35 Works

Additional file 1 of Genome-wide association mapping reveals genes underlying population-level metabolome diversity in a fungal crop pathogen

Nikhil Kumar Singh, Sabina Moser Tralamazza, Leen Nanchira Abraham, Gaétan Glauser & Daniel Croll
Additional file 1: Table S1. Zymoseptoria tritici field collection information including collection time point (C1-3), cultivar of origin, field plot. Table S2. Relative intensities of 2633 metabolite markers. The isolate name corresponding to sample identifiers are detailed in Table S1. Table S3. List of metabolite-GWAS top significant SNPs and distance to closest gene. Table S4. Gene function enrichment based on m-GWAS closest genes to top significant SNPs.

Phenology of Lupinus polyphyllus from Central to Northern Europe

Kristin Ludewig, Yves P. Klinger, Tobias W. Donath, Lukas Bärmann, Carsten Eichberg, Jacob Gadegaad Thomsen, Eugen Görzen, Wiebke Hansen, Eliza M. Hasselquist, Thierry Helminger, Frida Kaiskog, Emma Karlsson, Torsten Kirchner, Carola Knudsen, Nikola Lenzewski, Sigrid Lindmo, Per Milberg, Daniel Pruchniewicz, Elisabeth Richter, Tobias M. Sandner, Judith M. Sarneel, Ralf Schmiede, Simone Schneider, Kathrin Schwarz, Åsa Tjäder … & Rolf Lutz Eckstein
Plant phenology, i. e. the timing of life cycle events, is related to individual fitness and species distribution ranges. Among the environmental factors, phenology is mostly driven by temperature and day length. Rapid adaptation of their phenology may also be important for the success of invasive plant species. Our main aim was to understand how the performance, timing, and temperature dependence of the phenology of the invasive legume Lupinus polyphyllus varies with latitude. L. polyphyllus...

Bird migration in space and time: chain migration by Eurasian curlew (Numenius arquata arquata) along the East Atlantic Flyway

Rebecca Pederson, Pierrick Bocher, Stefan Garthe, Jérôme Fort, Moritz Mercker, Verena Auernhammer, Martin Boschert, Philippe Delaporte, Jaanus Elts, Wolfgang Fiedler, Michał Korniluk, Dominik Krupiński, Riho Marja, Pierre Rousseau, Lukas Thiess & Philipp Schwemmer
Migration patterns in birds vary in space and time. Spatial patterns include chain, leap frog, and telescopic migration. Temporal patterns such as migration duration, number and duration of stopovers may vary according to breeding latitude, sex and season. This study aimed to verify these patterns in a long-distance migrant, the Eurasian curlew (Numenius arquata arquata), and to provide a synopsis of spatio-temporal migration patterns in this species of concern throughout the East Atlantic Flyway. We...

Continuous thermosalinograph oceanography along RV MARIA S. MERIAN cruise MSM98/2

Jens Schneider von Deimling & Michael Schlundt
Underway temperature and salinity data was collected along the cruise track with two autonomous measurement systems. Usually, the systems are changed after 6 hours. While temperature is taken at the water inlet in about 6.5 m depth, salinity is estimated within the interior measurement container from conductivity and interior temperature. Salinity was calibrated independently for both measurement containers (MCs). No correction was done for temperature. For details to all processing steps see Data Processing Report.

ADCP current measurements (75 kHz) during RV MARIA S. MERIAN cruise MSM103

Sebastian Hölz, Robert Kopte & Johanna Klein
Upper-ocean velocities along the cruise track of RV MARIA S. MERIAN cruise MSM103 were continuously collected by a vessel-mounted Teledyne RD Instruments 75 kHz Ocean Surveyor ADCP. The transducer was located at 6.0 m below the water line. The instrument was operated in narrowband mode with 8 m bins and a blanking distance of 8.0 m, while 100 bins were recorded using a pulse of 1.43 s. The ship's velocity was calculated from position fixes...

Continuous thermosalinograph oceanography along RV MARIA S. MERIAN cruise track MSM101

Ralph R Schneider & Michael Schlundt
Underway temperature and salinity data was collected along the cruise track with two autonomous measurement systems. Usually, the systems are changed after 6 hours. While temperature is taken at the water inlet in about 6.5 m depth, salinity is estimated within the interior measurement container from conductivity and interior temperature. Salinity was calibrated independently for both measurement containers (MCs). No correction was done for temperature. For details to all processing steps see Data Processing Report.

