602 Works

A Vector-Based Method for Drainage Network Analysis Based on LiDAR Data

Fangzheng Lyu, Zewei Xu, Xinlin Ma, Shaohua Wang, Zhiyu Li & Shaowen Wang
Drainage network analysis is fundamental to understanding the characteristics of surface hydrology. Based on elevation data, drainage network analysis is often used to extract key hydrological features like drainage networks and streamlines. Limited by raster-based data models, conventional drainage network algorithms typically allow water to flow in 4 or 8 directions (surrounding grids) from a raster grid. To resolve this limitation, this paper describes a new vector-based method for drainage network analysis that allows water...

Dataset for \"Continued use of retracted papers: Temporal trends in citations and (lack of) awareness of retractions shown in citation contexts in biomedicine\"

Tzu-Kun Hsiao & Jodi Schneider
This dataset includes five files. Descriptions of the files are given as follows: FILENAME: PubMed_retracted_publication_full_v3.tsv - Bibliographic data of retracted papers indexed in PubMed (retrieved on August 20, 2020, searched with the query "retracted publication" [PT] ). - Except for the information in the "cited_by" column, all the data is from PubMed. - PMIDs in the "cited_by" column that meet either of the two conditions below have been excluded from analyses: [1] PMIDs of the...

Data for: Evaluating the impacts of cloud processing on resuspended aerosol particles after cloud evaporation using a particle-resolved model

Nicole Riemer, Yu Yao, Matthew Dawson & Donald Dabdub
This dataset contains simulation results from PartMC-MOSAIC-CAPRAM used in the article ”Eval- uating the impacts of cloud processing on resuspended aerosol particles after cloud evaporation using a particle-resolved model”. In this V2, there are eight folders: one for urban plume simulation to provide the initial particle population for cloud processing, the other four folders are for the four cloud cycles simulated and the last two are for the coagulation cases. Within the urban plume simulation,...

Mesospheric gravity wave activity estimated via airglow imagery, multistatic meteor radar, and SABER data taken during the SIMONe–2018 campaign

Fabio Vargas
Airglow images and Meteor radar data used in the paper "Mesospheric gravity wave activity estimated via airglow imagery, multistatic meteor radar, and SABER data taken during the SIMONe–2018 campaign".

Becoming A Trans Inclusive Library - Library Employee Survey

Spencer D. C. Keralis & Syamil Yakin
This data set contains survey results from a 2021 survey of University of Illinois University Library employees conducted as part of the Becoming A Trans Inclusive Library Project to evaluate the awareness of University of Illinois faculty, staff, and student employees regarding transgender identities, and to assess the professional development needs of library employees to better serve trans and gender non-conforming patrons. The survey instrument is available in the IDEALS repository: http://hdl.handle.net/2142/110080.

Multi-State Survey of State Enterprise Zone Laws (Last Updated Jan. 20, 2022)

Michelle Layser
This dataset provides a 50-state (and DC) survey of state-level enterprise zone laws, including summaries and analyses of zone eligibility criteria, eligible investments, incentives to invest in human capital and affordable housing, and taxpayer eligibility.

Multi-State Survey of State New Markets Tax Credit Laws (Last Updated Jan. 19, 2022)

Michelle Layser
This dataset provides a 50-state (and DC) survey of state-level tax credits modeled after the federal New Markets Tax Credit program, including summaries of the tax credit amount and credit periods, key definitions, eligibility criteria, application process, and degree of conformity to federal law.

Correlation Between Soil Quality Indictors including β-glucosidase, Fluorescein Diacetate Hydrolysis and Permanganate Oxidizable Carbon, and Ecosystem Functions represented by Crop Productivity and Greenhouse Gas Emissions

Yushu Xia & Michelle Wander
We summarize peer reviewed literature reporting associations between for three soil quality indicators (SQIs) (β-glucosidase (BG), fluorescein diacetate (FDA) hydrolysis, and permanganate oxidizable carbon (POXC)) and crop yield and greenhouse gas emissions. Peer-reviewed articles published between January of 1990 and May 2018 were searched using the Thomas Reuters Web of Science database (Thomas Reuters, Philadelphia, Pennsylvania) and Google Scholar to identify studies reporting results for: “β-glucosidase”, “permanganate oxidizable carbon”, “active carbon”, “readily oxidizable carbon”, or...

