113 Works

New Magnetic Field Models of the Moon

Dhananjay Ravat, Michael Purucker & Nils Olsen
We use L1-norm model regularization of |Br| component at the surface on magnetic monopoles bases and along-track magnetic field differences alone (without vector observations) to derive high quality global magnetic field models at the surface of the Moon. The practical advantages to this strategy are: monopoles are more stable at closer spacing in comparison to dipoles, improving spatial resolution; L1-norm model regularization leads to sparse models which may be appropriate for the Moon which has...

Perdigão: ortophotos in 5cm and 20cm resolution

José Laginha Palma, Vasco Batista, Vitor Costa Gomes, João Correia Lopes, Jakob Mann & Ebba Dellwik

Accelerating ice loss from peripheral glaciers in North Greenland

Shfaqat Abbas Khan, William Colgan, Thomas A. Neumann, Michiel R. Van Den Broeke, Kelly M. Brunt, Brice Noël, Jonathan L. Bamber, Javed Hassan & Anders A. Bjørk
In recent decades, Greenland’s peripheral glaciers have experienced large-scale mass loss, resulting in a substantial contribution to sea-level rise. Only 4% of Greenland’s ice cover are small peripheral glaciers that are distinct from the ice sheet proper. Despite comprising this relatively small area, these small peripheral glaciers are responsible for 11% of the ice loss associated with Greenland’s recent sea-level rise contribution. Using the satellite laser platforms ICESat and ICESat-2, we estimate that ice loss...

Data from: Microevolution in time and space: SNP analysis of historical DNA reveals dynamic signatures of selection in Atlantic cod

Nina O. Therkildsen, Jakob Hemmer-Hansen, Thomas D. Als, Douglas P. Swain, M. Joanne Morgan, Edward A. Trippel, Stephen R. Palumbi, Dorte Meldrup & Einar E. Nielsen
Little is known about how quickly natural populations adapt to changes in their environment and how temporal and spatial variation in selection pressures interact to shape patterns of genetic diversity. We here address these issues with a series of genome scans in four overfished populations of Atlantic cod (Gadus morhua) studied over an 80-year period. Screening of >1000 gene-associated single-nucleotide polymorphisms (SNPs) identified 77 loci that showed highly elevated levels of differentiation, likely as an...

Data from: The use of archived tags in retrospective genetic analysis of fish

Sara Bonanomi, Nina Overgaard Therkildsen, Rasmus Berg Hedeholm, Jakob Hemmer-Hansen & Einar Eg Nielsen
Collections of historical tissue samples from fish (e.g. scales and otoliths) stored in museums and fisheries institutions are precious sources of DNA for conducting retrospective genetic analysis. However, in some cases only external tags used for documentation of spatial dynamics of fish populations have been preserved. Here we test the usefulness of fish tags as a source of DNA for genetic analysis. We extract DNA from historical tags from cod collected in Greenlandic waters between...

Data from: Parallel evolution and adaptation to environmental factors in a marine flatfish: implications for fisheries and aquaculture management of the turbot (Scophthalmus maximus)

Fernanda Dotti Do Prado, Manuel Vera, Miguel Hermida, Carmen Bouza, Belén G. Pardo, Román Vilas, Andrés Blanco, Carlos Fernández, Francesco Maroso, Gregory E. Maes, Cemal Turan, Filip A.M. Volckaert, John B. Taggart, Adrian Carr, Rob Ogden, Einar E. Nielsen, The Aquatrace Consortium, Paulino Martínez & Filip A. M. Volckaert
Unraveling adaptive genetic variation represents, in addition to the estimate of population demographic parameters, a cornerstone for the management of aquatic natural living resources, which in turn, represent the raw material for breeding programs. The turbot (Scophthalmus maximus) is a marine flatfish of high commercial value living on the European continental shelf. While wild populations are declining, aquaculture is flourishing in Southern Europe. We evaluated the genetic structure of turbot throughout its natural distribution range...

Data from: Hypoxic areas, density-dependence and food limitation drive the body condition of a heavily exploited marine fish predator

Michele Casini, Filip Käll, Martin Hansson, Maris Plikshs, Tatjana Baranova, Olle Karlsson, Karl Lundström, Stefan Neuenfeldt, Anna Gardmark & Joakim Hjelm
Investigating the factors regulating fish condition is crucial in ecology and the management of exploited fish populations. The body condition of cod (Gadus morhua) in the Baltic Sea has dramatically decreased during the past two decades, with large implications for the fishery relying on this resource. Here, we statistically investigated the potential drivers of the Baltic cod condition during the past 40 years using newly compiled fishery-independent biological data and hydrological observations. We evidenced a...

