39 Works

Drivers of soil microbial community assembly during recovery from selective logging and clear cutting

Jie Chen, Robin L. Chazdon, Nathan Swenson, Han Xu & Tushou Luo
Despite important progress in understanding the impacts of forest clearing and logging on aboveground communities, how these disturbances affect soil microbial β-diversity and the ecological processes driving microbial assemblages are poorly understood. Further, whether and how the microbial shifts affect vegetation composition and diversity during recovery of post-logged forests remain elusive. 2. Using a spatial grid experiment design in a primary tropical forest intermixed with post-logged patches naturally recovered for half century in Hainan Island,...

Repeated genetic and adaptive phenotypic divergence across tidal elevation in a foundation plant species

Robyn Zerebecki, Erik E Sotka, Torrance C Hanley, Katherine L. Bell, Catherine Gehring, Chris C. Nice, Christina L. Richards & A Randall Hughes
Microgeographic genetic divergence can create fine-scale trait variation. When such divergence occurs within foundation species, then it might impact community structure and ecosystem function, and cause other cascading ecological effects. We tested for parallel microgeographic trait and genetic divergence in Spartina alterniflora , a foundation species that dominates salt marshes of the US Atlantic and Gulf coasts. Spartina is characterized by tall-form (1-2m) plants at lower tidal elevations and short-form (<0.5m) plants at higher tidal...

Data from: Crop pests and predators exhibit inconsistent responses to surrounding landscape composition

Daniel S. Karp, Rebecca Chaplin-Kramer, Timothy D. Meehan, Emily A. Martin, Fabrice DeClerck, Heather Grab, Claudio Gratton, Lauren Hunt, Ashley E. Larsen, Alejandra Martínez-Salinas, Megan E. O’Rourke, Adrien Rusch, Katja Poveda, Mattias Jonsson, Jay A. Rosenheim, Nancy A. Schellhorn, Teja Tscharntke, Stephen D. Wratten, Wei Zhang, Aaron L. Iverson, Lynn S. Adler, Matthias Albrecht, Audrey Alignier, Gina M. Angelella, Muhammad Zubair Anjum … & Yi Zou
The idea that noncrop habitat enhances pest control and represents a win–win opportunity to conserve biodiversity and bolster yields has emerged as an agroecological paradigm. However, while noncrop habitat in landscapes surrounding farms sometimes benefits pest predators, natural enemy responses remain heterogeneous across studies and effects on pests are inconclusive. The observed heterogeneity in species responses to noncrop habitat may be biological in origin or could result from variation in how habitat and biocontrol are...

Global human influence maps reveal clear opportunities in conserving Earth’s remaining intact terrestrial ecosystems

Jason Riggio, Jonathan E. M. Baillie, Steven Brumby, Erle Ellis, Christina M. Kennedy, James R. Oakleaf, Alex Tait, Therese Tepe, David M. Theobald, Oscar Venter, James E.M. Watson & Andrew P. Jacobson
Leading up to the 2020 Convention on Biological Diversity there is momentum around setting bold conservation targets. Yet it remains unclear how much of Earth’s land area remains without significant human influence and where this land is located. We compare four recent global maps of human influences across Earth’s land, Anthromes, Global Human Modification, Human Footprint, and Low Impact Areas, to answer these questions. Despite using various methodologies and data, these different spatial assessments independently...

Long-term shifts in the functional composition and diversity of a tropical dry forest: a 30-yr study

Nathan Swenson, Catherine Hulshof, Masatoshi Katabuchi & Brian Enquist
Over the past three decades there has been a concerted effort to study the long-term dynamics of tropical forests throughout the world. Data regarding temporal trends in species diversity, species composition and species-specific demographic rates have now been amassed. Such data can be utilized to test predictions regarding the roles the environment and demographic stochasticity play in driving forest dynamics. These analyses could be further refined by quantifying the temporal trends in the functional compostion...

Orthostatic hypotension, dizziness, neurology outcomes, and death in older adults, supplement methods & tables, STROND checklist

Stephen Juraschek, , Oscar L. Lopez, John S Gottdiener, Lewis A Lipsitz, Lewis H. Kuller & Kenneth J Mukamal
Objective To test the hypothesis that orthostatic hypotension (OH) might cause cerebral hypoperfusion and injury, we examined the longitudinal relationship between orthostatic hypotension (OH) or orthostatic symptoms and incident neurologic outcomes in a community population of older adults. Methods Cardiovascular Health Study (CHS) participants (≥65yrs) without dementia or stroke had blood pressure (BP) measured after lying 20-minutes and after standing 3-minutes. Participants reported dizziness immediately upon standing and any dizziness in the past 2wks. OH...

