24 Works

Data from: Structure of the rare archaeal biosphere and seasonal dynamics of active ecotypes in surface coastal waters

Najwa Taib, Mylène Hugoni, Didier Debroas, Isabelle Domaizon, Isabelle Jouan-Dufournel, Gisèle Bronner, Ian Salter, Hélène Agogué, Isabelle Mary & Pierre E. Galand
Marine Archaea are important players among microbial plankton and significantly contribute to biogeochemical cycles, but details regarding their community structure and long-term seasonal activity and dynamics remain largely unexplored. In this study, we monitored the inter-annual archaeal community composition of abundant and rare biospheres in northwestern Mediterranean Sea surface waters by pyrosequencing 16S rDNA and rRNA. A detailed analysis of the rare biosphere structure showed that the rare archaeal community was composed of three distinct...

Data from: A global perspective on the trophic geography of sharks

Christopher Stephen Bird, Ana Veríssimo, Sarah Magozzi, Kátya G. Abrantes, Alex Aguilar, Hassan Al-Reasi, Adam Barnett, Dana M. Bethea, Gérard Biais, Asuncion Borrell, Marc Bouchoucha, Mariah Boyle, Edward J. Brooks, Juerg Brunnschweiler, Paco Bustamante, Aaron Carlisle, Diana Catarino, Stéphane Caut, Yves Cherel, Tiphaine Chouvelon, Diana Churchill, Javier Ciancio, Julien Claes, Ana Colaço, Dean L. Courtney … & Clive N. Trueman
Sharks are a diverse group of mobile predators that forage across varied spatial scales and have the potential to influence food web dynamics. The ecological consequences of recent declines in shark biomass may extend across broader geographic ranges if shark taxa display common behavioural traits. By tracking the original site of photosynthetic fixation of carbon atoms that were ultimately assimilated into muscle tissues of 5,394 sharks from 114 species, we identify globally consistent biogeographic traits...

Do human infrastructures shape nest distribution in the landscape depending on individual personality in a farmland bird of prey?

Juliette Rabdeau, Beatriz Arroyo, Francois Mougeot, Isabelle Badenhausser, Vincent Bretagnolle & Karine Monceau
1. Individuals´ distribution across habitats may depend on their personality. Human activities and infrastructures are critical elements of the landscape that may impact the habitat selection process. However, depending on their personality, individuals may respond differently to these unnatural elements. 2. In the present study, we first investigated whether some human infrastructures (buildings, roads and paths) shaped Montagu’s harrier nest spatial distribution in the landscape according to female personality (boldness). Second, we tested if the...

Bird migration in space and time: chain migration by Eurasian curlew (Numenius arquata arquata) along the East Atlantic Flyway

Rebecca Pederson, Pierrick Bocher, Stefan Garthe, Jérôme Fort, Moritz Mercker, Verena Auernhammer, Martin Boschert, Philippe Delaporte, Jaanus Elts, Wolfgang Fiedler, Michał Korniluk, Dominik Krupiński, Riho Marja, Pierre Rousseau, Lukas Thiess & Philipp Schwemmer
Migration patterns in birds vary in space and time. Spatial patterns include chain, leap frog, and telescopic migration. Temporal patterns such as migration duration, number and duration of stopovers may vary according to breeding latitude, sex and season. This study aimed to verify these patterns in a long-distance migrant, the Eurasian curlew (Numenius arquata arquata), and to provide a synopsis of spatio-temporal migration patterns in this species of concern throughout the East Atlantic Flyway. We...

Data from: Resveratrol supplementation reduces oxidative stress and modulates the immune response in free-living animals during a viral infection

Manrico Sebastiano, Marcel Eens, Simone Messina, Hamada Ablelgawad, Kévin Pineau, Gerrit T.S. Beemster, Olivier Chastel, David Costantini, Hamada AbdElgawad & Gerrit T. S. Beemster
1. Diet quality may have an important effect on the regulation of oxidative status and the immune system during an infectious disease. However, the relationship among intake of specific dietary molecules, an individual’s oxidative status and the occurrence and progress of a viral disease remains almost unexplored in free-living organisms. 2. Here, we study a wild, long-lived animal, the Magnificent frigatebird Fregata magnificens to investigate: i) the differences in a number of physiological traits (biomarkers...

Data from: Universal metabolic constraints shape the evolutionary ecology of diving in animals

Wilco Verberk, Piero Calosi, Francois Brischoux, John Spicer, Theodore Garland & David Bilton
Diving as a lifestyle has evolved on multiple occasions when air-breathing terrestrial animals invaded the aquatic realm, and diving performance shapes the ecology and behaviour of all air-breathing aquatic taxa, from small insects to great whales. Using the largest dataset yet assembled, we show that maximum dive duration increases predictably with body mass in both ectotherms and endotherms. Compared to endotherms, ectotherms can remain submerged for longer, but the mass scaling relationship for dive duration...