Data from: Data-driven bioregionalization: A seascape-scale study of macrobenthic communities in the Eurasian Arctic

Dmitrii Pantiukhin, Dieter Piepenburg, Miriam L. S. Hansen & Casper Kraan
Aim: We conduct the first model-based assessment of the biogeographical subdivision of Eurasian Arctic seas to (1) delineate spatial distribution and boundaries of macrobenthic communities on a seascape level; (2) assess the significance of environmental drivers of macrobenthic community structures; (3) compare our modelling results to historical biogeographical classifications; and (4) couple the model to climate-change scenarios of environmental changes to project potential shifts in the distribution and composition of macrobenthic communities by 2100. Location:...

Phylogenomic testing of root hypotheses - demonstrative datasets - Opisthokonta and Proteobacteria

Fernando Tria, Tal Dagan & Giddy Landan
The determination of the last common ancestor (LCA) of a group of species plays a vital role in evolutionary theory. Traditionally, an LCA is inferred by the rooting of a fully resolved species tree. From a theoretical perspective, however, inference of the LCA amounts to the reconstruction of just one branch - the root branch - of the true species tree, and should therefore be a much easier task than the full resolution of the...

Dataset: Sanctions and international interaction improve cooperation to avert climate change

Gianluca Grimalda, Alexis Belianin, Heike Hennig-Schmidt, Till Requate & Marina Ryzhkova
Imposing sanctions on non-compliant parties to international agreements is advocated as a remedy for international cooperation failure. Nevertheless, sanctions are costly, and rational choice theory predicts their ineffectiveness in improving cooperation. We test sanctions effectiveness experimentally in international collective-risk social dilemmas simulating efforts to avoid catastrophic climate change. We involve individuals from countries where sanctions were shown to be effective (Germany) or ineffective (Russia) in increasing cooperation. Here we show that, while this result still...

ADCP current measurements (75 kHz) during RV SONNE cruise SO285

Tim Rixen, Robert Kopte & Tim Dudeck
Upper-ocean velocities along the cruise track of RV SONNE cruise SO285 were continuously collected by a vessel-mounted Teledyne RD Instruments 75 kHz Ocean Surveyor ADCP. The transducer was located at 6.5 m below the water line. The instrument was operated in broadband mode with 5 m bins and a blanking distance of 8.0 m, while 100 bins were recorded using a pulse of 0.82 s. The ship's velocity was calculated from position fixes obtained by...

ADCP current measurements (38 kHz) during RV MARIA S. MERIAN cruise MSM102

Sebastian Krastel, Robert Kopte, Kai-Frederik Lenz & Rachel Barrett
Upper-ocean velocities along the cruise track of RV MARIA S. MERIAN cruise MSM102 were continuously collected by a vessel-mounted Teledyne RD Instruments 38 kHz Ocean Surveyor ADCP. The transducer was located at 6.0 m below the water line. The instrument was operated in narrowband mode with 32 m bins and a blanking distance of 16 m, while 50 bins were recorded using a pulse of 2.87 s. The ship's velocity was calculated from position fixes...

ADCP current measurements (75 kHz transit dataset) during RV MARIA S. MERIAN cruise MSM105

Volker Mohrholz, Robert Kopte & Toralf Heene
Upper-ocean velocities along the cruise track of RV MARIA S. MERIAN cruise MSM105 were continuously collected by a vessel-mounted Teledyne RD Instruments 75 kHz Ocean Surveyor ADCP. The transducer was located at 6.0 m below the water line. The instrument was operated in broadband mode with 8 m bins and a blanking distance of 8.0 m, while 100 bins were recorded using a pulse of 0.82 s. The ship's velocity was calculated from position fixes...

Curie depth points and Geothermal heat flow estimates from spectral analysis of magnetic data in the Transantarctic Mountains and Wilkes Subglacial Basin region.

Maximilian Lowe, Ben Mather, Chris Green, Tom Jordan, Joerg Ebbing & Robert Larter
We present Curie depth point (CDP) and geothermal heat flow (GHF) estimations based on spectral analysis of magnetic airborne data for the Transantarctic Mountains (TAM) and Wilkes Subglacial Basin area. The Curie depth point is defined as the depth at which the Curie Temperature of 580 degC is reached. The Curie Temperature describes the temperature at which magnetic minerals lose their ability to generate a strong magnetic field. We use exclusively high resolution magnetic airborne...

