56 Works

Evidence for synergistic cumulative impacts of marking and hunting in a wildlife species.

Frédéric LeTourneux, Gilles Gauthier, Roger Pradel, Josée Lefebvre & Pierre Legagneux
Non-additive effects from multiple interacting stressors can have unpredictable outcomes on wildlife. Stressors that initially have negligible impacts may become significant if they act in synergy with novel stressors. Wildlife markers can be a source of physiological stress for animals and are ubiquitous in ecological studies. Their potential impacts on vital rates may vary over time, particularly when changing environments impose new stressors. In this study, we evaluated the temporal changes in the combined impact...

Genome-scale phylogeography resolves the native population structure of the Asian longhorned beetle, Anoplophora glabripennis (Motschulsky)

Mingming Cui, Yunke Wu, Marion Javal, Isabelle Giguère, Géraldine Roux, Jose Andres, Melody Keena, Juan Shi, Baode Wang, Evan Braswell, Scott Pfister, Richard Hamelin, Amanda Roe & Ilga Porth
Human assisted movement has allowed the Asian longhorned beetle (ALB, Anoplophora glabripennis (Motschulsky)) to spread beyond its native range and become a globally regulated invasive pest. Within its native range of China and the Korean peninsula, human-mediated dispersal has also caused cryptic translocation of insects, resulting in population structure complexity. Previous studies used genetic methods to detangle this complexity but were unable to clearly delimit native populations which is needed to develop downstream biosurveillance tools....

Implication of the myo-inositol pathway in behavioral alterations of infected threespine sticklebacks

Verônica Angélica Alves & Nadia Aubin-Horth
Threespine stickleback (Gasterosteus aculeatus) infected with the tapeworm Schistocephalus solidus display impairments in their anti-predator responses. They also have increased expression of the gene encoding the IMPase 1 enzyme in their brains, which is part of a key step in myo-inositol synthesis. IMPase 1 and myo-inositol levels are the targets of lithium treatment in patients with bipolar disorder. Although promising candidates, we do not know if IMPase 1 and myo-inositol are directly implicated in the...

Additional file 14 of Methylome and transcriptome data integration reveals potential roles of DNA methylation and candidate biomarkers of cow Streptococcus uberis subclinical mastitis

Mengqi Wang, Nathalie Bissonnette, Mario Laterrière, Pier-Luc Dudemaine, David Gagné, Jean-Philippe Roy, Xin Zhao, Marc-André Sirard & Eveline M. Ibeagha-Awemu
Additional file 14: Table S9. The list of differentially expressed (DE) genes and their functional enrichment.

Additional file 7 of Methylome and transcriptome data integration reveals potential roles of DNA methylation and candidate biomarkers of cow Streptococcus uberis subclinical mastitis

Mengqi Wang, Nathalie Bissonnette, Mario Laterrière, Pier-Luc Dudemaine, David Gagné, Jean-Philippe Roy, Xin Zhao, Marc-André Sirard & Eveline M. Ibeagha-Awemu
Additional file 7: Table S2. Read mapping statistics of whole-genome bisulfite sequencing data and RNA sequencing data of six cows.

Additional file 13 of Methylome and transcriptome data integration reveals potential roles of DNA methylation and candidate biomarkers of cow Streptococcus uberis subclinical mastitis

Mengqi Wang, Nathalie Bissonnette, Mario Laterrière, Pier-Luc Dudemaine, David Gagné, Jean-Philippe Roy, Xin Zhao, Marc-André Sirard & Eveline M. Ibeagha-Awemu
Additional file 13: Table S8. The list of differentially methylated haplotype blocks (dMHBs) and functional enrichment for hyper dMHBs.

Additional file 2 of Design and validation of a 63K genome-wide SNP-genotyping platform for caribou/reindeer (Rangifer tarandus)

Alexandra Carrier, Julien Prunier, William Poisson, Mallorie Trottier-Lavoie, Isabelle Gilbert, Maria Cavedon, Kisun Pokharel, Juha Kantanen, Marco Musiani, Steeve D. Côté, Vicky Albert, Joëlle Taillon, Vincent Bourret, Arnaud Droit & Claude Robert
Additional file 2: List of SNPs positioned on the X chromosome

Additional file 17 of Methylome and transcriptome data integration reveals potential roles of DNA methylation and candidate biomarkers of cow Streptococcus uberis subclinical mastitis

Mengqi Wang, Nathalie Bissonnette, Mario Laterrière, Pier-Luc Dudemaine, David Gagné, Jean-Philippe Roy, Xin Zhao, Marc-André Sirard & Eveline M. Ibeagha-Awemu
Additional file 17: Table S12. The cluster of functional annotations enriched by differential methylated and expressed genes (MetGDE genes).

