17 Works

Rigg Foot topographical survey data, Sourhope field experiment site, Scotland [NERC Soil Biodiversity Programme]

M. Whelan & S. Bradley
This resource is the raw data from a topographic survey of the Sourhope field experiment site, conducted by the Department of Environmental Science, University of Stirling in April and May 2000. The data are available to match to other data sets from the field site, or to analyse in more detail. The data were collected as part of the NERC Soil Biodiversity Thematic Programme, centred upon the intensive study of a large field experiment located...

Data from: From animal tracks to fine-scale movement modes: a straightforward approach for identifying multiple, spatial movement patterns

Kevin Morelle, Nils Bunnefeld, Philippe Lejeune & Steve A. Oswald
1. Thanks to developments in animal tracking technology, detailed data on the movement tracks of individual animals are now attainable for many species. However, straightforward methods to decompose individual tracks into high-resolution, spatial modes are lacking but are essential to understand what an animal is doing. 2. We developed an analytical approach that combines separately-validated methods into a straightforward tool for converting animal GPS tracks to short-range movement modes. Our three-step analytical process comprises: (1)...

Soil profile descriptions, biomass data and vegetation species from a joint sampling event at Sourhope, Scotland, 2000 [NERC Soil Biodiversity Programme]

S. Buckland, C. Cornish, N. Ray, P. Bruneau, L. Dawson & J. Ross
This dataset includes: biomass data for roots, shoots and litter in soil core samples, vegetation species abundance data for sampled soil blocks, and soil profile descriptions (horizon types & depths) with corresponding pH and moisture content values by horizon for soil blocks. All data were collected during a joint sampling event, held at Sourhope, Scotland, where co-ordinated sampling took place on the 27-28th July 2000 involving groups from within the NERC Soil Biodiversity Programme. A...

Data from: Environmental variation causes different (co) evolutionary routes to the same adaptive destination across parasite populations

Stuart K.J.R. Auld, June Brand & Stuart K. J. R. Auld
Epidemics are engines for host-parasite coevolution, where parasite adaptation to hosts drives reciprocal adaptation in host populations. A key challenge is to understand whether parasite adaptation and any underlying evolution and coevolution is repeatable across ecologically realistic populations that experience different environmental conditions, or if each population follows a completely unique evolutionary path. We established twenty replicate pond populations comprising an identical suite of genotypes of crustacean host, Daphnia magna, and inoculum of their parasite,...

Data from: Evolution of pre-copulatory and post-copulatory strategies of inbreeding avoidance and associated polyandry

A. Bradley Duthie, Greta Bocedi, Ryan R. Germain & Jane M. Reid
Inbreeding depression is widely hypothesised to drive adaptive evolution of pre-copulatory and post-copulatory mechanisms of inbreeding avoidance, which in turn are hypothesised to affect evolution of polyandry (i.e., female multiple mating). However, surprisingly little theory or modelling critically examines selection for pre-copulatory or post-copulatory inbreeding avoidance, or both strategies, given evolutionary constraints and direct costs, or examines how evolution of inbreeding avoidance strategies might feed back to affect evolution of polyandry. Selection for post-copulatory inbreeding...

Data from: Dietary changes in predators and scavengers in a nocturnally illuminated riparian ecosystem

Alessandro Manfrin, David Lehmann, Roy H.A. Van Grunsven, Stefano Larsen, Jari Syväranta, Geraldene Wharton, Christian C. Voigt, Michael T. Monaghan, Franz Hölker & Roy H. A. Van Grunsven
Aquatic and terrestrial ecosystems are linked by fluxes of carbon and nutrients in riparian areas. Processes that alter these fluxes may therefore change the diet and composition of consumer communities. We used stable carbon isotope (δ13C) analyses to test whether the increased abundance of aquatic prey observed in another study led to a dietary shift in riparian consumers in areas illuminated by artificial light at night (ALAN). We measured the contribution of aquatic-derived carbon to...

