuckle
Combusted diatomaceous earth (DE, Thermo Fisher Scientific) was used as method blank. A total of 8 method blanks (one blank per sample batch), were included during extraction, clean up and quantification of the samples. Gas chromatography (GC) in tandem with Mass Spectrometry GC-MS/MS (Agilent 7000) in multiple reaction monitoring (MRM) mode was used to quantify all 209 congeners in 171 individual or coeluting congener peaks. The GC was equipped with a Supelco SBP-Octyl capillary column...

Additional file 2 of Mucosal-associated invariant T cells predict increased acute graft-versus-host-disease incidence in patients receiving allogeneic hematopoietic stem cell transplantation

Zhao Wang, Sudong Zhang, Xiaoyu Zhang, Li Liu, Lukun Zhou, Yuyan Shen, Rongli Zhang, Yi He, Donglin Yang, Erlie Jiang, Xiaoming Feng, Jiaxi Zhou, Tao Cheng, Mingzhe Han & Sizhou Feng
Additional file 2: List of differentially expressed gene in RNA-seq.

Additional file 2 of Mucosal-associated invariant T cells predict increased acute graft-versus-host-disease incidence in patients receiving allogeneic hematopoietic stem cell transplantation

Zhao Wang, Sudong Zhang, Xiaoyu Zhang, Li Liu, Lukun Zhou, Yuyan Shen, Rongli Zhang, Yi He, Donglin Yang, Erlie Jiang, Xiaoming Feng, Jiaxi Zhou, Tao Cheng, Mingzhe Han & Sizhou Feng
Additional file 2: List of differentially expressed gene in RNA-seq.

Additional file 1 of MetaRNN: differentiating rare pathogenic and rare benign missense SNVs and InDels using deep learning

Chang Li, Degui Zhi, Kai Wang & Xiaoming Liu
Additional file 1: Includes 11 tables for training and testing data sets used in the study. The names of the tables are: Table S1. Training variants for MetaRNN; Table S2. Training variants for MetaRNN-indel; Table S3. Summary statistics for test datasets used to evaluate MetaRNN; Table S4. RNTS validation data set for MetaRNN model evaluation; Table S5. RCTS validation data set for MetaRNN model evaluation; Table S6. AF-RNTS validation data set for MetaRNN model evaluation;...

Additional file 1 of MetaRNN: differentiating rare pathogenic and rare benign missense SNVs and InDels using deep learning

Chang Li, Degui Zhi, Kai Wang & Xiaoming Liu
Additional file 1: Includes 11 tables for training and testing data sets used in the study. The names of the tables are: Table S1. Training variants for MetaRNN; Table S2. Training variants for MetaRNN-indel; Table S3. Summary statistics for test datasets used to evaluate MetaRNN; Table S4. RNTS validation data set for MetaRNN model evaluation; Table S5. RCTS validation data set for MetaRNN model evaluation; Table S6. AF-RNTS validation data set for MetaRNN model evaluation;...

sj-xlsx-2-cix-10.1177_11769351221136056 – Supplemental material for Optimizing Drug Response Study Design in Patient-Derived Tumor Xenografts

Jessica Weiss, Nhu-An Pham, Melania Pintilie, Ming Li, Geoffrey Liu, Frances A Shepherd, Ming-Sound Tsao & Wei Xu
Supplemental material, sj-xlsx-2-cix-10.1177_11769351221136056 for Optimizing Drug Response Study Design in Patient-Derived Tumor Xenografts by Jessica Weiss, Nhu-An Pham, Melania Pintilie, Ming Li, Geoffrey Liu, Frances A Shepherd, Ming-Sound Tsao and Wei Xu in Cancer Informatics

Data from: Niche differentiation and colonization of a novel environment by an asexual parasitic wasp.

Andrew A. Forbes, Laura A. Rice, Nicholas B. Stewart, Wee L. Yee & Maurine Neiman
How do asexual taxa become adapted to a diversity of environments, and how do they persist despite changing environmental conditions? These questions are linked by their mutual focus on the relationship between genetic variation, which is often limited in asexuals, and the ability to respond to environmental variation. Asexual taxa originating from a single ancestor present a unique opportunity to assess rates of phenotypic and genetic change when access to new genetic variation is limited...