Data from: Timing of spring departure of long distance migrants correlates with previous year's conditions at their breeding site

Françoise Amélineau, Nicolas Delbart, Philipp Schwemmer, Riho Marja, Jérôme Fort, Stefan Garthe, Jaanus Elts, Philippe Delaporte, Pierre Rousseau, Françoise Duraffour & Pierrick Bocher
Precise timing of the migration is crucial for animals targeting seasonal resources at locations encountered across their annual cycle. Upon departure, long distance migrants need to anticipate unknown environmental conditions at their arrival site, and they do zkzdsxso with their internal annual clock. Here, we tested the hypothesis that long distance migrants synchronize their circannual clock according to the phenology of their environment during the breeding season, and therefore adjust their spring departure date according...

Data from: Assessing cetacean surveys throughout the Mediterranean Sea: a gap analysis in environmental space

Laura Mannocci, Jason J. Roberts, Patrick N. Halpin, Matthieu Authier, Olivier Boisseau, Mohamed Nejmeddine Bradai, Ana Cañadas, Carla Chicote, Léa David, Nathalie Di-Méglio, Caterina M. Fortuna, Alexandros Frantzis, Manel Gazo, Tilen Genov, Philip S. Hammond, Drasko Holcer, Kristin Kaschner, Dani Kerem, Giancarlo Lauriano, Tim Lewis, Giuseppe Notarbartolo Di Sciara, Simone Panigada, Juan Antonio Raga, Aviad Scheinin, Vincent Ridoux … & Joseph Vella
Heterogeneous data collection in the marine environment has led to large gaps in our knowledge of marine species distributions. To fill these gaps, models calibrated on existing data may be used to predict species distributions in unsampled areas, given that available data are sufficiently representative. Our objective was to evaluate the feasibility of mapping cetacean densities across the entire Mediterranean Sea using models calibrated on available survey data and various environmental covariates. We aggregated 302,481...

Data from: A comparative analysis of the behavioral response to fishing boats in two albatross species

Julien Collet, Samantha C. Patrick & Henri Weimerskirch
Anthropogenic food resources have significantly modified the foraging behavior of many animal species. They enhance large multi-specific aggregations of individuals, with strong ecological consequences. It is challenging to predict how individuals or species can differ in their reaction to these resources. For instance, there are wide variations in seabird species abundance behind fishing boats, and individual variations in interaction rates. Whether this is reflecting variations in fine-scale encounter rates or rather variations in attraction strength...

Data from: Herbivore effect traits and their impact on plant community biomass: an experimental test using grasshoppers

Hélène Deraison, Isabelle Badenhausser, Luca Börger & Nicolas Gross
1. Using trait-based approaches to study trophic interactions may represent one of the most promising approaches to evaluate the impact of trophic interactions on ecosystem functioning. To achieve this goal, it is necessary to clearly identify which traits determine the impact of one trophic level on another. 2. Using functionally contrasting grasshopper species, we tested the ability of multiple traits (morphological, chemical and biomechanical) to predict herbivore impact on the biomass of a diverse plant...

Data from: Flight paths of seabirds soaring over the ocean surface enable measurement of fine-scale wind speed and direction

Yoshinari Yonehara, Yusuke Goto, Ken Yoda, Yutaka Watanuki, Lindsay C. Young, Henri Weimerskirch, Charles-André Bost & Katsufumi Sato
Monitoring ocean surface winds is essential for understanding ocean and atmosphere interactions and weather forecasts. However, wind measured by satellite scatterometers and buoys are spatially and temporally coarse, particularly in coastal areas. We deployed small global positioning system units on soaring seabirds to record their tracks. Seabirds were accelerated by tail winds or slowed down by head winds during flight, so their flight speed changed in relation to wind speed and direction. Taking advantage of...

Data from: To breed or not to breed: endocrine response to mercury contamination by an Arctic seabird

Sabrina Tartu, Aurélie Goutte, Paco Bustamante, Frédéric Angelier, Børge Moe, Céline Clément-Chastel, Claus Bech, Geir Wing Gabrielsen, Jan Ove Bustnes & Olivier Chastel
Mercury, a ubiquitous toxic element, is known to alter expression of sex steroids and to impair reproduction across vertebrates but the mechanisms underlying these effects are not clearly identified. We examined whether contamination by mercury predicts the probability to skip reproduction in black-legged kittiwakes (Rissa tridactyla) from Svalbard. We also manipulated the endocrine system to investigate the mechanism underlying this relationship. During the pre-laying period, we injected exogenous GnRH (gonadotropin-releasing hormone) to test the ability...

