12 Works

Data from: Mating system and environmental variation drive patterns of adaptation in Boechera spatifolia (Brassicaceae)

Kelsi A. Grogan, Timothy F. Sharbel, John K. McKay, John T. Lovell & Kelsi Grogan
Determining the relative contribution of population genetic processes to the distribution of natural variation is a major goal of evolutionary biology. Here, we take advantage of variation in mating system to test the hypothesis that local adaptation is constrained by asexual reproduction. We explored patterns of variation in ecological traits and genome-wide molecular markers in Boechera spatifolia (Brassicaceae), a species that contains both apomictic (asexual) and sexual individuals. Using a combination of quantitative genetics, neutral...

Data from: The roles of demography and genetics in the early stages of colonization

Marianna Szűcs, Brett A. Melbourne, Ty Tuff & Ruth A. Hufbauer
Colonization success increases with the size of the founding group. Both demographic and genetic factors underlie this relationship, yet because genetic diversity normally increases with numbers of individuals, their relative importance remains unclear. Furthermore, their influence may depend on the environment and may change as colonization progresses from establishment through population growth and then dispersal. We tested the roles of genetics, demography and environment in the founding of Tribolium castaneum populations. Using three genetic backgrounds...

Data from: Comparing entire colour patterns as birds see them

John A. Endler & Paul W. Mielke
Colour patterns and their visual backgrounds consist of a mosaic of patches that vary in colour, brightness, size, shape and position. Most studies of crypsis, aposematism, sexual selection, or other forms of signalling concentrate on one or two patch classes (colours), either ignoring the rest of the colour pattern, or analysing the patches separately. We summarize methods of comparing colour patterns making use of known properties of bird eyes. The methods are easily modifiable for...

Data from: A hybrid phylogenetic–phylogenomic approach for species tree estimation in African Agama lizards with applications to biogeography, character evolution, and diversification

Adam D. Leaché, Philipp Wagner, Charles W. Linkem, Wolfgang Böhme, Theodore J. Papenfuss, Rebecca A. Chong, Brian R. Lavin, Aaron M. Bauer, Stuart V. Nielsen, Eli Greenbaum, Mark-Oliver Rödel, Andreas Schmitz, Matthew LeBreton, Ivan Ineich, Laurent Chirio, Caleb Ofori-Boateng, Edem A. Eniang, Sherif Baha El Din, Alan R. Lemmon & Frank T. Burbrink
Africa is renowned for its biodiversity and endemicity, yet little is known about the factors shaping them across the continent. African Agama lizards (45 species) have a pan-continental distribution, making them an ideal model for investigating biogeography. Many species have evolved conspicuous sexually dimorphic traits, including extravagant breeding coloration in adult males, large adult male body sizes, and variability in social systems among colorful versus drab species. We present a comprehensive time-calibrated species tree for...

Data from: Fine scale genetic correlates to condition and migration in a wild Cervid

Joseph M. Northrup, Aaron B. A. Shafer, , David W. Coltman, George Wittemyer & Charles R. Anderson
The relationship between genetic variation and phenotypic traits is fundamental to the study and management of natural populations. Such relationships often are investigated by assessing correlations between phenotypic traits and heterozygosity or genetic differentiation. Using an extensive data set compiled from free-ranging mule deer (Odocoileus hemionus), we combined genetic and ecological data to (i) examine correlations between genetic differentiation and migration timing, (ii) screen for mitochondrial haplotypes associated with migration timing, and (iii) test whether...

Data from: Interactions among herbivory, climate, topography, and plant age shape riparian willow dynamics in northern Yellowstone National Park, USA

Kristin N. Marshall, David J. Cooper & N. Thompson Hobbs
Understanding how the environmental context modifies the strength of trophic interactions within food webs forms a central challenge in community ecology. Here, we demonstrate the necessity of considering the influence of climate, landscape heterogeneity and demographics for understanding trophic interactions in a well-studied food web in Yellowstone National Park, USA. We studied riparian willow (Salix spp.) establishment and stem growth reconstructed from tree rings on the northern range of Yellowstone over a 30-year period that...

