24 Works

Acceleration of electrons by whistler-mode hiss waves at Saturn

Emma E. Woodfield, Sarah A. Glauert, J. Douglas Menietti, Richard B. Horne, Andrew J. Kavanagh & Yuri Y. Shprits
Radiation belts are hazardous regions found around several of the planets in our Solar System. They consist of very hot, electrically charged particles that are trapped in the magnetic field of the planet. At Saturn the most important way to heat these particles has for many years been thought to involve the particles drifting closer towards the planet. This paper builds on previous work on the emerging idea at Saturn that a different way to...

Telecentric bright-field transmitted light microscopic dataset

Ali Ghaznavi, Renata Rychtáriková, Mohammadmehdi Saberioon & Dalibor Štys
Living cell segmentation from bright-field light microscopic images is challenging due to the image complexity and temporal changes in the living cells. Recently developed deep learning (DL)-based methods became popular in medical and microscopic image segmentation tasks due to their success and promising outcomes. The main objective of this paper is to develop a deep learning, UNet-based method to segment the living cells of the HeLa line in bright-field transmitted light microscopy. To find the...

Western Canada Regional Long Period MT Surveys

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Long-period magnetotelluric surveys in Western Canada funded by NSERC and the University of Alberta. Data collection and processing were done by the University of Alberta.

Additional file 4 of MarineMetagenomeDB: a public repository for curated and standardized metadata for marine metagenomes

Muhammad Kabiru Nata’ala, Anderson P. Avila Santos, Jonas Coelho Kasmanas, Alexander Bartholomäus, João Pedro Saraiva, Sandra Godinho Silva, Tina Keller-Costa, Rodrigo Costa, Newton C. M. Gomes, André Carlos Ponce de Leon Ferreira de Carvalho, Peter F. Stadler, Danilo Sipoli Sanches & Ulisses Nunes da Rocha
Additional file 4. Table S4: Marine ‘MarMDB’ attributes groups and their respective values.

Additional file 6 of MarineMetagenomeDB: a public repository for curated and standardized metadata for marine metagenomes

Muhammad Kabiru Nata’ala, Anderson P. Avila Santos, Jonas Coelho Kasmanas, Alexander Bartholomäus, João Pedro Saraiva, Sandra Godinho Silva, Tina Keller-Costa, Rodrigo Costa, Newton C. M. Gomes, André Carlos Ponce de Leon Ferreira de Carvalho, Peter F. Stadler, Danilo Sipoli Sanches & Ulisses Nunes da Rocha
Additional file 6. Table S6: Equivalent and comparable attributes in SRA and MG-RAST.

Additional file 5 of MarineMetagenomeDB: a public repository for curated and standardized metadata for marine metagenomes

Muhammad Kabiru Nata’ala, Anderson P. Avila Santos, Jonas Coelho Kasmanas, Alexander Bartholomäus, João Pedro Saraiva, Sandra Godinho Silva, Tina Keller-Costa, Rodrigo Costa, Newton C. M. Gomes, André Carlos Ponce de Leon Ferreira de Carvalho, Peter F. Stadler, Danilo Sipoli Sanches & Ulisses Nunes da Rocha
Additional file 5. Table S5: Complete list of attributes in MarineMetagenomeDB. The ‘MarMDB attribute category’ column indicates the manually created category of each attribute.

Additional file 3 of MarineMetagenomeDB: a public repository for curated and standardized metadata for marine metagenomes

Muhammad Kabiru Nata’ala, Anderson P. Avila Santos, Jonas Coelho Kasmanas, Alexander Bartholomäus, João Pedro Saraiva, Sandra Godinho Silva, Tina Keller-Costa, Rodrigo Costa, Newton C. M. Gomes, André Carlos Ponce de Leon Ferreira de Carvalho, Peter F. Stadler, Danilo Sipoli Sanches & Ulisses Nunes da Rocha
Additional file 3. Table S3: Attributes chosen to represent different synonyms from SRAdb’s ‘sample_attribute’.

Additional file 5 of MarineMetagenomeDB: a public repository for curated and standardized metadata for marine metagenomes

Muhammad Kabiru Nata’ala, Anderson P. Avila Santos, Jonas Coelho Kasmanas, Alexander Bartholomäus, João Pedro Saraiva, Sandra Godinho Silva, Tina Keller-Costa, Rodrigo Costa, Newton C. M. Gomes, André Carlos Ponce de Leon Ferreira de Carvalho, Peter F. Stadler, Danilo Sipoli Sanches & Ulisses Nunes da Rocha
Additional file 5. Table S5: Complete list of attributes in MarineMetagenomeDB. The ‘MarMDB attribute category’ column indicates the manually created category of each attribute.