Value of Curation Survey, January 2021

Lisa R Johnston, Renata Gonçalves Curty, Sophia Lafferty-Hess, Hannah Hadley, Jonathan Petters, Hoa Luong, Susan Braxton, Jake Carlson & Wendy A Kozlowski
This dataset includes the raw and augmented survey results from the January 2021 Value of Curation survey run by the Data Curation Network. Distributed to US data repository staff and directors via email listservs the survey received a total of 120 responses. 22 responses were for non-US repositories and three did not provide a repository of reference. A majority of the participants self-identified as staff members with 52 staff and 34 repository directors. The remaining...

Data from: Long-term yields in annual and perennial bioenergy crops in the Midwestern USA

Ilsa Kantola, Michael Masters, Elena Blanc-Betes, Nuria Gomez-Casanovas & Evan DeLucia
Data sets relating to the manuscript “Long-term yields in annual and perennial bioenergy crops in the Midwestern USA” published in Global Change Biology Bioenergy. Field data, including annual peak biomass and harvest yields from maize/soy, miscanthus, switchgrass, and prairie field trials from 2008-2018 are included. Peak and harvest biomass for fertilized and unfertilized miscanthus are included from 2014-2018.

Datasets for \"Phylogenomics of flavobacterial insect nutritional endosymbionts with implications for the phylogeny of their hosts\"

Yanghui Cao & Christopher H. Dietrich
The file “Fla.fasta”, comprising 10526 positions, is the concatenated amino acid alignments of 51 orthologues of 182 bacterial strains. It was used for the maximum likelihood and maximum parsimony analyses of Flavobacteriales. Bacterial species names and strains were used as the sequence names, host names of insect endosymbionts were shown in brackets. The file “16S.fasta” is the alignment of 233 bacterial 16S rRNA sequences. It contains 1455 positions and was used for the maximum likelihood...

PumaCaching

Maximilian Allen
Dataset associated with Allen et al. (In Review): Food caching by a solitary large carnivore supports optimal foraging theory If using this dataset, please cite this manuscript.

Plantar osteochondral fragments in young Standardbreds are associated with minimal joint inflammation at the time of surgical removal

Annette McCoy, Erica Secor, Patrick Roady, Sarah Gray, Julie Klein & Santiago Gutierrez-Nibeyro
Raw arthroscopic scores, histologic scores, cytokine measurements, and performance data for the study cohort described in the accompanying publication.

Data for: Food flows between counties in the Unites States from 2007 to 2017

Deniz Berfin Karakoc, Junren Wang & Megan Konar
This dataset provides estimates of agricultural and food commodity flows [kg] between all county pairs within the United States for the years 2007, 2012, and 2017. The database provides 206.3 million data points, since pairwise information is provided between 3134 counties, for 7 commodity categories, and 3 time periods. The commodity categories correspond to the Standardized Classification of Transported Goods and are: - SCTG 1: Iive animals and fish - SCTG 2: cereal grains -...

Time-lapse Fluorescence Microscopy Images and Gene Expression Data of Single T-Cells Infected with a Minimal HIV Feedback Circuit under 1,806 Drug Treatments

Yiyang Lu, Kathrin Bohn-Wippert, Patrick J. Pazerunas, Jennifer M. Moy, Harpal Singh & Roy D. Dar
Upon treatment removal, spontaneous and random reactivation of latently infected T cells remains a major barrier toward curing HIV. Due to its stochastic nature, fluctuations in gene expression (or “noise”) can bias HIV reactivation from latency, and conventional drug screens for mean gene expression neglect compounds that modulate noise. Here we present a time-lapse fluorescence microscopy image set obtained from a Jurkat T-cell line, infected with a minimal HIV gene circuit, treated with 1,806 small...