Data from: The relative importance of green infrastructure as refuge habitat for pollinators increases with local land-use intensity

Pengyao Li, David Kleijn, Isabelle Badenhausser, Carlos Zaragoza-Trello, Nicolas Gross, Ivo Raemakers & Jeroen Scheper
1. Agricultural expansion and intensification have resulted in strong declines in farmland biodiversity across Europe. In many intensively farmed landscapes, linear landscape elements such as field boundaries, road verges and ditch banks are the main remaining green infrastructures providing refuge for biodiversity, and as such play a pivotal role in agri-environmental policies aiming at mitigating biodiversity loss. Yet, while we have a fairly good understanding of how agricultural intensification influences biodiversity on farmland, little is...

Lack of synchronized breeding success in a seabird community: extreme events, niche separation, and environmental variability

Casey Youngflesh, Yun Li, Heather Lynch, Karine Delord, Christophe Barbraud, Rubao Ji & Stephanie Jenouvrier
Synchrony in ecological systems, the degree to which elements respond similarly over time or space, can inform our understanding of how ecosystems function and how they are responding to global change. While studies of ecological synchrony are often focused on within-species dynamics, synchrony among species may provide important insights into how dynamics of one species are indicative of conditions relevant to the larger community, with both basic and applied implications. Ecological theory suggests there may...

Seascape genetics of the Atlantic spotted dolphin (Stenella frontalis) based on mitochondrial DNA

Karina Bohrer Do Amaral, Dalia C. Barragán-Barrera, Roosevelt A. Mesa-Gutiérrez, Nohelia Farias-Curtidor, Susana J. Caballero Gaitán, Paula Méndez-Fernandez, Marcos C. Oliveira Santos, Caroline Rinaldi, Renato Rinaldi, Salvatore Siciliano, Vidal Martín, Manuel Carillo, Ana Carolina O. De Meirelles, Valentina Franco-Trecu, Nelson J. R. Fagundes, Ignacio Benites Moreno, L. Lacey Knowles & Ana Rita Amaral
The Atlantic spotted dolphin (Stenella frontalis) is endemic to tropical, subtropical, and warm temperate waters of the Atlantic Ocean. Throughout its distribution, both geographic distance and environmental variation may contribute to population structure of the species. In this study we follow a seascape genetics approach to investigate population differentiation of Atlantic spotted dolphins based on a large worldwide dataset and the relationship with marine environmental variables. The results revealed that the Atlantic spotted dolphin exhibits...

Data from: A risk-based forecast of extreme mortality events in small cetaceans: using stranding data to inform conservation practice

Colin Bouchard, Cameron Bracken, Willy Dabin, Olivier Van Canneyt, Vincent Ridoux, Jérôme Spitz & Matthieu Authier
Effective conservation requires monitoring and pro-active risk assessments. We studied the effects of at-sea mortality events (ASMEs) in marine mammals over two decades (1990-2012) and built a risk- based indicator for the European Union’s Marine Strategy Framework Directive (MSFD). Strandings of harbour porpoises (Phocoena phocoena), short-beaked common dolphins (Delphinus delphis), and striped dolphins (Stenella coeruleoalba) along French coastlines were analysed using Extreme Value Theory (EVT). EVT operationalises what is an extreme ASME, and allows the...

Data from: Ecological opportunities and specializations shaped genetic divergence in a highly mobile marine top predator

Marie Louis, Michael C. Fontaine, Jérôme Spitz, Erika Schlund, Willy Dabin, Robert Deaville, Florence Caurant, Yves Cherel, Christophe Guinet & Benoit Simon-Bouhet
Environmental conditions can shape genetic and morphological divergence. Release of new habitats during historical environmental changes was a major driver of evolutionary diversification. Here, forces shaping population structure and ecotype differentiation (‘pelagic’ and ‘coastal’) of bottlenose dolphins in the North-east Atlantic were investigated using complementary evolutionary and ecological approaches. Inference of population demographic history using approximate Bayesian computation indicated that coastal populations were likely founded by the Atlantic pelagic population after the Last Glacial Maxima...

Data from: Climate change and functional traits affect population dynamics of a long-lived seabird

Stephanie Jenouvrier, Marine Desprez, Rémi Fay, Christophe Barbraud, Henri Weimerskirch, Karine Delord & Hal Caswell
1. Recent studies unravelled the effect of climate changes on populations through their impact on functional traits and demographic rates in terrestrial and freshwater ecosystems, but such understanding in marine ecosystems remains incomplete. 2. Here, we evaluate the impact of the combined effects of climate and functional traits on population dynamics of a long-lived migratory seabird breeding in the southern ocean: the black-browed albatross (Thalassarche melanophris, BBA). We address the following prospective question: ''Of all...

Agricultural intensification reduces plant taxonomic and functional diversity across European arable systems.