Research data_ upload.xlsx

Christof Sager, Kai Mangelsdorf, Alessandro Airo, Dirk Schulze-Makuch & Felix L. Arens
Data for the manuscript entitled: Habitability of Polygonal Soils in the Hyper-arid Atacama Desert after a Simulated Rain Experiment
Authors: Christof Sager, Alessandro Airo, Kai Mangelsdorf, Felix L. Arens, Cornelia Karger, Dirk Schulze-Makuch

Supplementary: Global continental and marine detrital εNd: an updated compilation for use in understanding marine Nd cycling

Suzanne Robinson, Ruza Ivanovic, Tina van de Flierdt, Cecile Blanchet, Kazuyo Tachikawa, Ellen E. Martin, Carys Falko, Trevor Williams, Lauren Gregoire, Yves Plancherel, Catherine Jeandel & Thomas Arsouze
Understanding the role of sediment-water interactions in the oceanic cycling of neodymium (Nd) isotopes is essential for its reliable use as a modern and palaeoceanographic tracer of ocean circulation. However, the exact processes that control Nd cycling in the ocean are poorly defined and require an up-to-date knowledge of the sources, sinks and transformation of this tracer to and within the ocean (e.g. as per the GEOTRACES core mission). We propose a considerable improvement of...

Isotope compositions of a gas storage site Poland

T. Goldberg & J. Foeken

Data from: Gradual warming prior to the end-Permian mass extinction

Jana Gliwa, Michael Wiedenbeck, Martin Schobben, Clemens Vinzenz Ullmann, Wolfgang Kiessling, Abbas Ghaderi, Ulrich Struck & Dieter Korn
The biggest known mass extinction in the history of animal life occurred at the Permian-Triassic boundary and has often been linked to global warming. Previous studies suggested that a geologically rapid (less than 40 kyr) temperature increase of more than 10°C occurred simultaneously with the main extinction pulse. This hypothesis is challenged by geochemical and palaeontological data indicating profound environmental perturbations and a temperature rise prior to the main extinction. Using Secondary Ion Mass Spectrometry...

Additional file 2 of MarineMetagenomeDB: a public repository for curated and standardized metadata for marine metagenomes

Muhammad Kabiru Nata’ala, Anderson P. Avila Santos, Jonas Coelho Kasmanas, Alexander Bartholomäus, João Pedro Saraiva, Sandra Godinho Silva, Tina Keller-Costa, Rodrigo Costa, Newton C. M. Gomes, André Carlos Ponce de Leon Ferreira de Carvalho, Peter F. Stadler, Danilo Sipoli Sanches & Ulisses Nunes da Rocha
Additional file 2. Table S2: Some samples with the extracted columns and their labels.

Additional file 6 of MarineMetagenomeDB: a public repository for curated and standardized metadata for marine metagenomes

Muhammad Kabiru Nata’ala, Anderson P. Avila Santos, Jonas Coelho Kasmanas, Alexander Bartholomäus, João Pedro Saraiva, Sandra Godinho Silva, Tina Keller-Costa, Rodrigo Costa, Newton C. M. Gomes, André Carlos Ponce de Leon Ferreira de Carvalho, Peter F. Stadler, Danilo Sipoli Sanches & Ulisses Nunes da Rocha
Additional file 6. Table S6: Equivalent and comparable attributes in SRA and MG-RAST.

Additional file 7 of MarineMetagenomeDB: a public repository for curated and standardized metadata for marine metagenomes

Muhammad Kabiru Nata’ala, Anderson P. Avila Santos, Jonas Coelho Kasmanas, Alexander Bartholomäus, João Pedro Saraiva, Sandra Godinho Silva, Tina Keller-Costa, Rodrigo Costa, Newton C. M. Gomes, André Carlos Ponce de Leon Ferreira de Carvalho, Peter F. Stadler, Danilo Sipoli Sanches & Ulisses Nunes da Rocha
Additional file 7. Table S7: Packages and their versions used for the WebApp.

Plant DNA metabarcoding record from a sediment core from Lake Naleng, southeastern Tibetan Plateau

Sisi Liu, Stefan Kruse, Dirk Scherler, Richard H. Ree, Heike H. Zimmermann, Kathleen R. Stoof-Leichsenring, Laura S. Epp, Steffen Mischke & Ulrike Herzschuh
Here, we provide the raw plant DNA metabarcoding data archived in Lake Naleng sediment core spanning the late-glacial to the present (17,700 to 0 cal yr BP). Lake Naleng (31.10° N, 99.7°5 E, 4200 above sea level) is situated in a glacially-formed basin on the southeastern Tibetan Plateau. It is an alpine freshwater lake with a maximum water depth of 36.7 m, an open surface area of 1.7 km2, a specific conductivity of 0.045 mS/cm,...

Competing controls of fluid overpressurization and chloritization on strength and instability of faults in granite: Implications for seismicity triggered by fluid-injection

Fengshou Zhang, Rui Huang, Mengke An, Ki-Bok Min, Derek Elsworth, Hannes Hofmann & Xiaoguang Wang
Fluids injection for hydraulic stimulation and fracturing, typical in the development of enhanced geothermal systems (EGS) in granites, can reactivate deep faults and induce seismicity. Such faults typically contain chlorite coatings as an alteration product that may impact styles of deformation – aseismic through seismic. We performed shear experiments on simulated granite fault gouges under conditions typifying a geothermal reservoir at ~4 km depth with a confining pressure of 110 MPa, a temperature of 150℃,...

