12 Works

Data from: Leaf development and demography explain photosynthetic seasonality in Amazon evergreen forests

Jin Wu, Loren P. Albert, Aline P. Lopes, Natalia Restrepo-Coupe, Matthew Hayek, Kenia T. Wiedemann, Kaiyu Guan, Scott C. Stark, Bradley Christoffersen, Neill Prohaska, Julia V. Tavares, Suelen Marostica, Hideki Kobayashi, Mauricio L. Ferreira, Kleber Silva Campos, Rodrigo Da Silva, Paulo M. Brando, Dennis G. Dye, Travis E. Huxman, Alfredo R. Huete, Bruce W. Nelson & Scott R. Saleska
In evergreen tropical forests, the extent, magnitude, and controls on photosynthetic seasonality are poorly resolved and inadequately represented in Earth system models. Combining camera observations with ecosystem carbon dioxide fluxes at forests across rainfall gradients in Amazônia, we show that aggregate canopy phenology, not seasonality of climate drivers, is the primary cause of photosynthetic seasonality in these forests. Specifically, synchronization of new leaf growth with dry season litterfall shifts canopy composition toward younger, more light-use...

Data from: Genomics of parallel experimental evolution in Drosophila

, Kate L. Hertweck, Mark A. Phillips, Mira V. Han, Larry G. Cabral, Thomas T. Barter, Lee F. Greer, Molly K. Burke, Laurence D. Mueller & Michael R. Rose
What are the genomic foundations of adaptation in sexual populations? We address this question using fitness-character and whole-genome sequence data from 30 Drosophila laboratory populations. These 30 populations are part of a nearly forty-year laboratory radiation featuring three selection regimes, each shared by ten populations for up to 837 generations, with moderately large effective population sizes. Each of three sets of ten populations that shared a selection regime consist of five populations that have long...

Data from: Tracking transcription factor mobility and interaction in Arabidopsis roots with fluorescence correlation spectroscopy

Natalie M Clark, Elizabeth Hinde, Cara M Winter, Adam P Fisher, Giuseppe Crosti, Ikram Blilou, Enrico Gratton, Philip N Benfey & Rosangela Sozzani
To understand complex regulatory processes in multicellular organisms, it is critical to be able to quantitatively analyze protein movement and protein-protein interactions in time and space. During Arabidopsis development, the intercellular movement of SHORTROOT (SHR) and subsequent interaction with its downstream target SCARECROW (SCR) control root patterning and cell fate specification. However, quantitative information about the spatio-temporal dynamics of SHR movement and SHR-SCR interaction is currently unavailable. Here, we quantify parameters including SHR mobility, oligomeric...

Data from: Rapid divergence and convergence of life-history in experimentally evolved Drosophila melanogaster

Molly K. Burke, Thomas T. Barter, Larry G. Cabral, James N. Kezos, Mark A. Phillips, Grant A. Rutledge, Kevin H. Phung, Richard H. Chen, Huy D. Nguyen, Laurence D. Mueller & Michael R. Rose
Laboratory selection experiments are alluring in their simplicity, power, and ability to inform us about how evolution works. A longstanding challenge facing evolution experiments with metazoans is that significant generational turnover takes a long time. In this work, we present data from a unique system of experimentally evolved laboratory populations of Drosophila melanogaster that have experienced three distinct life-history selection regimes. The goal of our study was to determine how quickly populations of a certain...

Data from: Patterns of physiological decline due to age and selection in Drosophila melanogaster

Parvin Shahrestani, Julian B. Wilson, Laurence D. Mueller & Michael R. Rose
In outbred sexually reproducing populations, age-specific mortality rates reach a plateau in late life following the exponential increase in mortality rates that marks aging. Little is known about what happens to physiology when cohorts transition from aging to late life. We measured age-specific values for starvation resistance, desiccation resistance, time-in-motion and geotaxis in ten Drosophila melanogaster populations: five populations selected for rapid development and five control populations. Adulthood was divided into two stages, the aging...

Data from: Sexual selection on male vocal fundamental frequency in humans and other anthropoids

David A. Puts, Alexander K. Hill, Drew H. Bailey, Robert S. Walker, Drew Rendall, John R. Wheatley, Lisa L. M. Welling, Khytam Dawood, Rodrigo A. Cárdenas, Robert P. Burriss, Nina G. Jablonski, Mark D. Shriver, Daniel J. Weiss, Adriano R. Lameira, Coren L. Apicella, Michael J. Owren, Claudia Barelli, Mary E. Glenn & Gabriel Ramos-Fernandez
In many primates, including humans, the vocalizations of males and females differ dramatically, with male vocalizations and vocal anatomy often seeming to exaggerate apparent body size. These traits may be favoured by sexual selection because low-frequency male vocalizations intimidate rivals and/or attract females, but this hypothesis has not been systematically tested across primates, nor is it clear why competitors and potential mates should attend to vocalization frequencies. Here we show across anthropoids that sexual dimorphism...