Carlos P Carmona, Irene Guerrero, Begoña Peco, Manuel B. Morales, Juan J Onate, Tomas Pärt, Teja Tscharntke, Jaan Liira, Tsipe Aavik, Mark Emmerson, Frank Berendse, Piotr Ceryngier, Vincent Bretagnolle, Wolfgang Weisser & Jan Bengtsson
1. Agricultural intensification is one of the main drivers of species loss worldwide, but there is still a lack of information about its effect on functional diversity of arable weeds communities. 2. Using a large scale pan European study including 786 fields within 261 farms from eight countries, we analysed differences in the taxonomic and functional diversity of arable weeds assemblages across different levels of agricultural intensification in. We estimated weed species frequency in each...

Data for: Serotonin transporter (SERT) polymorphisms, personality and problem-solving in urban great tits

Andrea Grunst, Melissa Grunst, Nicky Staes, Bert Thys, Rianne Pinxten & Marcel Eens
Understanding underlying genetic variation can elucidate how diversity in behavioral phenotypes evolves and is maintained. Genes in the serotonergic signaling pathway, including the serotonin transporter gene (SERT), are candidates for affecting animal personality, cognition and fitness. In a model species, the great tit (Parus major), we reevaluated previous findings suggesting relationships between SERT polymorphisms, neophobia, exploratory behavior and fitness parameters, and performed a first test of the relationship between single nucleotide polymorphisms (SNPs) in SERT...

Data from: Mercury exposure in an endangered seabird: long-term changes and relationships with trophic ecology and breeding success

William Mills, Paco Bustamante, Rona McGill, Orea Anderson, Stuart Bearhop, Yves Cherel, Stephen Votier & Richard Phillips
Mercury (Hg) is an environmental contaminant which, at high concentrations, can negatively influence avian physiology and demography. Albatrosses (Diomedeidae) have higher Hg burdens than all other avian families. Here, we measure total Hg (THg) concentrations of body feathers from adult grey-headed albatrosses (Thalassarche chrysostoma) at South Georgia. Specifically, we: (i) analyse temporal trends at South Georgia (1989–2013) and make comparisons with other breeding populations; (ii) identify factors driving variation in THg concentrations; and, (iii) examine...

Habitat filtering differentially modulates phylogenetic and functional diversity relationships between predatory arthropods

Aurélien Ridel, Denis Lafage, Pierre Devogel, Thomas Lacoue-Labarthe & Julien Pétillon
Mechanisms underlying biological diversities at different scales have received significant attention over the last decades. The hypothesis whether local abiotic factors, driving functional and phylogenetic diversities, can differ among taxa of arthropods remains under-investigated. In this study, we compared correlations and drivers of functional (FD) and phylogenetic (PD) diversities between spiders and carabids, two dominant taxa of ground-dwelling arthropods in salt marshes. Both taxa exhibited high correlation between FD and PD; the correlation was even...

High mortality rates in a juvenile free-ranging marine predator and links to dive and forage ability

Sam L Cox, Matthieu Authier, Florian Orgeret, Henri Weimerskirch & Christophe Guinet
1. High juvenile mortality rates are typical of many long-lived marine vertebrate predators. Insufficient development in dive and forage ability are considered key drivers of this. However, direct links to survival outcome are sparse, particularly in free-ranging marine animals that may not return to land. 2. In this study, we conduct exploratory investigations toward early mortality in juvenile southern elephant seals Mirounga leonina. 20 post-weaning pups were equipped with (1) a new generation satellite relay...

Data from: Postglacial climate changes and rise of three ecotypes of harbor porpoises, Phocoena phocoena, in western Palearctic waters

Michaël C. Fontaine, Kathleen Roland, Isabelle Calves, Frederic Austerlitz, Friso P. Palstra, Krystal A. Tolley, Sean Ryan, Marisa Ferreira, Thierry Jauniaux, Angela Llavona, Bayram Öztürk, Ayaka A. Öztürk, Vincent Ridoux, Emer Rogan, Ursula Siebert, Marina Sequeira, Gísli A. Vikingsson, Asunción Borrell, Johan R. Michaux & Alex Aguilar
Despite no obvious barriers to gene flow in the marine realm, environmental variation and ecological specializations can lead to genetic differentiation in highly mobile predators. Here, we investigated the genetic structure of the harbor porpoise over the entire species distribution range in western Palearctic waters. Combined analyses of ten microsatellite loci and a 5,085 bases-pairs portion of the mitochondrial genome revealed the existence of three ecotypes, equally divergent at the mitochondrial genome, distributed in the...

Registration Year

  • 2022
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  • 2013

Resource Types

  • Dataset


  • University of La Rochelle
  • French National Centre for Scientific Research
  • Centre d'Etudes Biologiques de Chizé
  • University of Antwerp
  • Duke University
  • University of Barcelona
  • National Research Institute for Agriculture, Food and Environment
  • Ecosystèmes, Biodiversité, Evolution
  • South African National Biodiversity Institute
  • Estación Biológica de Doñana