Chronological and sedimentological data from Potter Peninsula, South Shetland Islands.

Michael Bentley, Stephen Roberts, Pablo Heredia Barion, Jorge Strelin, Cornelia Spiegel, Samuel Niedermann & Lukas Wacker
The dataset comprises of stratigraphic chronological and sedimentological data from Potter Peninsula, King George Island, South Shetland Islands. The data have been used to constrain deglaciation and glacier dynamics on Potter Peninsula. Data collected in this study were funded by: Centro de Investigaciones en Ciencias de la Tierra (CICTERRA), the Direccion Nacional del Antartico/Instituto Antartico Argentino (DNA/IAA) in the framework of the Project PICTA, 2011 - 0102, IAA "Geomorfologia y Geologia Glaciar del Archipielago James...

Additional file 2 of MarineMetagenomeDB: a public repository for curated and standardized metadata for marine metagenomes

Muhammad Kabiru Nata’ala, Anderson P. Avila Santos, Jonas Coelho Kasmanas, Alexander Bartholomäus, João Pedro Saraiva, Sandra Godinho Silva, Tina Keller-Costa, Rodrigo Costa, Newton C. M. Gomes, André Carlos Ponce de Leon Ferreira de Carvalho, Peter F. Stadler, Danilo Sipoli Sanches & Ulisses Nunes da Rocha
Additional file 2. Table S2: Some samples with the extracted columns and their labels.

Data from: Machine learning identifies ecological selectivity patterns across the end-Permian mass extinction

William Foster, Georgy Ayzel, Jannes Münchmeyer, Tabea Rettelbach, Niklas Kitzmann, Terry Isson, Maria Mutti & Martin Aberhan
The end-Permian mass extinction occurred alongside a large swathe of environmental changes that are often invoked as extinction mechanisms, even when a direct link is lacking. One way to elucidate the cause(s) of a mass extinction is to investigate extinction selectivity as it can reveal critical information on organismic traits as key determinants of extinction and survival. Here we show that machine learning algorithms, specifically gradient boosted decision trees, can be used to identify determinants...

Research data_ upload.xlsx

Christof Sager, Kai Mangelsdorf, Alessandro Airo, Dirk Schulze-Makuch & Felix L. Arens
Data for the manuscript entitled: Habitability of Polygonal Soils in the Hyper-arid Atacama Desert after a Simulated Rain Experiment
Authors: Christof Sager, Alessandro Airo, Kai Mangelsdorf, Felix L. Arens, Cornelia Karger, Dirk Schulze-Makuch

Additional file 3 of MarineMetagenomeDB: a public repository for curated and standardized metadata for marine metagenomes

Muhammad Kabiru Nata’ala, Anderson P. Avila Santos, Jonas Coelho Kasmanas, Alexander Bartholomäus, João Pedro Saraiva, Sandra Godinho Silva, Tina Keller-Costa, Rodrigo Costa, Newton C. M. Gomes, André Carlos Ponce de Leon Ferreira de Carvalho, Peter F. Stadler, Danilo Sipoli Sanches & Ulisses Nunes da Rocha
Additional file 3. Table S3: Attributes chosen to represent different synonyms from SRAdb’s ‘sample_attribute’.

Additional file 4 of MarineMetagenomeDB: a public repository for curated and standardized metadata for marine metagenomes

Muhammad Kabiru Nata’ala, Anderson P. Avila Santos, Jonas Coelho Kasmanas, Alexander Bartholomäus, João Pedro Saraiva, Sandra Godinho Silva, Tina Keller-Costa, Rodrigo Costa, Newton C. M. Gomes, André Carlos Ponce de Leon Ferreira de Carvalho, Peter F. Stadler, Danilo Sipoli Sanches & Ulisses Nunes da Rocha
Additional file 4. Table S4: Marine ‘MarMDB’ attributes groups and their respective values.

Additional file 7 of MarineMetagenomeDB: a public repository for curated and standardized metadata for marine metagenomes

Muhammad Kabiru Nata’ala, Anderson P. Avila Santos, Jonas Coelho Kasmanas, Alexander Bartholomäus, João Pedro Saraiva, Sandra Godinho Silva, Tina Keller-Costa, Rodrigo Costa, Newton C. M. Gomes, André Carlos Ponce de Leon Ferreira de Carvalho, Peter F. Stadler, Danilo Sipoli Sanches & Ulisses Nunes da Rocha
Additional file 7. Table S7: Packages and their versions used for the WebApp.

Registration Year

  • 2022
    20
  • 2021
    4

Resource Types

  • Dataset
    24

Affiliations

  • Helmholtz Centre Potsdam - GFZ German Research Centre for Geosciences
    21
  • Helmholtz Centre for Environmental Research
    12
  • Federal University of Technology – Paraná
    12
  • University of Aveiro
    12
  • University of Algarve
    12
  • University of Lisbon
    12
  • Universidade de São Paulo
    12
  • Leipzig University
    12
  • Leibniz Institute of Freshwater Ecology and Inland Fisheries
    2
  • British Antarctic Survey
    2