Additional file 7 of Methylome and transcriptome data integration reveals potential roles of DNA methylation and candidate biomarkers of cow Streptococcus uberis subclinical mastitis

Mengqi Wang, Nathalie Bissonnette, Mario Laterrière, Pier-Luc Dudemaine, David Gagné, Jean-Philippe Roy, Xin Zhao, Marc-André Sirard & Eveline M. Ibeagha-Awemu
Additional file 7: Table S2. Read mapping statistics of whole-genome bisulfite sequencing data and RNA sequencing data of six cows.

Additional file 10 of Methylome and transcriptome data integration reveals potential roles of DNA methylation and candidate biomarkers of cow Streptococcus uberis subclinical mastitis

Mengqi Wang, Nathalie Bissonnette, Mario Laterrière, Pier-Luc Dudemaine, David Gagné, Jean-Philippe Roy, Xin Zhao, Marc-André Sirard & Eveline M. Ibeagha-Awemu
Additional file 10: Table S5. The list of DMRs and annotation.

Additional file 11 of Methylome and transcriptome data integration reveals potential roles of DNA methylation and candidate biomarkers of cow Streptococcus uberis subclinical mastitis

Mengqi Wang, Nathalie Bissonnette, Mario Laterrière, Pier-Luc Dudemaine, David Gagné, Jean-Philippe Roy, Xin Zhao, Marc-André Sirard & Eveline M. Ibeagha-Awemu
Additional file 11: Table S6. The list of genes harboring DMCs or overlapping with DMRs.

Additional file 13 of Methylome and transcriptome data integration reveals potential roles of DNA methylation and candidate biomarkers of cow Streptococcus uberis subclinical mastitis

Mengqi Wang, Nathalie Bissonnette, Mario Laterrière, Pier-Luc Dudemaine, David Gagné, Jean-Philippe Roy, Xin Zhao, Marc-André Sirard & Eveline M. Ibeagha-Awemu
Additional file 13: Table S8. The list of differentially methylated haplotype blocks (dMHBs) and functional enrichment for hyper dMHBs.

Data from: Large herbivores trigger spatiotemporal changes in forest plant diversity

Julien Beguin, Steeve D. Côté & Mark Vellend
Large herbivores can exert top-down control on terrestrial plant communities, but the magnitude, direction, and scale-dependency of their impacts remain equivocal, especially in temperate and boreal forests, where multiple disturbances often interact. Using a unique, long-term and replicated landscape experiment, we assessed the influence of a high density of white-tailed deer (Odocoileus virginianus) on the spatiotemporal dynamics of diversity, composition, and successional trajectories of understorey plant assemblages in recently logged boreal forests. This experiment provided...

Effects of temperature on mating behaviour and mating success: a meta-analysis

Natalie Pilakouta & Anais Baillet
In light of global climate change, there is a pressing need to understand how populations will respond to rising temperatures. Understanding the effects of temperature changes on mating behaviour is particularly important, given its implications for population viability. To this end, we performed a meta-analysis of 53 studies to examine how temperature changes influence mating latency, choosiness, and mating success. We hypothesized that if higher temperatures make mate searching and mate assessment more costly due...

Additional file 2 of Design and validation of a 63K genome-wide SNP-genotyping platform for caribou/reindeer (Rangifer tarandus)

Alexandra Carrier, Julien Prunier, William Poisson, Mallorie Trottier-Lavoie, Isabelle Gilbert, Maria Cavedon, Kisun Pokharel, Juha Kantanen, Marco Musiani, Steeve D. Côté, Vicky Albert, Joëlle Taillon, Vincent Bourret, Arnaud Droit & Claude Robert
Additional file 2: List of SNPs positioned on the X chromosome

Additional file 3 of Design and validation of a 63K genome-wide SNP-genotyping platform for caribou/reindeer (Rangifer tarandus)

Alexandra Carrier, Julien Prunier, William Poisson, Mallorie Trottier-Lavoie, Isabelle Gilbert, Maria Cavedon, Kisun Pokharel, Juha Kantanen, Marco Musiani, Steeve D. Côté, Vicky Albert, Joëlle Taillon, Vincent Bourret, Arnaud Droit & Claude Robert
Additional file 3: List of IDs of faulty probes that may yet be found in the resulting vcf

Genome-wide methylation in the panmictic European eel (Anguilla anguilla)

Shenglin Liu, Aja Noersgaard Buur Tengstedt, Magnus W. Jacobsen, Jose Martin Pujolar, Bjarni Jónsson, Javier Lobón-Cervià, Louis Bernatchez & Michael M. Hansen
The role of methylation in adaptive, developmental and speciation processes has attracted considerable interest, but interpretation of results is complicated by diffuse boundaries between genetic and non-genetic variation. We studied whole genome genetic and methylation variation in the European eel, distributed from subarctic to subtropical environments, but with panmixia precluding genetically based local adaptation beyond single-generation responses. Overall methylation was 70.9%, with hypomethylation predominantly found in promoters and first exons. Redundancy analyses involving juvenile glass...