Facemasks: Perceptions and use in an ED population during COVID-19

Vidya Eswaran, Anna Marie Chang, R Gentry Wilkerson, Kelli O'Laughlin, Brian Chinnock, Stephanie Eucker, Brigitte Baumann, Nancy Anaya, Daniel Miller, Adrianne Haggins, Jesus Torres, Erik Anderson, Stephen Lim, Martina Caldwell, Ali Raja & Robert Rodriguez
Study Objective: Facemask use is associated with reduced transmission of SARS-CoV-2. Most surveys assessing perceptions and practices of mask use miss the most vulnerable racial, ethnic, and socio-economic populations. These same populations have suffered disproportionate impacts from the pandemic. The purpose of this study was to assess beliefs, access, and practices of mask wearing across 15 urban emergency department (ED) populations. Methods: This was a secondary analysis of a cross-sectional study of ED patients from...

Hawaiian forest bird foraging height

Erin Wilson Rankin, Jessie Knowlton, Daniel Gruner, David Flaspohler, Christian Giardina, Devin Leopold, Anna Buckhardt, William Pitt & Tadashi Fukami
Data relevant to study on the foraging height of Hawaiian forest birds collected in kipuka along the Saddle Road, Upper Waiakea Forest Reserve.

Ecological and behavioral mechanisms of density-dependent habitat expansion in a recovering African ungulate population

Justine A. Becker, Matthew Hutchinson, Arjun Potter, Shinkyu Park, Jennifer Guyton, Kyler Abernathy, Victor Americo, Ana Gledis Da Conceiçāo, Tyler Kartzinel, Luca Kuziel, Naomi Leonard, Eli Lorenzi, Nuno Martins, Johan Pansu, William Scott, Maria Stahl, Kai Torrens, Marc Stalmans, Ryan Long & Robert Pringle
Major disturbances can temporarily remove factors that otherwise constrain population abundance and distribution. During such windows of relaxed top-down and/or bottom-up control, ungulate populations can grow rapidly, eventually leading to resource depletion and density-dependent expansion into less-preferred habitats. Although many studies have explored the demographic outcomes and ecological impacts of these processes, fewer have examined the individual-level mechanisms by which they occur. We investigated these mechanisms in Gorongosa National Park, where the Mozambican Civil War...

Experimental evidence for the recovery of mercury-contaminated fish populations

Lee Hrenchuk, Paul Blanchfield, John Rudd, Marc Amyot, Christopher Babiarz, Ken Beaty, Drew Bodaly, Brian Branfireun, Cynthia Gilmour, Jennifer Graydon, Britt Hall, Reed Harris, Andrew Heyes, Holger Hintelmann, James Hurley, Carol Kelly, David Krabbenhoft, Steve Lindberg, Robert Mason, Michael Paterson, Cheryl Podemski, Ken Sandilands, George Southworth, Vincent St. Louis, Lori Tate … & Michael Tate
Anthropogenic releases of mercury (Hg) are a human health issue because the potent toxicant methylmercury (MeHg), formed primarily by microbial methylation of inorganic Hg in aquatic ecosystems, bioaccumulates to high concentrations in fish consumed by humans. Predicting the efficacy of Hg pollution controls on fish MeHg concentrations is complex because many factors influence the production and bioaccumulation of MeHg. Here we conducted a 15-year whole-ecosystem, single-factor experiment to determine the magnitude and timing of reductions...

Data from: The prevalence of MS in the United States: a population-based estimate using health claims data

Mitchell T. Wallin, William J. Culpepper, Jonathan D. Campbell, Lorene M. Nelson, Annette Langer-Gould, Ruth Ann Marrie, Gary R. Cutter, Wendy E. Kaye, Laurie Wagner, Helen Tremlett, Stephen L. Buka, Piyameth Dilokthornsakul, Barbara Topol, Lie H. Chen & Nicholas G. LaRocca
Objective: To generate a national multiple sclerosis (MS) prevalence estimate for the United States by applying a validated algorithm to multiple administrative health claims (AHC) datasets. Methods: A validated algorithm was applied to private, military, and public AHC datasets to identify adult cases of MS between 2008 and 2010. In each dataset, we determined the 3-year cumulative prevalence overall and stratified by age, sex, and census region. We applied insurance-specific and stratum-specific estimates to the...

