Data for: A molecular phylogenetic analysis of the genera of fruit doves and their allies using dense taxonomic samplingJennifer E. Nowak, Andrew D. Sweet, Jason D. Weckstein & Kevin P. Johnson
Multiple sequence alignments from concatenated nuclear and mitochondrial genes and resulting phylogenetic tree files of fruit doves and their close relatives. Files include: BEAST input XML file (fruit_dove_beast_input.xml); a maximum clade credibility tree from a BEAST analysis (fruit_dove_beast_mcc.tre); concatenated multiple sequence alignment NEXUS files for the novel dataset (fruit_dove_concatenated_alignment.nex, 76 taxa, 4,277 characters) and the dataset with additional sequences (fruit_dove_plus_cibois_data_concatenated_alignment.nex, 204 taxa, 4,277 characters), both of which contain a MrBayes block including partition information; and...
This dataset accompanies the paper "STREETS: A Novel Camera Network Dataset for Traffic Flow" at Neural Information Processing Systems (NeurIPS) 2019. Included are: *Over four million still images form publicly accessible cameras in Lake County, IL. The images were collected across 2.5 months in 2018 and 2019. *Directed graphs describing the camera network structure in two communities in Lake County. *Documented non-recurring traffic incidents in Lake County coinciding with the 2018 data. *Traffic counts for...
This is the 5 states 5000 cells synthetic expression file we used for validation of SimiC, a single cell gene regulatory network inference method with similarity constraints. Ground truth GRNs are stored in Numpy array format, and expression profiles of all states combined are stored in Pandas DataFrame in format of Pickle files.
The data are original electron micrographs from the lab of the late Dr. Burt Endo of the USDA. These data were digitized from photographic prints and glass plate negatives at 600 DPI as 16 bit TIFF files. This third version added 12 new ZIP files from the Endo data collection. "Endo folder database.xlsx" is updated to reflect the addition. Information in "ReadmeFile name formatting.docx" remains the same as in V2.
ICoastalDB, which was developed using Microsoft structured query language (SQL) Server, consists of water quality and related data in the Illinois coastal zone that were collected by various organizations. The information in the dataset includes, but is not limited to, sample data type, method of data sampling, location, time and date of sampling and data units.
List of differentially expressed genes for \"Basigin is necessary for normal decidualization of human uterine stromal cells\"Romana Nowak, Shuhong Yang, Kailiang Li, Jiajia Bi & Jenny Drnevich
List of differentially expressed genes in human endometrial stromal cells with knockdown of Basigin (BSG) gene expression during decidualization. The BSG siRNA or negative scrambled control siRNA were transfected into human endometrial stromal cells (HESCs) following the protocol of siLentFect™ Lipid (Bio-Rad, Hercules, CA. Following complete knock down of BSG in HESCs (72 hours after adding siRNA), HESCs were treated with medium containing estrogen, progesterone and cAMP to induce decidualization. BSG siRNA and negative control...
Data for Quantifying transportation energy vulnerability and its spatial patterns in the United StatesShanshan Liu & Eleftheria Kontou
This data set contains all the map data used for "Quantifying transportation energy vulnerability and its spatial patterns in the United States". The multiple dimensions (i.e., exposure, sensitivity, adaptive capacity) of transportation energy vulnerability (TEV) at the census tract level in the United States, the changes in TEV with electric vehicles adoption, and the detailed data for Chicago, Los Angeles, and New York are in the dataset.
Provides links to Author-ity 2009, including records from principal investigators (on NIH and NSF grants), inventors on USPTO patents, and students/advisors on ProQuest dissertations. Note that NIH and NSF differ in the type of fields they record and standards used (e.g., institution names). Typically an NSF grant spanning multiple years is associated with one record, while an NIH grant occurs in multiple records, for each fiscal year, sub-projects/supplements, possibly with different principal investigators. The prior...
A feasibility study to test a novel approach to dietary weight loss with a focus on assisting informed decision making in food selectionMindy Lee, Catherine Applegate, Annabelle Shaffer, Abrar Emamaddin, John Erdman & Manabu Nakamura
This small dataset is a raw data of anthropometric and dietary intake data.