Psychometric properties of the 37-item Functional Assessment of Cancer Therapy-Cognitive Function (FACT-Cog) scale Supplementary Table 1

Aline Hajj, Pascale Salameh, Rita Khoury, Roula Hachem, Hala Sacre, Georges Chahine, Joseph Kattan & Lydia Rabbaa Khabbaz
Psychometric properties of the 37-item Functional Assessment of Cancer Therapy-Cognitive Function (FACT-Cog) scale Supplementary Table 1

Multibeam bathymetry from an Autonomous Underwater Vehicule (AUV) - Pointe-des-Monts (2019-2020)

Patrick Lajeunesse & Alexandre Normandeau
Using an autonomous underwater vehicle (HUGIN) equipped with an EM2040 multibeam echosounder, submarine canyons and channels offshore Pointe-des-Monts were surveyed in 2019 and 2020. This survey aimed at identifying the fine-scale morphological variability of turbidity current bedforms on the modern seafloor. This project was funded by Réseau Québec-Maritime.

Plant litter chemistry controls coarse-textured soil carbon dynamics

Raoul Huys, Vincent Poirier, Malo Bourget, Catherine Roumet, Stephan Hattenschwiler, Nathalie Fromin, Alison Munson & Grégoire Freschet
1. As soils store more carbon (C) than the Earth’s atmosphere and terrestrial biomass together, the balance between soil C uptake in the form of soil organic matter and release as CO2 upon its decomposition is a critical determinant in the global C cycle regulating our planet’s climate. Although plant litter is the predominant source of C fueling both soil C build-up and losses, the issue of how litter chemistry influences this balance remains unresolved....

Additional file 1 of Design and validation of a 63K genome-wide SNP-genotyping platform for caribou/reindeer (Rangifer tarandus)

Alexandra Carrier, Julien Prunier, William Poisson, Mallorie Trottier-Lavoie, Isabelle Gilbert, Maria Cavedon, Kisun Pokharel, Juha Kantanen, Marco Musiani, Steeve D. Côté, Vicky Albert, Joëlle Taillon, Vincent Bourret, Arnaud Droit & Claude Robert
Additional file 1: Details for each step of the stacks workflow

Additional file 3 of Design and validation of a 63K genome-wide SNP-genotyping platform for caribou/reindeer (Rangifer tarandus)

Alexandra Carrier, Julien Prunier, William Poisson, Mallorie Trottier-Lavoie, Isabelle Gilbert, Maria Cavedon, Kisun Pokharel, Juha Kantanen, Marco Musiani, Steeve D. Côté, Vicky Albert, Joëlle Taillon, Vincent Bourret, Arnaud Droit & Claude Robert
Additional file 3: List of IDs of faulty probes that may yet be found in the resulting vcf

Additional file 17 of Methylome and transcriptome data integration reveals potential roles of DNA methylation and candidate biomarkers of cow Streptococcus uberis subclinical mastitis

Mengqi Wang, Nathalie Bissonnette, Mario Laterrière, Pier-Luc Dudemaine, David Gagné, Jean-Philippe Roy, Xin Zhao, Marc-André Sirard & Eveline M. Ibeagha-Awemu
Additional file 17: Table S12. The cluster of functional annotations enriched by differential methylated and expressed genes (MetGDE genes).

Additional file 16 of Methylome and transcriptome data integration reveals potential roles of DNA methylation and candidate biomarkers of cow Streptococcus uberis subclinical mastitis

Mengqi Wang, Nathalie Bissonnette, Mario Laterrière, Pier-Luc Dudemaine, David Gagné, Jean-Philippe Roy, Xin Zhao, Marc-André Sirard & Eveline M. Ibeagha-Awemu
Additional file 16: Table S11. The results of functional enrichment differentially methylated and expressed genes (MetGDE genes).

Additional file 8 of Methylome and transcriptome data integration reveals potential roles of DNA methylation and candidate biomarkers of cow Streptococcus uberis subclinical mastitis

Mengqi Wang, Nathalie Bissonnette, Mario Laterrière, Pier-Luc Dudemaine, David Gagné, Jean-Philippe Roy, Xin Zhao, Marc-André Sirard & Eveline M. Ibeagha-Awemu
Additional file 8: Table S3. The list of differentially methylated cytosines (DMCs) in the context of CpG, CHG and CHH.

Registration Year

  • 2022
    56

Resource Types

  • Dataset
    56

Affiliations

  • Université Laval
    56
  • University of Montreal
    27
  • McGill University
    27
  • Third Hospital of Hebei Medical University
    26
  • Zhejiang University
    26
  • Institute of Hydrobiology
    26
  • Zunyi Medical University
    26
  • Chinese Academy of Inspection and Quarantine
    26
  • Capital Medical University
    26
  • Nankai University
    26