Data from: Looking back to look ahead: a vision for soil denitrification research

Maya Almaraz, Michelle Wong & Wendy Yang
Denitrification plays a critical role in regulating ecosystem nutrient availability and anthropogenic reactive nitrogen (N) production. Its importance has inspired an increasing number of studies, yet it remains the most poorly constrained term in terrestrial ecosystem N budgets. We censused the peer-reviewed soil denitrification literature (1975 to 2015) to identify opportunities for future studies to advance our understanding despite the inherent challenges in studying the process. We found that only one-third of studies reported estimates...

Dataset for: An optimisation approach for designing wildlife corridors with ecological and spatial considerations

Yicheng Wang, Peng Qin & Hayri Önal
The fragmentation of wildlife habitats caused by anthropogenic activities has reduced biodiversity and impaired key ecosystem functions. Wildlife corridors play an important role in linking detached habitats. The optimal design of such corridors considering spatial, ecological, and economic factors is addressed in this paper. We present a novel graph-theoretic optimisation approach and a mixed-integer linear programming model to determine an optimal wildlife corridor connecting two given habitat patches. The model maximises the total quality of...

Adaptive shifts underlie the divergence in wing morphology in bombycoid moths

Brett Aiello, Milton Tan, Usama Bin Sikandar, Alexis Alvey, Burhanuddin Bhinderwala, Katalina Kimball, Jesse Barber, Chris Hamilton, Akito Kawahara & Simon Sponberg
The evolution of flapping flight is linked to the prolific success of insects. Across Insecta, wing morphology diversified, strongly impacting aerodynamic performance. In the presence of ecological opportunity, discrete adaptive shifts and early bursts are two processes hypothesized to give rise to exceptional morphological diversification. Here, we use the diverse sister-families Sphingidae and Saturniidae to answer how the evolution of aerodynamically important traits is linked to clade divergence and through what process(es) these traits evolve....

Data from: Genomic evidence of prevalent hybridization throughout the evolutionary history of the fig-wasp pollination mutualism

Gang Wang, Xingtan Zhang, Edward Herre, Charles Cannon, Doyle McKey, Carlos Machado, Wen-Bin Yu, Michael Arnold, Rodrigo Pereira, Ray Ming, Yi-Fei Liu, Yibin Wang, Dongna Ma & Jin Chen
Ficus (figs) and their agaonid wasp pollinators present an ecologically important mutualism that also provides a rich comparative system for studying functional co-diversification throughout its coevolutionary history (~75 million years). We obtained entire nuclear, mitochondrial, and chloroplast genomes for 15 species representing all major clades of Ficus. Multiple analyses of these genomic data suggest that hybridization events have occurred throughout Ficus evolutionary history. Furthermore, cophylogenetic reconciliation analyses detect significant incongruence among all nuclear, chloroplast, and...

Corticothalamic gating of population auditory thalamocortical transmission in mouse

Baher Ibrahim, Caitlin Murphy, Georgiy Yudintsev, Matthew I. Banks, Daniel A. Llano & Yoshitaka Shinagawa
The mechanisms that govern thalamocortical transmission are poorly understood. Recent data have shown that sensory stimuli elicit activity in ensembles of cortical neurons that recapitulate stereotyped spontaneous activity patterns. Here, we elucidate a possible mechanism by which gating of patterned population cortical activity occurs. In this study, sensory-evoked all-or-none cortical population responses were observed in the mouse auditory cortex in vivo and similar stochastic cortical responses were observed in a colliculo-thalamocortical brain slice preparation. Cortical...