Data from: Genetic variation and clonal diversity in introduced populations of Mimulus guttatus assessed by genotyping at 62 single nucleotide polymorphism loci

Pauline O. Pantoja, Violeta I. Simon-Porcar, Joshua R. Puzey & Mario Vallejo-Marin
Background: Single nucleotide polymorphisms (SNPs) are increasingly being used to study non-native populations. SNPs are relatively information poor on a per locus basis, but allow genotyping more loci than others markers (e.g., microsatellites) and have the advantage of consistent allele calls between studies. Aims: We investigated the utility of a newly developed set of SNP markers, suitable for high throughput genotyping to characterise genotypic variation and population structure in non-native populations of the facultative clonal...

Data from: The changing environment of conservation conflict: geese and farming in Scotland

Tom H. E. Mason, Aidan Keane, Stephen M. Redpath & Nils Bunnefeld
1.Conflict between conservation objectives and human livelihoods is ubiquitous and can be highly damaging, but the processes generating it are poorly understood. Ecological elements are central to conservation conflict, and changes in their dynamics – for instance due to anthropogenic environmental change – are likely to influence the emergence of serious human-wildlife impacts and, consequently, social conflict. 2.We used mixed-effects models to examine the drivers of historic spatio-temporal dynamics in numbers of Greenland barnacle geese...

Data from: An integrated framework to identify wildlife populations under threat from climate change

Orly Razgour, John B. Taggart, Stéphanie Manel, Javier Juste, Carlos Ibáñez, Hugo Rebelo, Antton Alberdi, Gareth Jones & Kirsty Park
Climate change is a major threat to global biodiversity that will produce a range of new selection pressures. Understanding species responses to climate change requires an interdisciplinary perspective, combining ecological, molecular and environmental approaches. We propose an applied integrated framework to identify populations under threat from climate change based on their extent of exposure, inherent sensitivity due to adaptive and neutral genetic variation and range shift potential. We consider intraspecific vulnerability and population-level responses, an...

Data from: Sex differences in adult mortality rate mediated by early-life environmental conditions

Robert M. Griffin, Adam D. Hayward, Elisabeth Bolund, Alexei A. Maklakov & Virpi Lummaa
Variation in sex differences is affected by both genetic and environmental variation, with rapid change in sex differences being more likely due to environmental change. One case of rapid change in sex differences is human lifespan, which has become increasingly female-biased in recent centuries. Long-term consequences of variation in the early-life environment may, in part, explain such variation in sex differences, but whether the early-life environment mediates sex differences in life-history traits is poorly understood...

Data from: Evolution and conservation of Characidium sex chromosomes

Ricardo Utsunomia, Priscilla C. Scacchetti, Miguel Hermida, Raquel Fernández-Cebrián, Xoana Taboada, Carlos Fernandez, Michaël Bekaert, Natalia J. Mendes, Diego Robledo, Judith E. Mank, John B. Taggart, Claudio Oliveira, Fausto Foresti & Paulino Martínez
Fish species exhibit substantial variation in the degree of genetic differentiation between sex chromosome pairs, and therefore offer the opportunity to study the full range of sex chromosome evolution. We used restriction-site associated DNA sequencing (RAD-seq) to study the sex chromosomes of Characidium gomesi, a species with conspicuous heteromorphic ZW/ZZ sex chromosomes. We screened 9863 single-nucleotide polymorphisms (SNPs), corresponding to ~1 marker/100 kb distributed across the genome for sex-linked variation. With this data set, we...

Data from: Life-stage associated remodeling of lipid metabolism regulation in Atlantic salmon

Gareth Gillard, Thomas N. Harvey, Arne Gjuvsland, Yang Jin, Magny Thomassen, Sigbjorn Lien, Michael Leaver, Jacob S. Torgersen, Torgeir R. Hvidsten, Jon Olav Vik, Simen Sandve & Simen R. Sandve
Atlantic salmon migrates from rivers to sea to feed, grow and develop gonads before returning to spawn in freshwater. The transition to marine habitats is associated with dramatic changes in the environment, including water salinity, exposure to pathogens, and shift in dietary lipid availability. Many anticipatory changes in physiology occur before migration to sea, but little is known about the molecular nature of these changes. Here we use a long term feeding experiment to study...