Data from: Rapid shifts in the thermal sensitivity of growth but not development rate causes temperature-size response variability during ontogeny in arthropods

Curtis R. Horne, Andrew G. Hirst, David Atkinson, Rodrigo Almeda & Thomas Kiørboe
Size at maturity in ectotherms commonly declines with warming. This near-universal phenomenon, formalised as the temperature-size rule, has been observed in over 80% of tested species, from bacteria to fish. The proximate cause has been attributed to the greater temperature dependence of development rate than growth rate, causing individuals to develop earlier but mature smaller in the warm. However, few studies have examined the ontogenetic progression of the temperature-size response at high resolution. Using marine...

HLA Class II specificity assessed by high-density peptide microarray interactions

Thomas Osterbye, Morten Nielsen, Nadine L. Dudek, Sri H. Ramarathinam, Anthony W. Purcell, Claus Schafer-Nielsen & Soren Buus
The ability to predict and/or identify MHC binding peptides is an essential component of T cell epitope discovery; something that ultimately should benefit the development of vaccines and immunotherapies. In particular, MHC class I (MHC-I) prediction tools have matured to a point where accurate selection of optimal peptide epitopes is possible for virtually all MHC-I allotypes; in comparison, current MHC class II (MHC-II) predictors are less mature. Since MHC-II restricted CD4+ T cells control and...

Life history traits and abundance of Northeast Atlantic fish

Anna Rindorf
Life history characteristics such as asymptotic length L∞, growth rate K, the length at which 50% of the individuals have reached maturity Lmat, and natural mortality M are therefore often used to indicate the sensitivity of different species to fishing. When species-specific information is missing, an estimate of the maximum length Lmax of a species can be used to infer asymptotic length, growth rate, natural mortality, and proportion mature at length. Here, we provide a...

The effect of temperature on appetite in fish

Fredrik Jutfelt, Tommy Norin, Eirik Åsheim, Lauren Rowsey, Anna Andreassen, Rachael Morgan, Timothy Clark & Ben Speers-Roesch
Temperature has a dramatic effect on the physiology of ectothermic animals, impacting most of their biology. When temperatures increase above optimal for an animal, their growth gradually decreases. The main mechanism behind this growth rate reduction is unknown. Here, we suggest the ‘aerobic scope protection’ hypothesis as a mechanistic explanation for the reduction in growth. After a meal, metabolic rate, and hence oxygen consumption rate, transiently increases in a process called specific dynamic action (SDA)....

The biomolecular characterisation of a finger ring contextually dated to the emergence of the Early Neolithic from Syltholm, Denmark

Theis Jensen, Meaghan Mackie, Alberto Taurozzi, Liam Lannigan, Carsten Gundelach, Jesper Olsen, Søren Sørensen, Matthew Collins, Mikkel Sørensen & Hannes Schroeder
We present the analysis of an osseous finger ring from a predominantly early Neolithic context in Denmark. To characterise the artefact and identify the raw material used for its manufacture, we performed micro-computed tomography (Micro CT) scanning, zooarchaeology by mass spectrometry (ZooMS) peptide mass fingerprinting, as well as protein sequencing by liquid chromatography tandem mass spectrometry (LC-MS/MS). We conclude that the ring was made from long bone or antler due to the presence of osteons...

Data from: The evolution of competitive ability for essential resources

Joey R. Bernhardt, Pavel Kratina, Aaron Pereira, Manu Tamminen, Mridul K. Thomas & Anita Narwani
Competition for limiting resources is among the most fundamental ecological interactions and has long been considered a key driver of species coexistence and biodiversity. Species' minimum resource requirements, their R*s, are key traits that link individual physiological demands to the outcome of competition. However, a major question remains unanswered - to what extent are species’ competitive traits able to evolve in response to resource limitation? To address this knowledge gap, we performed an evolution experiment...