Data from: Effects of polyploidy and reproductive mode on life history trait expression

Katelyn Larkin, Claire Tucci & Maurine Neiman
Ploidy elevation is increasingly recognized as a common and important source of genomic variation. Even so, the consequences and biological significance of polyploidy remain unclear, especially in animals. Here, our goal was to identify potential life history costs and benefits of polyploidy by conducting a large multiyear common garden experiment in Potamopyrgus antipodarum, a New Zealand freshwater snail that is a model system for the study of ploidy variation, sexual reproduction, host–parasite coevolution, and invasion...

Data from: Complete species phylogeny of the marine midge Pontomyia (Diptera: Chironomidae) reveals a cosmopolitan species and a new synonym

Danwei Huang, Peter S. Cranston & Lanna Cheng
Pontomyia (Diptera: Chironomidae) is an exclusively marine and flightless insect genus with four described species from the Indo-Pacific and one undescribed taxon known only by its larvae, pupal skins and females from the western Atlantic. A previous study of relationships among three of the Indo-Pacific species reported each of them to be monophyletic, with high genetic diversity within P. natans Edwards, the type species, and P. pacifica Tokunaga. The evolutionary affinities of the Australian endemic...

Data from: Genetic differentiation associated with host plants and geography among six widespread species of South American Blepharoneura fruit flies (Tephritidae)

Kristina Ottens, Isaac S. Winkler, Matthew L. Lewis, Sonja J. Scheffer, Gessica A. Gomes-Costa, Marty A. Condon & Andrew A. Forbes
Tropical herbivorous insects are astonishingly diverse and many are highly host-specific. Much evidence suggests that herbivorous insect diversity is a function of host-plant diversity; yet, the diversity of some lineages exceeds the diversity of plants. Although most species of herbivorous fruit flies in the Neotropical genus Blepharoneura are strongly host-specific (they deposit their eggs in a single host plant species and flower sex), some species are collected from multiple hosts or flowers and these may...

Data from: Anatomy of a cline: dissecting anti-predatory adaptations in a marine gastropod along the U.S. Atlantic coast

Mary E. Kosloski, Gregory P. Dietl & John C. Handley
The scope of anti-predatory adaptation is expected to be greater in warm than in cold environments. High temperatures lower the costs associated with the production and maintenance of energetically expensive traits and enable ecological interactions to intensify. We tested this hypothesis by characterizing the expression of anti-predatory morphology within a marine gastropod species (the knobbed whelk, Busycon carica) over a large (>1,400 km) geographic area that spans more than 10°C annual temperature variation. We also...

Data from: Developmental changes in hippocampal CA1 single neuron firing and theta activity during associative learning

Jangjin Kim, Mary E. Goldsberry, Thomas C. Harmon & John H. Freeman
Hippocampal development is thought to play a crucial role in the emergence of many forms of learning and memory, but ontogenetic changes in hippocampal activity during learning have not been examined thoroughly. We examined the ontogeny of hippocampal function by recording theta and single neuron activity from the dorsal hippocampal CA1 area while rat pups were trained in associative learning. Three different age groups [postnatal days (P)17-19, P21-23, and P24-26] were trained over six sessions...

Data from: Overprinting of taphonomic and paleoecological signals across the forest-prairie environmental gradient, mid-continent of North America

Lauren E. Milideo, Russell W. Graham, Carl R. Falk, Holmes A. Semken & Max L. Christie
Taphonomic factors may significantly alter faunal assemblages at varying scales. An exceptional record of late Holocene (< 4000 years old) mammal fanuas establishes a firm baseline to investigate the effects of scale on taphonomy. Our sample contains 73 sites within four contiguous states (North Dakota, South Dakota, Iowa, and Illinois, USA) that transect a strong modern and late Holocene environmental gradient, the prairie-forest ecotone. We performed Detrended Correspondence Analysis (DCA) and Non-metric Multidimensional Scaling (NMDS)...

Data from: The evolutionary history of dogs in the Americas

Máire Ní Leathlobhair, Angela R. Perri, Evan K. Irving-Pease, Kelsey E. Witt, Anna Linderholm, James Haile, Ophelie Lebrasseur, Carly Ameen, Jeffrey Blick, Adam R. Boyko, Selina Brace, Yahaira Nunes Cortes, Susan J. Crockford, Alison Devault, Evangelos A. Dimopoulos, Morley Eldridge, Jacob Enk, Shyam Gopalakrishnan, Kevin Gori, Vaughan Grimes, Eric Guiry, Anders J. Hansen, Ardern Hulme-Beaman, John Johnson, Andrew Kitchen … & Laurent A. F. Frantz
Dogs were present in the Americas prior to the arrival of European colonists, but the origin and fate of these pre-contact dogs are largely unknown. We sequenced 71 mitochondrial and seven nuclear genomes from ancient North American and Siberian dogs spanning ~9,000 years. Our analysis indicates that American dogs were not domesticated from North American wolves. Instead, American dogs form a monophyletic lineage that likely originated in Siberia and dispersed into the Americas alongside people....