Data from: Tree mortality across biomes is promoted by drought intensity, lower wood density and higher specific leaf area

Sarah Greenwood, Paloma Ruiz-Benito, Jordi Martínez-Vilalta, Francisco Lloret, Thomas Kitzberger, Craig D. Allen, Rod Fensham, Daniel C. Laughlin, Jens Kattge, Gerhard Bonisch, Nathan J. B. Kraft & Alistair S. Jump
Drought events are increasing globally, and reports of consequent forest mortality are widespread. However, due to a lack of a quantitative global synthesis, it is still not clear whether drought-induced mortality rates differ among global biomes and whether functional traits influence the risk of drought-induced mortality. To address these uncertainties, we performed a global meta-analysis of 58 studies of drought-induced forest mortality. Mortality rates were modelled as a function of drought, temperature, biomes, phylogenetic and...

Data from: Global biogeography of mating system variation in seed plants

David A. Moeller, Ryan D. Briscoe Runquist, Annika M. Moe, Monica A. Geber, Carol Goodwillie, Pierre-Olivier Cheptou, Christopher G. Eckert, Elizabeth Elle, Mark O. Johnston, Susan Kalisz, Richard H. Ree, Risa D. Sargent, Mario Vallejo-Marin & Alice A. Winn
Latitudinal gradients in biotic interactions have been suggested as causes of global patterns of biodiversity and phenotypic variation. Plant biologists have long speculated that outcrossing mating systems are more common at low than high latitudes owing to a greater predictability of plant–pollinator interactions in the tropics; however, these ideas have not previously been tested. Here, we present the first global biogeographic analysis of plant mating systems based on 624 published studies from 492 taxa. We...

Data from: Strongly asymmetric hybridization barriers shape the origin of a new polyploid species and its hybrid ancestor

Mario Vallejo-Marin, Arielle M. Cooley, Michelle Yuequi Lee, Madison Folmer, Michael R. McKain & Joshua Robert Puzey
PREMISE OF THE STUDY: Hybridization between diploids and tetraploids can lead to new allopolyploid species, often via a triploid intermediate. Viable triploids are often produced asymmetrically, with greater success observed for “maternal-excess” crosses where the mother has a higher ploidy than the father. Here we investigated the evolutionary origins of Mimulus peregrinus, an allohexaploid recently derived from the triploid M. ×robertsii, to determine whether reproductive asymmetry has shaped the formation of this new species. METHODS:...

Data from: Evidence for selection-by-environment but not genotype-by-environment interactions for fitness-related traits in a wild mammal population

Adam Hayward, Josephine Pemberton, Camillo Berenos, Alastair J. Wilson, Jill G. Pilkington, Loeske E.B. Kruuk, Josephine M. Pemberton & Adam D. Hayward
How do environmental conditions influence selection and genetic variation in wild populations? There is widespread evidence for selection-by-environment interactions (S*E), but we reviewed studies of natural populations estimating the extent of genotype-by-environment interactions (G*E) in response to natural variation in environmental conditions, and found that evidence for G*E appears to be rare within single populations in the wild. Studies estimating the simultaneous impact of environmental variation on both selection and genetic variation are especially scarce....

Data from: Subgenome dominance in an interspecific hybrid, synthetic allopolyploid, and a 140-year-old naturally established neo-allopolyploid monkeyflower

Patrick P. Edger, Ronald D. Smith, Michael R. McKain, Arielle M. Cooley, Mario Vallejo-Marin, Yao-Wu Yuan, Adam J. Bewick, Lexiang Ji, Adrian E. Platts, Megan J. Bowman, Kevin Childs, Jacob D. Washburn, Robert Schmitz, Gregory D. Smith, J. Chris Pires & Joshua R. Puzey
Recent studies have shown that one of the parental subgenomes in ancient polyploids is generally more dominant - having both retained more genes and being more highly expressed - a phenomenon termed subgenome dominance. The genomic features that determine how quickly and which subgenome dominates within a newly formed polyploid remain poorly understood. To investigate the rate of subgenome dominance emergence, we examined gene expression, gene methylation, and transposable element (TE) methylation in a natural,...

Registration Year

  • 2017

Resource Types

  • Dataset


  • University of Stirling
  • Donald Danforth Plant Science Center
  • UK Centre for Ecology & Hydrology
  • University of Aberdeen
  • German Center for Integrative Biodiversity Research
  • University of Edinburgh
  • College of William & Mary
  • Whitman College
  • Centre d'Ecologie Fonctionnelle et Evolutive
  • Sao Paulo State University