Author-ity 2009 baseline dataset. Prepared by Vetle Torvik 2009-12-03 The dataset comes in the form of 18 compressed (.gz) linux text files named authority2009.part00.gz - authority2009.part17.gz. The total size should be ~17.4GB uncompressed. • How was the dataset created? The dataset is based on a snapshot of PubMed (which includes Medline and PubMed-not-Medline records) taken in July 2009. A total of 19,011,985 Article records and 61,658,514 author name instances. Each instance of an author name...
We measured the effects of fire or drought treatment on plant, microbial and biogeochemical responses in temperate deciduous forests invaded by the annual grass Microstegium vimineum with a history of either frequent fire or fire exclusion. Please note, on Documentation tab / Experimental or Sampling Design, “15 (XVI)” should be “16 (XVI)”.
Dataset for \"The necessity of lateral channel migration in the evolution of non-dendritic drainage networks to full dendricity and the persistence of dynamic networks\"Jeffrey S. Kwang, Abigail L. Langston & Gary Parker
*This is the third version of the dataset*. New changes in this 3rd version: 1.replaces simulations where the initial condition consists of a sinusoidal channel with topographic perturbations with simulations where the initial condition consists of a sinusoidal channel without topographic perturbations. These simulations better illustrate the transformation of a nondendritic network into a dendritic one. 2. contains two additional simulations showing how total domain size affects the landscape's dynamism. 3. changes dataset title to...
Reproduction and hybridization in Celastrus scandens and C. orbiculatus at the Indiana Dunes National ParkDavid N. Zaya, Stacey A. Leicht-Young, Noel B. Pavlovic & Mary V. Ashley
These data are from an observational study and small experiment investigating reproductive biology and hybridization between two plants, Celastrus scandens L. and Celastrus orbiculatus Thunb. (Celastraceae). These data were collected during the 2008 growing season from the Indiana Dunes National Park (formerly Indiana Dunes National Lakeshore), just east of the municipality of Ogden Dunes, Indiana, USA. The five data files provide information on floral output of the two species, fertilization rate, fruit set rate, hybridization...
Multi-model urban climate projections data from: Global multi-model projections of local urban climatesLei Zhao, Keith Oleson, Elie Bou-Zeid, Eric Scott Krayenhoff, Andrew Bray, Qing Zhu, Zhonghua Zheng, Chen Chen & Michael Oppenheimer
This dataset contains the emulated global multi-model urban climate projections under RCP 8.5 and RCP 4.5 used in the article "Global multi-model projections of local urban climates" (https://www.nature.com/articles/s41558-020-00958-8). Details about this dataset and the local urban climate emulator are described in the article. This dataset documents the monthly mean projections of urban temperatures and urban relative humidity of 26 CMIP5 Earth system models (ESMs) from 2006 to 2100 across the globe. This dataset may be...
Data inputs, and scripts for the analysis detailed in Bradshaw et al, published in PlosONE 2020.
Simulated Land Allocation, Nitrogen Use, and Nitrogen Loss in the Mississippi Atchafalaya River Basin for Various RFS2 (Renewable Fuel Standard) Policy ScenariosKelsie Ferin, Luoye Chen, Jia Zhong, Emily Heaton, Madhu Khanna & Andy VanLoocke
Total nitrogen leaching rates were calculated over the Mississippi Atchafalaya River Basin (MARB) using an integrated economic-biophysical modeling approach. Land allocation for corn production and total nitrogen application rates were calculated for crop reporting districts using the Biofuel and Environmental Policy Analysis Model (BEPAM) for 5 RFS2 policy scenarios. These were used as input in the Integrated BIosphere Simulator-Agricultural Version (Agro-IBIS) and the Terrestrial Hydrologic Model with Biogeochemistry (THMB) to calculate the nitrogen loss. Land...
The file contains biomass and count data of food items encountered in the digestive tract of collected green-winged teal from the Illinois River Valley during spring 2016-2018. The file also contains biomass of food items collected from core samples collected at sites where the green-winged teal were collected. Together, the consumed and availability food data are used to calculate diet selection. The data also contains information on the teal, collection, sites, and other covariates used...