Data from: Going with the flow: the role of ocean circulation in global marine ecosystems under a changing climate

Simon J. Van Gennip, Ekaterina E. Popova, Andrew Yool, Gretta T. Pecl, Alistair J. Hobday & Cascade J. B. Sorte
Ocean warming, acidification, deoxygenation and reduced productivity are widely considered to be the major stressors to ocean ecosystems induced by emissions of CO2. However, an overlooked stressor is the change in ocean circulation in response to climate change. Strong changes in the intensity and position of the western boundary currents have already been observed, and the consequences of such changes for ecosystems are beginning to emerge. In this study, we address climatically induced changes in...

Data from: Transient inhibition and long-term facilitation of locomotion by phasic optogenetic activation of serotonin neurons

Patrícia A. Correia, Eran Lottem, Dhruba Banerjee, Ana S. Machado, Megan R. Carey & Zachary F. Mainen
Serotonin (5-HT) is associated with mood and motivation but the function of endogenous 5-HT remains controversial. Here, we studied the impact of phasic optogenetic activation of 5-HT neurons in mice over time scales from seconds to weeks. We found that activating dorsal raphe nucleus (DRN) 5-HT neurons induced a strong suppression of spontaneous locomotor behavior in the open field with rapid kinetics (onset ≤1 s). Inhibition of locomotion was independent of measures of anxiety or...

Data from: Gene duplication and gene expression changes play a role in the evolution of candidate pollen feeding genes in Heliconius butterflies

Gilbert Smith, Aide Macias-Muñoz & Adriana D. Briscoe
Heliconius possess a unique ability among butterflies to feed on pollen. Pollen feeding significantly extends their lifespan, and is thought to have been important to the diversification of the genus. We used RNA sequencing to examine feeding-related gene expression in the mouthparts of four species of Heliconius and one non-pollen feeding species, Eueides isabella. We hypothesized that genes involved in morphology and protein metabolism might be upregulated in Heliconius because they have longer proboscides than...

Data from: Ecological, evolutionary and human-mediated determinants of poeciliid species richness on Caribbean islands

Andrew I. Furness, David N. Reznick & John C. Avise
Aim: The theory of island biogeography provides a predictive framework relating species richness to island size and distance from the mainland. However, the theory as originally formulated does not necessarily scale to large islands and continental landmasses that are capable of generating species through in situ speciation (rather than entirely by colonization), nor does it necessarily account for how human introduction of species alters traditional biogeographical patterns. Here, we examine the ecological (colonization and extinction),...

Data from: The comparative hydrodynamics of rapid rotation by predatory appendages

Mathew J. McHenry, Philip S. L. Anderson, Sam Van Wassenbergh, David Matthews, Adam Summers & S. N. Patek
Countless aquatic animals rotate appendages through the water, yet fluid forces are typically modeled with translational motion. To elucidate the hydrodynamics of rotation, we analyzed the raptorial appendages of mantis shrimp (Stomatopoda) using a combination of flume experiments, mathematical modeling and phylogenetic comparative analyses. We found that computationally efficient blade-element models offered an accurate first-order approximation of drag, when compared with a more elaborate computational fluid-dynamic model. Taking advantage of this efficiency, we compared the...

Data from: Deep phylogenomics of a tandem-repeat galectin regulating appendicular skeletal pattern formation

Ramray Bhat, Mahul Chakraborty, Tilmann Glimm, Thomas A. Stewart & Stuart A. Newman
Background: A multiscale network of two galectins Galectin-1 (Gal-1) and Galectin-8 (Gal-8) patterns the avian limb skeleton. Among vertebrates with paired appendages, chondrichthyan fins typically have one or more cartilage plates and many repeating parallel endoskeletal elements, actinopterygian fins have more varied patterns of nodules, bars and plates, while tetrapod limbs exhibit tandem arrays of few, proximodistally increasing numbers of elements. We applied a comparative genomic and protein evolution approach to understand the origin of...

Registration Year

  • 2016

Resource Types

  • Dataset


  • University of California, Irvine
  • University of Washington
  • Duke University
  • University of Massachusetts Amherst
  • University of Antwerp
  • Museo delle Scienze
  • Oregon State University
  • University of Tasmania
  • University of Southampton
  • National Autonomous University of Mexico