Activity of forest specialist bats decreases towards wind turbines at forest sites

Julia S. Ellerbrok, Anna Delius, Franziska Peter, Nina Farwig & Christian C. Voigt
Worldwide, wind turbines are increasingly being built at forest sites to meet the goals of national climate strategies. Yet, the impact on forest ecosystems and biodiversity is barely understood. Bats may be heavily affected by wind turbines in forests, because many species depend on forest ecosystems for roosting and hunting and can experience high fatality rates at wind turbines. We performed acoustic surveys in 24 temperate forests in the low mountain ranges of Central Germany...

Additional file 1 of Epigenome-wide analysis of T-cell large granular lymphocytic leukemia identifies BCL11B as a potential biomarker

Patricia Johansson, Teresa Laguna, Julio Ossowski, Vera Pancaldi, Martina Brauser, Ulrich Dührsen, Lara Keuneke, Ana Queiros, Julia Richter, José I. Martín-Subero, Reiner Siebert, Brigitte Schlegelberger, Ralf Küppers, Jan Dürig, Eva M. Murga Penas, Enrique Carillo-de Santa Pau & Anke K. Bergmann
Additional file 1: Table S1. T-LGL patient data. Table S2. Benign samples. Table S3. Sample overview. Table S4. Primer sequences and CpGs used in pyrosequencing. Table S5. CpGs validated by pyrosequencing. Table S6. Pearson correlation of results of bisulfite sequencing and methylation array data. Table S7. Chromatin states—description. Table S8. Taqman probes used in qPCR. Table S9. Differentially methylated probes and genomic features. Table S10. Differentially hypermethylated genes. Table S11. Differentially hypomethylated genes. Table S12....

ADCP current measurements (38 kHz) during RV MARIA S. MERIAN cruise MSM101

Felix Gross, Robert Kopte & Ralph R Schneider
Upper-ocean velocities along the cruise track of RV MARIA S. MERIAN cruise MSM101 were continuously collected by a vessel-mounted Teledyne RD Instruments 38 kHz Ocean Surveyor ADCP. The transducer was located at 6.5 m below the water line. The instrument was operated in narrowband mode with 32 m bins and a blanking distance of 16.0 m, while 50 bins were recorded using a pulse of 2.87 s. The ship's velocity was calculated from position fixes...

Hotspots in the grid: Avian sensitivity and vulnerability to collision risk from energy infrastructure interactions in Europe and North Africa

Jethro George Gauld, João P. Silva, Philip W. Atkinson, Paul Record, Marta Acácio, Volen Arkumarev, Julio Blas, Willem Bouten, Niall Burton, Inês Catry, Jocelyn Champagnon, Elizabeth A. Masden, Gary D. Clewley, Mindaugas Dagys, Olivier Duriez, Klaus‐Michael Exo, Wolfgang Fiedler, Andrea Flack, Guilad Friedemann, Johannes Fritz, Clara García-Ripollés, Stefan Garthe, Dimitri Giunchi, Atanas Grozdanov, Roi Harel … & Victoria Saravia
Wind turbines and power lines can cause bird mortality due to collision or electrocution. The biodiversity impacts of energy infrastructure (EI) can be minimised through effective landscape-scale planning and mitigation. The identification of high-vulnerability areas is urgently needed to assess potential cumulative impacts of EI while supporting the transition to zero-carbon energy. We collected GPS location data from 1,454 birds from 27 species susceptible to collision within Europe and North Africa and identified areas where...

ADCP current measurements (38 kHz) during RV SONNE cruise SO289

Eric Pieter Achterberg, Robert Kopte & C G Galley
Upper-ocean velocities along the cruise track of RV SONNE cruise SO289 were continuously collected by a vessel-mounted Teledyne RD Instruments 38 kHz Ocean Surveyor ADCP. The transducer was located at 6.0 m below the water line. The instrument was operated in narrowband mode with 32 m bins and a blanking distance of 16.0 m, while 50 bins were recorded using a pulse of 2.87 s. The ship's velocity was calculated from position fixes obtained by...

Higher phage virulence accelerates the evolution of host resistance

Carolin Wendling, Janina Lange, Heiko Liesegang, Michael Sieber, Anja Pöhlein, Boyke Bunk, Jelena Rajkov, Olivia Roth & Michael Brockhurst
Pathogens vary strikingly in their virulence and the selection they impose on their hosts. While the evolution of different virulence levels is well studied, the evolution of host resistance in response to different virulence levels is less understood and as of now mainly based on observations and theoretical predictions with few experimental tests. Increased virulence can increase selection for host resistance evolution if resistance costs are outweighed by the benefits of avoiding infection. To test...