Airborne polychlorinated biphenyl congeners masses from New Bedford, MA, 2015-2016 measured in the polyurethane foam passive air samplers

Andres Martinez, Andrew M Awad, Nicholas J Herkert, Wendy J Heiger-Bernays, Madeleine K Scammell & Keri C Hornbuckle
Individual PCB congener mass detected in polyurethane foam passive air sampler (i.e., PUF-PAS) using GC-MS/MS

Airborne polychlorinated biphenyl congener concentrations collected using polyurethane foam passive air samplers from New Bedford, MA, 2015-2016

Andres Martinez, Andrew M Awad, Nicholas J Herkert, Wendy J Heiger-Bernays, Madeleine K Scammell & Keri C Hornbuckle
Individual PCB congener in air using polyurethane foam passive air sampler (i.e., PUF-PAS)

Ectopic expression of BBS1 rescues male infertility, but not retinal degeneration, in a BBS1 mouse model

Matthew Cring
Bardet-Biedl syndrome (BBS) is a rare ciliopathy for which there are no current effective treatments. BBS is a genetically heterogeneous disease, though the M390R mutation in BBS1 is involved in approximately 25% of all genetic diagnoses of BBS. The principle features of BBS include retinal degeneration, obesity, male infertility, polydactyly, intellectual disability, and renal abnormalities. Patients with mutations in BBS genes often present with night blindness within the first decade of life, which progresses to...

Data from: Developmental 'awakening' of primary motor cortex to the sensory consequences of movement

James C Dooley & Mark S Blumberg
Before primary motor cortex (M1) develops its motor functions, it functions like a somatosensory area. Here, by recording from neurons in the forelimb representation of M1 in postnatal day (P) 8-12 rats, we demonstrate a rapid shift in its sensory responses. At P8-10, M1 neurons respond overwhelmingly to feedback from sleep-related twitches of the forelimb, but the same neurons do not respond to wake-related movements. By P12, M1 neurons suddenly respond to wake movements, a...

Data from: Gut microbiome critically impacts PCB-induced changes in metabolic fingerprints and the hepatic transcriptome in mice

Joe Lim, Julia Cui, Xueshu Li, Hans-Joachim Lehmler, Dongfang Wang & Haiwei Gu
Polychlorinated biphenyls (PCBs) are ubiquitously detected in the environment and have been linked to metabolic diseases. The liver serves as a central hub for the metabolism of xenobiotics and endogenous metabolites. Gut dysbiosis is recognized as a critical regulator of disease susceptibility, however, little is known regarding how PCBs and gut microbiome interact to modulate the interface between xenobiotic and intermediary metabolism. We hypothesized that the gut microbiome regulates PCBs-mediated changes in the metabolic fingerprints...

Statistical Study of Spatial Distribution and Polarization for Saturn Narrowband Emissions. Supplementary material: Event catalogue

Siyuan Wwwu, Shengyi Ye, Georg Fischer, Wang Jian, Minyi Long, J. Douglas Menietti, Baptiste Cecconi & William Kurth
This collection is contains the Saturn narrow band radio emission catalogue derived from Cassini RPWS data. The collection supplements: Wu et al. (2021), Statistical Study of Spatial Distribution and Polarization for Saturn Narrowband Emissions, submitted to ApJ.

Registration Year

  • 2022
    58
  • 2021
    19
  • 2020
    7
  • 2019
    9
  • 2018
    30
  • 2017
    6
  • 2016
    5
  • 2015
    7
  • 2014
    4
  • 2013
    4

Resource Types

  • Dataset
    156

Affiliations

  • University of Iowa
    156
  • Fudan University
    42
  • Chinese Academy of Medical Sciences & Peking Union Medical College
    38
  • Kunming Medical University
    38
  • Central South University
    36
  • Huazhong University of Science and Technology
    36
  • Capital Medical University
    36
  • Anhui Agricultural University
    34
  • Second Affiliated Hospital of Harbin Medical University
    34
  • Sun Yat-sen University
    30