Data from: Habitat suitability and connectivity modeling reveal priority areas for Indiana bat (Myotis sodalis) conservation in a complex habitat mosaic

Ashleigh Cable, Joy O'Keefe, Jill Deppe, Tara Hohoff, Steven Taylor & Mark Davis
Context Conservation for the Indiana bat (Myotis sodalis), a federally endangered species in the United States of America, is typically focused on local maternity sites; however, the species is a regional migrant, interacting with the environment at multiple spatial scales. Hierarchical levels of management may be necessary, but we have limited knowledge of landscape-level ecology, distribution, and connectivity of suitable areas in complex landscapes. Objectives We sought to 1) identify factors influencing M. sodalis maternity...

Demographic characteristics, site and phylogenetic distribution of dogs with appendicular osteosarcoma: 744 dogs (2000-2015)

Laura Selmic, Marejka Shaevitz, Joanne Tuohy, Laura Garrett & Audrey Ruple
Objective: To report demographic characteristics of a contemporary population of dogs with appendicular osteosarcoma and assess the relationship between demographic characteristics, site distribution, and phylogenetic breed clusters. Design: Retrospective case series. Methods: A search of the Veterinary Medical Database was performed for dogs with appendicular osteosarcoma as a new diagnosis. Entries were reviewed for the sex, neuter status, age at diagnosis, breed, affected limb, and tumor location. The reported breed for purebred dogs was used...

The choices we make and the impacts they have: Machine learning and species delimitation in North American box turtles (Terrapene spp.)

Bradley T. Martin, Tyler K. Chafin, Marlis R. Douglas, John S. Placyk, Roger D. Birkhead, Christopher A. Phillips & Michael E. Douglas
Model-based approaches that attempt to delimit species are hampered by computational limitations as well as the unfortunate tendency by users to disregard algorithmic assumptions. Alternatives are clearly needed, and machine-learning (M-L) is attractive in this regard as it functions without the need to explicitly define a species concept. Unfortunately, its performance will vary according to which (of several) bioinformatic parameters are invoked. Herein, we gauge the effectiveness of M-L-based species-delimitation algorithms by parsing 64 variably-filtered...

Polyethylene upcycling to long-chain alkylaromatics by tandem hydrogenolysis/aromatization

Fan Zhang, Manhao Zeng, Ryan Yappert, Jiakai Sun, Yu-Hsuan Lee, Anne LaPointe, Baron Peters, Mahdi Abu-Omar & Susannah Scott
The current scale of plastics production and the accompanying waste disposal problems represent a largely untapped opportunity for chemical upcycling. Tandem catalytic conversion by Pt/g-Al2O3 converts various polyethylene grades in high yields (up to 80 wt%) to low molecular-weight liquid/wax products, in the absence of added solvent or H2, with little production of light gases. The major components are valuable long-chain alkylaromatics and alkylnaphthenes (average ca. C30, Ð = 1.1). Coupling exothermic hydrogenolysis with endothermic...

Data from: Long-term persistence of wildlife populations in a pastoral area

Christian Kiffner, John Kioko, Jack Baylis, Camille Beckwith, Craig Brunner, Christine Burns, Vasco Chavez-Molina, Sara Cotton, Laura Glazik, Ellen Loftis, Megan Moran, Caitlin O’Neill, Ole Theisinger & Bernard Kissui
Facilitating coexistence between people and wildlife is a major conservation challenge in East Africa. Some conservation models aim to balance the needs of people and wildlife, but the effectiveness of these models is rarely assessed. Using a case-study approach, we assessed the ecological performance of a pastoral area in northern Tanzania (Manyara Ranch) and established a long-term wildlife population monitoring programme (carried out intermittently from 2003-2008 and regularly from 2011-2019) embedded in a distance sampling...

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    72
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    19
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    4

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    602

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  • University of Illinois
    357
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    216
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    21
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    11
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    11
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    8
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    7
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    6
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    6
  • University of Michigan-Ann Arbor
    5