Data from: The evolution of environmental tolerance and range size: a comparison of geographically restricted and widespread Mimulus

Seema Nayan Sheth & Amy L. Angert
The geographic ranges of closely related species can vary dramatically, yet we do not fully grasp the mechanisms underlying such variation. The niche breadth hypothesis posits that species that have evolved broad environmental tolerances can achieve larger geographic ranges than species with narrow environmental tolerances. In turn, plasticity and genetic variation in ecologically important traits and adaptation to environmentally variable areas can facilitate the evolution of broad environmental tolerance. We used five pairs of western...

Data from: Cell wall composition and bioenergy potential of rice straw tissues are influenced by environment, tissue type, and genotype

Paul Tanger, Miguel E. Vega-Sánchez, Margaret Fleming, Kim Tran, Seema Singh, James B. Abrahamson, Courtney E. Jahn, Nicholas Santoro, Elizabeth B. Naredo, Marietta Baraoidan, John M. C. Danku, David E. Salt, Kenneth L. McNally, Blake A. Simmons, Pamela C. Ronald, Hei Leung, Daniel R. Bush, John K. McKay & Jan E. Leach
Breeding has transformed wild plant species into modern crops, increasing the allocation of their photosynthetic assimilate into grain, fiber, and other products for human use. Despite progress in increasing the harvest index, much of the biomass of crop plants is not utilized. Potential uses for the large amounts of agricultural residues that accumulate are animal fodder or bioenergy, though these may not be economically viable without additional efforts such as targeted breeding or improved processing....

Data from: Correlation between sequence divergence and polymorphism reveals similar evolutionary mechanisms acting across multiple timescales in a rapidly evolving plastid genome

Karen B. Barnard-Kubow, Daniel B. Sloan & Laura F. Galloway
Background: Although the plastid genome is highly conserved across most angiosperms, multiple lineages have increased rates of structural rearrangement and nucleotide substitution. These lineages exhibit an excess of nonsynonymous substitutions (i.e., elevated dN/dS ratios) in similar subsets of plastid genes, suggesting that similar mechanisms may be leading to relaxed and/or positive selection on these genes. However, little is known regarding whether these mechanisms continue to shape sequence diversity at the intraspecific level. Results: We examined...

Data from: Bias in tree searches and its consequences for measuring group supports

Pablo A. Goloboff & Mark P. Simmons
When doing a bootstrap analysis with a single tree saved per pseudoreplicate, biased search algorithms may influence support values more than actual properties of the data set. Two methods commonly used for finding phylogenetic trees consist of randomizing the input order of species in multiple addition sequences followed by branch swapping, or using random trees as the starting point for branch swapping. The randomness inherent to such methods is assumed to eliminate any consistent preferences...

Data from: Gene amplification of 5-enol-pyruvylshikimate-3-phosphate synthase in glyphosate-resistant Kochia scoparia

Andrew T. Wiersma, Todd A. Gaines, Christopher Preston, John P. Hamilton, Darci Giacomini, C. Robin Buell, Jan E. Leach & Philip Westra
The widely used herbicide glyphosate inhibits the shikimate pathway enzyme 5-enolpyruvylshikimate-3-phosphate synthase (EPSPS). Globally, the intensive use of glyphosate for weed control has selected for glyphosate resistance in 31 weed species. Populations of suspected glyphosate-resistant Kochia scoparia were collected from fields located in the US central Great Plains. Glyphosate dose response verified glyphosate resistance in nine populations. The mechanism of resistance to glyphosate was investigated using targeted sequencing, quantitative PCR, immunoblotting, and whole transcriptome de...

Data from: Partitioning the sources of demographic variation reveals density-dependent nest predation in an island bird population

Helen R. Sofaer, T Sillett, Kathryn M. Langin, Scott A. Morrison, Cameron K. Ghalambor & T. Scott Sillett
Ecological factors often shape demography through multiple mechanisms, making it difficult to identify the sources of demographic variation. In particular, conspecific density can influence both the strength of competition and the predation rate, but density-dependent competition has received more attention, particularly among terrestrial vertebrates and in island populations. A better understanding of how both competition and predation contribute to density-dependent variation in fecundity can be gained by partitioning the effects of density on offspring number...

Registration Year

  • 2014
    12

Resource Types

  • Dataset
    12

Affiliations

  • Colorado State University
    12
  • University of Adelaide
    1
  • University of Washington
    1
  • University of California System
    1
  • University of Uyo
    1
  • University of Virginia
    1
  • University of Alberta
    1
  • Sandia National Laboratories
    1
  • Great Lakes Bioenergy Research Center
    1
  • Villanova University
    1