This dataset contains RNASim1000, Cox1-Het datasets as well as analyses of RNASim1000, Cox1-Het, and 1000M1(HF).
A dataset of acoustic impulse responses for microphones worn on the body. Microphones were placed at 80 positions on the body of a human subject and a plastic mannequin. The impulse responses can be used to study the acoustic effects of the body and can be convolved with sound sources to simulate wearable audio devices and microphone arrays. The dataset also includes measurements with different articles of clothing covering some of the microphones and with...
Dataset of 3D fluid phase distribution from drainage simulations (in micromodel and real rock geometry) examining inertial effectsYu Chen, Qinjun Kang, Albert Valocchi & Hari Viswanathan
The dataset contains fluid phase distribution obtained from high-resolution drainage simulations in both a heterogenous micromodel and Bentheimer sandstone. The purpose is to investigate the influence of inertial effects on scCO2-brine displacement in complex geometries, where scCO2 is much less viscous than brine or oil meaning that the inertial effects may not be negligible. The direct numerical simulations in this work employ the continuum-surface-force based color-gradient multiple-relaxation-time lattice Boltzmann model combined with a geometrical wetting...
Machine learning enabled phenotyping for GWAS and TWAS of WUE traits in 869 field-grown sorghum accessionsJohn Ferguson, Samuel Fernandes, Brandon Monier, Nathan Miller, Dylan Allen, Anna Dmitrieva, Peter Schmuker, Roberto Lozano, Ravi Valluru, Edward Buckler, Michael Gore, Patrick Brown, Edgar Spalding & Andrew Leakey
This dataset contains the images of a photoperiod sensitive sorghum accession population used for a GWAS/TWAS study of leaf traits related to water use efficiency in 2016 and 2017. Raw images were produced by Optical topometry (nms files).
Photosynethic Performance Measurements in Biomass Sorghum Varietals in Central Illinois during Four Growing Seasons.Nikhil S. Jaikumar, Samuel B. Fernandes, Andrew D.B. Leakey, Patrick J. Brown, Samantha S. Stutz, Carl Bernacchi & Stephen P. Long
In a set of field studies across four years, the effect of self-shading on photosynthetic performance in lower canopy sorghum leaves was studied at sites in Champaign County, IL. Photosynthetic parameters in upper and lower canopy leaves, carbon assimilation, electron transport, stomatal conductance, and activity of three C4-specific photosynthetic enzymes, were compared within a genetically diverse range of accessions varying widely in canopy architecture and thereby in the degree of self-shading. Accessions with erect leaves...
Dataset for Fifty Ways to Tag your Pubtypes: Multi-Tagger, a Set of Probabilistic Publication Type and Study Design Taggers to Support Biomedical Indexing and Evidence-Based MedicineYuanxi Fu & Jodi Schneider
This dataset contains data from extreme-disagreement analysis described in paper “Aaron M. Cohen, Jodi Schneider, Yuanxi Fu, Marian S. McDonagh, Prerna Das, Arthur W. Holt, Neil R. Smalheiser, 2021, Fifty Ways to Tag your Pubtypes: Multi-Tagger, a Set of Probabilistic Publication Type and Study Design Taggers to Support Biomedical Indexing and Evidence-Based Medicine.” In this analysis, our team experts carried out an independent formal review and consensus process for extreme disagreements between MEDLINE indexing and...
Why the Stall? Using Metabolomics to Define the Lack of Upstream Movement of Invasive Bigheaded Carp in the Illinois RiverCory Suski & Jocelyn Curtis-Quick
Bigheaded Carp have spread throughout the Mississippi River basin since the 1970s. Little has stopped the spread as carp have the ability to pass through locks and dams, and they are currently approaching the Great Lakes. However, the location of the leading edge in the Illinois River has stalled for over a decade, even though there is no barrier preventing further advancement towards the Great Lakes. Defining why carp are not moving towards the Great...
University of Illinois357
University of Illinois at Urbana Champaign216
University of Illinois Urbana-Champaign21
University of Minnesota11
University of Illinois System11
University of Illinois at Urbana-Champaign8
University of Florida7
University of Utah6
Iowa State University6
University of Michigan-Ann Arbor5