3 Works

Data from: Clustering Deviation Index (CDI): A robust and accurate internal measure for evaluating scRNA-seq data clustering

Jiyuan Fang, Cliburn Chan, Kouros Owzar, Liuyang Wang, Diyuan Qin, Qi-Jing Li & Jichun Xie
The clustering of cells has been widely used to explore the heterogeneity of cell populations in single-cell RNA-sequencing (scRNA-seq). We proposed a parametric model for monoclonal and polyclonal scRNA-seq data to evaluate clustering results. Based on the parametric model, we proposed a metric (CDI) to quantify the goodness-of-fit of cell clustering to the data. Here we presented CT26.WT and T-CELL as two datasets to examine the performance of our model and metric. CT26.WT contains wild-type...

Additional file 2 of A haplotype-resolved genome assembly of the Nile rat facilitates exploration of the genetic basis of diabetes

Huishi Toh, Chentao Yang, Giulio Formenti, Kalpana Raja, Lily Yan, Alan Tracey, William Chow, Kerstin Howe, Lucie A. Bergeron, Guojie Zhang, Bettina Haase, Jacquelyn Mountcastle, Olivier Fedrigo, John Fogg, Bogdan Kirilenko, Chetan Munegowda, Michael Hiller, Aashish Jain, Daisuke Kihara, Arang Rhie, Adam M. Phillippy, Scott A. Swanson, Peng Jiang, Dennis O. Clegg, Erich D. Jarvis … & Yury V. Bukhman
Additional file 2: Supplementary Table 1. TOGA status of 18430 ancestral placental mammal genes in muroid rodent genome assemblies. Supplementary Table 2. Positively selected genes and their mutation tolerance in humans according to gnomAD.

Additional file 2 of A haplotype-resolved genome assembly of the Nile rat facilitates exploration of the genetic basis of diabetes

Huishi Toh, Chentao Yang, Giulio Formenti, Kalpana Raja, Lily Yan, Alan Tracey, William Chow, Kerstin Howe, Lucie A. Bergeron, Guojie Zhang, Bettina Haase, Jacquelyn Mountcastle, Olivier Fedrigo, John Fogg, Bogdan Kirilenko, Chetan Munegowda, Michael Hiller, Aashish Jain, Daisuke Kihara, Arang Rhie, Adam M. Phillippy, Scott A. Swanson, Peng Jiang, Dennis O. Clegg, Erich D. Jarvis … & Yury V. Bukhman
Additional file 2: Supplementary Table 1. TOGA status of 18430 ancestral placental mammal genes in muroid rodent genome assemblies. Supplementary Table 2. Positively selected genes and their mutation tolerance in humans according to gnomAD.

Registration Year

  • 2022
    3

Resource Types

  • Dataset
    3

Affiliations

  • Duke Medical Center
    3
  • Cleveland State University
    2
  • Howard Hughes Medical Institute
    2
  • National Human Genome Research Institute
    2
  • Senckenberg Society for Nature Research
    2
  • Chongqing Medical University
    2
  • University of Wisconsin–Madison
    2
  • Purdue University West Lafayette
    2
  • University of California, Santa Barbara
    2
  • Chinese Academy of Sciences
    2