Data from: A replicated climate change field experiment reveals rapid evolutionary response in an ecologically important soil invertebrate

Thomas Bataillon, Nicolas Galtier, Aurelien Bernard, Nicolai Cryer, Nicolas Faivre, Sylvain Santoni, Dany Severac, Theis N. Mikkelsen, Klaus S. Larsen, Claus Beier, Jesper G. Sørensen, Martin Holmstrup, Bodil Ehlers, Bodil K. Ehlers & Teis N. Mikkelsen
Whether species can respond evolutionarily to current climate change is crucial for the persistence of many species. Yet, very few studies have examined genetic responses to climate change in manipulated experiments carried out in natural field conditions. We examined the evolutionary response to climate change in a common annelid worm using a controlled replicated experiment where climatic conditions were manipulated in a natural setting. Analyzing the transcribed genome of 15 local populations, we found that...

Data from: Bottom trawling affects fish condition through changes in the ratio of prey availability to density of competitors

Jan Geert Hiddink, Joan Moranta, Stephen Balestrini, Marija Sciberras, Marine Cendrier, Rosie Bowyer, Michel J. Kaiser, Mattias Sköld, Patrik Jonsson, Francois Bastardie & Hilmar Hinz
Bottom-trawl fisheries are widespread and cause mortality of benthic invertebrates, which in turn may lead to a decrease in the availability of prey for target fish species. Exploitation also reduces the abundance of the fish species themselves. Modelling studies have shown that bottom trawling could lead to both increases and decreases in fish production, but so far empirical evidence to test these ideas has been very limited. We hypothesize that the effect of bottom trawling...

Data from: Reproductive isolation related to mimetic divergence in the poison frog Ranitomeya imitator

Evan Twomey, Jacob S. Vestergaard & Kyle Summers
In a mimetic radiation—when a single species evolves to resemble different model species—mimicry can drive within-species morphological diversification, and, potentially, speciation. While mimetic radiations have occurred in a variety of taxa, their role in speciation remains poorly understood. We study the Peruvian poison frog Ranitomeya imitator, a species that has undergone a mimetic radiation into four distinct morphs. Using a combination of colour–pattern analysis, landscape genetics and mate-choice experiments, we show that a mimetic shift...

The Vinca minor genome highlights conserved evolutionary traits in monoterpene indole alkaloid synthesis

Emily Stander, Clément CUELLO, Caroline Birer-Williams, Natalja Kulagina, Hans J. Jansen, Ines Carqueijeiro, Louis-Valentin Méteignier, Valentin Vergès, Audrey Oudin, Nicolas Papon, Ron P. Dirks, Michael Krogh Jensen, Sarah E. O’Connor, Thomas Dugé de Bernonville, Sébastien Besseau & Vincent Courdavault
Vinca minor genome sequence (Vinca_minor_genome_v1.0.fasta), genome annotation file (vinca_minor_annotation.gff), transcript abundance estimates (vinca_minor.tpm) and a file containing a personalized script with dependency files (gene_cluster_analysis.tar.xz).

Processed airborne radio-echo sounding data from the POLARGAP survey covering the South Pole, and Foundation and Recovery Glaciers, East Antarctica (2015/2016)

Fausto Ferraccioli, Rene Forsberg, Kenichi Matsuoka, Arne Olesen, Tom Jordan, Hugh Corr, Carl Robinson & Jack Kohler
During the austral summer of 2015/16, a major international collaboration funded by the European Space Agency (ESA) and with in-kind contribution from the British Antarctic Survey, the Technical University of Denmark (DTU), the Norwegian Polar Institute (NPI) and the US National Science Foundation (NSF), acquired ~38,000 line km of aerogeophysical data. The primary objective of the POLARGAP campaign was to carry out an airborne gravity survey covering the southern polar gap of the ESA gravity...

Data from: Transgenerational interactions between pesticide exposure and warming in a vector mosquito

Tam T. Tran, Lizanne Janssens, Khuong V. Dinh & Robby Stoks
While transgenerational plasticity may buffer ectotherms to warming and pesticides separately, it remains unknown how combined exposure to warming and pesticides in the parental generation shapes the vulnerability to these stressors in the offspring. We studied the transgenerational effects of single and combined exposure to warming (4°C increase) and the pesticide chlorpyrifos on life history traits of the vector mosquito Culex pipiens. Parental exposure to a single stressor, either warming or the pesticide, had negative...