Additional file 1 of Genome-wide association mapping reveals genes underlying population-level metabolome diversity in a fungal crop pathogen

Nikhil Kumar Singh, Sabina Moser Tralamazza, Leen Nanchira Abraham, Gaétan Glauser & Daniel Croll
Additional file 1: Table S1. Zymoseptoria tritici field collection information including collection time point (C1-3), cultivar of origin, field plot. Table S2. Relative intensities of 2633 metabolite markers. The isolate name corresponding to sample identifiers are detailed in Table S1. Table S3. List of metabolite-GWAS top significant SNPs and distance to closest gene. Table S4. Gene function enrichment based on m-GWAS closest genes to top significant SNPs.

Additional file 1 of Epigenome-wide analysis of T-cell large granular lymphocytic leukemia identifies BCL11B as a potential biomarker

Patricia Johansson, Teresa Laguna, Julio Ossowski, Vera Pancaldi, Martina Brauser, Ulrich Dührsen, Lara Keuneke, Ana Queiros, Julia Richter, José I. Martín-Subero, Reiner Siebert, Brigitte Schlegelberger, Ralf Küppers, Jan Dürig, Eva M. Murga Penas, Enrique Carillo-de Santa Pau & Anke K. Bergmann
Additional file 1: Table S1. T-LGL patient data. Table S2. Benign samples. Table S3. Sample overview. Table S4. Primer sequences and CpGs used in pyrosequencing. Table S5. CpGs validated by pyrosequencing. Table S6. Pearson correlation of results of bisulfite sequencing and methylation array data. Table S7. Chromatin states—description. Table S8. Taqman probes used in qPCR. Table S9. Differentially methylated probes and genomic features. Table S10. Differentially hypermethylated genes. Table S11. Differentially hypomethylated genes. Table S12....

Additional file 1 of A correlation map of genome-wide DNA methylation patterns between paired human brain and buccal samples

Yasmine Sommerer, Olena Ohlei, Valerija Dobricic, Derek H. Oakley, Tanja Wesse, Sanaz Sedghpour Sabet, Ilja Demuth, Andre Franke, Bradley T. Hyman, Christina M. Lill & Lars Bertram
Additional file 1. Supplementary Tables.

ADCP current measurements (75 kHz) during RV MARIA S. MERIAN cruise MSM102

Sebastian Krastel, Robert Kopte, Kai-Frederik Lenz & Rachel Barrett
Upper-ocean velocities along the cruise track of RV MARIA S. MERIAN cruise MSM102 were continuously collected by a vessel-mounted Teledyne RD Instruments 75 kHz Ocean Surveyor ADCP. The transducer was located at 6.0 m below the water line. The instrument was operated in narrowband mode with 8 m bins and a blanking distance of 8 m, while 100 bins were recorded using a pulse of 1.43 s. The ship's velocity was calculated from position fixes...

ADCP current measurements (38 kHz) during RV METEOR cruise M176/2

Eric Pieter Achterberg, Robert Kopte & C G Galley
Upper-ocean velocities along the cruise track of RV METEOR cruise M176/2 were continuously collected by a vessel-mounted Teledyne RD Instruments 38 kHz Ocean Surveyor ADCP. The transducer was located at 5.0 m below the water line. The instrument was operated in narrowband mode with 32 m bins and a blanking distance of 16.0 m, while 55 bins were recorded using a pulse of 2.90 s. The ship's velocity was calculated from position fixes obtained by...

Environment regimes play an important role in structuring trait- and taxonomy-based temporal beta diversity of riverine diatoms

Naicheng Wu, Yaochun Wang, Yixia Wang, Xiuming Sun, Claas Faber & Nicola Fohrer
This dataset is from the manuscript 'Environment regimes play an important role in structuring trait-and taxonomy-based temporal beta diversity of riverine diatoms' whereby daily riverine diatom data, flow, nutrients and metal ions data were used to examine i) the relative roles of turnover and nestedness components to trait- and taxonomy-based temporal beta diversity of riverine diatoms; ii) whether trait-based temporal beta diversity provides complementary information to taxonomy-based temporal beta diversity; iii) the relative roles of...

Registration Year

  • 2022
    35

Resource Types

  • Dataset
    35

Affiliations

  • Institut für Geowissenschaften, Christian-Albrechts-Universität, Kiel
    17
  • Kiel University
    16
  • GEOMAR - Helmholtz Centre for Ocean Research Kiel
    10
  • University Hospital Schleswig-Holstein
    4
  • University of Oslo
    3
  • Charité - University Medicine Berlin
    2
  • Massachusetts General Hospital
    2
  • Cancer Research Center of Toulouse
    2
  • Hannover Medical School
    2
  • University of Münster
    2