Elemental cycling in recently deglaciated landscapes, Glacier Bay National Park, Alaska

E.T. Malone, B.W. Abbott, M.J. Klaar, C. Kidd, M. Sébilo, A. Milner & G. Pinay
This data set includes soil chemical, physical and microbial properties collected across a two-century glacial chronosequence across six streams in Glacier Bay, Southeast Alaska, U.S.A. We measured soil potential nitrification, denitrification, as well as stable isotopes (delta-15N and delta-13C) of leaves and soil to establish how physical and biological changes associated with ecosystem development interact to determine rates of carbon (C) and nitrogen (N) turnover. Secondly, how these interactions were reflected in the isotopic signature...

Data from: Sibling rivalry: males with more brothers develop larger testes

Kristin Hook, Heidi Fisher, W. David Weber & Hopi Hoekstra
When females mate with multiple partners in a reproductive cycle, the relative number of competing sperm from rival males is often the most critical factor in determining paternity. Gamete production is directly related to testis size in most species, and is associated with both mating behavior and perceived risk of competition. Deer mice, Peromyscus maniculatus, are naturally promiscuous and males invest significantly more in sperm production than males of P. polionotus, their monogamous sister‐species. Here,...

Cortical encoding of melodic expectations in human temporal cortex

Giovanni Di Liberto, Claire Pelofi, Roberta Bianco, Prachi Patel, Ashesh D Mehta, Jose L Herrero, Alain De Cheveigné, Shihab A Shamme & Nima Mesgarani
Humans engagement in music rests on underlying elements such as the listeners’ cultural background and interest in music. These factors modulate how listeners anticipate musical events, a process inducing instantaneous neural responses as the music confronts these expectations. Measuring such neural correlates would represent a direct window into high-level brain processing. Here we recorded cortical signals as participants listened to Bach melodies. We assessed the relative contributions of acoustic versus melodic components of the music...

Data from: A new way to estimate neurologic disease prevalence in the United States

Lorene M. Nelson, Mitchell T. Wallin, Ruth Ann Marrie, W.J. Culpepper, Annette Langer-Gould, Jon Campbell, Stephen Buka, Helen Tremlett, Gary Cutter, Wendy Kaye, Laurie Wagner & Nicholas G. Larocca
Objective: Considerable gaps exist in knowledge regarding the prevalence of neurologic diseases, such as multiple sclerosis (MS), in the United States. Therefore, the MS Prevalence Working Group sought to review and evaluate alternative methods for obtaining a scientifically valid estimate of national MS prevalence in the current health care era. Methods: We carried out a strengths, weaknesses, opportunities, and threats (SWOT) analysis for 3 approaches to estimate MS prevalence: population-based MS registries, national probability health...

Data for: Many-body thermodynamics on quantum computers via partition function zeros

Akhil Francis, Daiwei Zhu, Cinthia Huerta Alderete, Sonika Johri, Xiao Xiao, James K. Freericks, Christopher Monroe, Norbert M. Linke & Alexander F. Kemper
Partition functions are ubiquitous in physics: they are important in determining the thermodynamic properties of many-body systems, and in understanding their phase transitions. As shown by Lee and Yang, analytically continuing the partition function to the complex plane allows us to obtain its zeros and thus the entire function. Moreover, the scaling and nature of these zeros can elucidate phase transitions. Here we show how to find partition function zeros on noisy intermediate-scale trapped ion...

Infection data and spore counts for cross inoculation experiments

Emily Bruns, Janis Antonovics & Michael Hood
Determining the processes that drive the evolution of pathogen host range can inform our understanding of disease dynamics and the potential for host-shifts. In natural populations, patterns of host range could be driven by genetically based differences in pathogen infectivity or ecological differences in host availability. In northwestern Italy, four reproductively isolated lineages of the fungal plant-pathogen Microbotryum have been shown to co-occur on several species in the genus Dianthus. We carried out cross-inoculation experiments...

Data for: Successful management of invasive rats across a fragmented landscape

Erin Rankin, Sarah Barney, Devin Leopold, Kainana Francisco, David Flaspohler, Tad Fukami, Christian Giardina, Daniel Gruner, Jessie Knowlton & William Pitt
This dataset is from the manuscript "Successful management of invasive rats across a fragmented landscape" and provides the details on snap trap and tracking card data in a broadscale rat removal effort 2011-2015 in the Upper Waiakea Forest Reserve on the Island of Hawai‘i. It describes the successful trapping efforts as well as long term tracking data, which allow us to describe patterns of habitat use of non-native vertebrate species in these naturally fragmented forests...