Data from: Environmental DNA from seawater samples correlate with trawl catches of subarctic, deepwater fishes

Philip Francis Thomsen, Peter Rask Møller, Eva Egelyng Sigsgaard, Steen Wilhelm Knudsen, Ole Ankjær Jørgensen & Eske Willerslev
Remote polar and deepwater fish faunas are under pressure from ongoing climate change and increasing fishing effort. However, these fish communities are difficult to monitor for logistic and financial reasons. Currently, monitoring of marine fishes largely relies on invasive techniques such as bottom trawling, and on official reporting of global catches, which can be unreliable. Thus, there is need for alternative and non-invasive techniques for qualitative and quantitative oceanic fish surveys. Here we report environmental...

Data from: Polyphasic taxonomy of Aspergillus section Aspergillus (formerly Eurotium), and its occurrence in indoor environments and food

Amanda Juan Chen, Vit Hubka, Jens C. Frisvad, Cobus M. Visagie, Jos Houbraken, Martin Meijer, Janos Varga, Rasime Demirel, Željko Jurjević, Alena Kubátová, František Sklenář, Y. G. Zhou & Robert A. Samson
Aspergillus section Aspergillus (formerly the genus Eurotium) includes xerophilic species with uniseriate conidiophores, globose to subglobose vesicles, green conidia and yellow, thin walled eurotium-like ascomata with hyaline, lenticular ascospores. In the present study, a polyphasic approach using morphological characters, extrolites, physiological characters and phylogeny was applied to investigate the taxonomy of this section. Over 500 strains from various culture collections and new isolates obtained from indoor environments and a wide range of substrates all over...

Data from: Ocean warming expands habitat of a rich natural resource and benefits a national economy

Teunis Jansen, Søren Post, Trond Kristiansen, Guðmundur J. Óskarsson, Jesper Boje, Brian R. MacKenzie, Mala Broberg & Helle Siegstad
Geographic redistribution of living natural resources changes access and thereby harvesting opportunities between countries. Internationally shared fish resources can be sensitive to shifts in the marine environment and this may have great impact on the economies of countries and regions that rely most heavily on fisheries to provide employment and food supply. Here we present a climate change-related biotic expansion of a rich natural resource with substantial economic consequences, namely the appearance of northeast Atlantic...

Data from: Bioenergetics modeling of the annual consumption of zooplankton by pelagic fish feeding in the Northeast Atlantic

Eneko Bachiller, Kjell Rong Utne, Teunis Jansen & Geir Huse
The present study uses bioenergetics modeling to estimate the annual consumption of the main zooplankton groups by some of the most commercially important planktivorous fish stocks in the Northeast Atlantic, namely Norwegian spring-spawning (NSS) herring (Clupea harengus), blue whiting (Micromesistius poutassou) and NEA mackerel (Scomber scombrus). The data was obtained from scientific surveys in the main feeding area (Norwegian Sea) in the period 2005-2010. By incorporating novel information about ambient temperature, seasonal growth and changes...

Data from: Imprints from genetic drift and mutation imply relative divergence times across marine transition zones in a pan-European small pelagic fish (Sprattus sprattus)

Morten T. Limborg, Reinhold Hanel, Paul V. Debes, Anna-Karin Ring, Costas S. Tsigenopoulos, Dorte Bekkevold & Carl Andre
Geographic distributions of most temperate marine fishes are affected by post-glacial recolonisation events which have left complex genetic imprints on populations of marine species. This study investigated population structure and demographic history of European sprat (Sprattus sprattus L.) by combining inference from both mtDNA and microsatellite genetic markers throughout the species distribution. We compared effects from genetic drift and mutation for both genetic markers in shaping genetic differentiation across four transition zones. Microsatellite markers revealed...

Data from: Catastrophic dynamics limit Atlantic cod recovery

Camilla Sguotti, Saskia Otto, Romain Frelat, Tom Langbehn, Marie Plambech Ryberg, Martin Lindegren, Joel Durant, Nils Stenseth & Christian Möllmann
Collapses and regime changes are pervasive in complex systems (such as marine ecosystems) governed by multiple stressors. The demise of Atlantic cod (Gadus morhua) stocks constitutes a text book example of the consequences of overexploiting marine living resources, yet the drivers of these nearly synchronous collapses are still debated. Moreover, it is still unclear why rebuilding of collapsed fish stocks such as cod is often slow or absent. Here we apply the stochastic cusp model,...

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