2 Works

Estimating the extended and hidden species diversity from environmental DNA in hyper-diverse regions

Jean-Baptiste Juhel, Virginie Marques, Rizkie Utama, Indra Vimono, Hagi Sugeha, Kadarusman Kadarusman, Christophe Cochet, Tony Dejean, Andrew Hoey, David Mouillot, Régis Hocdé & Laurent Pouyaud
Species inventories are the building blocks of our assessment of biodiversity patterns and human impact. Yet, historical inventories based on visual observations are often incomplete impairing subsequent analyses of ecological mechanisms, extinction risk and management success. Environmental DNA (eDNA) metabarcoding is an emerging tool that can provide wider biodiversity assessments than classical visual-based surveys. However, eDNA-based inventories remain limited by sampling effort and reference database incompleteness. In this study, we propose a new framework coupling...

Supplementary information for: Redundancy analysis, genome-wide association studies, and the pigmentation of brown trout (Salmo trutta L.)

Bruno Guinand, Théo Valette, Maeva Leitwein, Erick Desmarais, Patrick Berrebi & Jean-Marc Lascaux
The association of molecular variants to phenotypic variation is a main issue in biology, often tackled with genome-wide association studies (GWAS). GWAS are challenging, with increasing, but still limited use in evolutionary biology. We used redundancy analysis (RDA) as a complimentary ordination approach to single- and multi-trait GWAS to explore the molecular basis of pigmentation variation in brown trout (Salmo trutta) belonging to wild populations impacted by hatchery fish. Based on 75,684 single nucleotide polymorphic...

Registration Year

  • 2022
    2

Resource Types

  • Dataset
    2

Affiliations

  • Institut des Sciences de l'Evolution de Montpellier
    2
  • Marine Biodiversity Exploitation and Conservation
    2
  • Centre d'Ecologie Fonctionnelle et Evolutive
    1
  • James Cook University
    1