Dock‐based and dockless bikesharing systems: analysis of equitable access for disadvantaged communities

Xiaodong Qian, Miguel Jaller, Debbie Niemeier & Miao Hu
Dockless bikeshare systems show potential for replacing traditional dock-based systems, primarily by offering greater flexibility for bike returns. However, many cities in the US currently regulate the maximum number of bikes a dockless system can deploy due to bicycle management issues. Despite inventory management challenges, dockless systems offer two main advantages over dock-based systems: a lower (sometimes zero) membership fee, and being free-range (or, at least free-range within designated service areas). Moreover, these two advantages...

Data from: Validation of an algorithm for identifying MS cases in administrative health claims datasets

William J. Culpepper, Ruth Anne Marrie, Annette Langer-Gould, Mitchell T. Wallin, Jonathan D. Campbell, Lorene M. Nelson, Wendy E. Kaye, Laurie Wagner, Helen Tremlett, Lie H. Chen, Stella Leung, Charity Evans, Shenzhen Yao & Nicholas G. LaRocca
Objective: To develop a valid algorithm for identifying multiple sclerosis (MS) cases in administrative health claims (AHC) datasets. Methods: We used 4 AHC datasets from the Veterans Administration (VA), Kaiser Permanente Southern California (KPSC), Manitoba (Canada), and Saskatchewan (Canada). In the VA, KPSC, and Manitoba, we tested the performance of candidate algorithms based on inpatient, outpatient, and disease-modifying therapy (DMT) claims compared to medical records review using sensitivity, specificity, positive and negative predictive values, and...

Data from: Physiological responses to elevated temperature across the geographic range of a terrestrial salamander

Alexander J. Novarro, Caitlin R. Gabor, Cory B. Goff, Tori D. Mezebish, Lily M. Thompson & Kristine L. Grayson
Widespread species often possess physiological mechanisms for coping with thermal heterogeneity, and uncovering these mechanisms provides insight into species responses to climate change. The emergence of non-invasive corticosterone (CORT) assays allows us to rapidly assess physiological responses to environmental change on a large scale. We lack, however, a basic understanding of how temperature affects CORT, and whether temperature and CORT interactively affect performance. Here, we examine the effects of elevated temperature on CORT and whole-organism...

Traits mediate a tradeoff in seedling growth response to light and conspecific density in a diverse subtropical forest

Xiaoyang Song, Jie Yang, Min Cao, Luxiang Lin, Zhenhua Sun, Handong Wen & Nathan Swenson
Understanding tree species responses to biotic and abiotic factors is fundamental for stronger predictions of community assembly and dynamics. However, several challenges remain. These include a failure to investigate whether there is evidence for key hypothesized life-history tradeoffs and to link these tradeoffs to functional traits. In this study, we seek to explicitly address the above outstanding challenges by constructing models for individual seedling growth in response to abiotic and biotic factors using three years...

Data from: Intra-specific variation in tree growth responses to neighborhood composition and seasonal drought in a tropical forest

Jie Yang, Xiaoyang Song, Jenny Zambrano, Yuxin Chen, Min Cao, Xiaobao Deng, Wenfu Zhang, Xiaofei Yang, Guocheng Zhang, Yong Tang & Nathan Swenson
1. Functional traits are expected to provide insights into the abiotic and biotic drivers of plant demography. However, successfully linking traits to plant demographic performance likely requires the consideration of important contextual and individual-level information that is often ignored in trait-based ecology. 2. Here, we modeled 8 years of growth from 1,138 individual trees from 36 tropical rain forest species. We compared models of tree growth parameterized using individual-level versus species mean trait data. We...

Mutations in a novel cadherin gene associated with Bt resistance in Helicoverpa zea

Megan Fritz
Transgenic corn and cotton produce crystalline (Cry) proteins derived from the soil bacterium Bacillus thuringiensis (Bt) that are toxic to lepidopteran larvae. Helicoverpa zea, a key pest of corn and cotton in the U.S., has evolved widespread resistance to these proteins produced in Bt corn and cotton. While the genomic targets of Cry selection and the mutations that produce resistant phenotypes are known in other lepidopteran species, little is known about how selection by Cry...

High resource overlap and small dietary differences are widespread in food-limited warbler communities

Cody Kent, Kyu Huh, Sarah Hunter, Kathryn Judson, Luke Powell & Thomas Sherry
Although both interspecific competition and coexistence mechanisms are central to ecological and evolutionary theory, past empirical studies have generally focused on simple (two-species) communities over short time periods. Experimental tests of these species interactions are challenging in complex study systems. Moreover, a number of studies of ‘imperfect generalists’, consistent with Liem’s Paradox, raise questions about the ability of evolved species differences to effectively partition niche space when resources vary considerably across the annual cycle. Here...

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