454 Works

Circular RNA ZFR accelerates non-small cell lung cancer progression by acting as a miR-101-3p sponge to enhance CUL4B expression

Haifeng Zhang, Xiaolong Wang, Baoli Hu, Feng Zhang, Haitao Wei & Li Li
Non-small-cell lung carcinoma (NSCLC) is the most common type of lung cancer. Circular RNA ZFR (circZFR) is an identified circular RNA (circRNA) that is correlated with cancer progression. However, the role of circZFR in NSCLC remains unknown. In the present study, we aimed to investigate the function of circZFR in NSCLC and the underlying mechanism. The expression patterns of circZFR were determined using qRT-PCR in NSCLC samples and cell lines. The subcellular distribution of circZFR...

Circular RNA ZFR accelerates non-small cell lung cancer progression by acting as a miR-101-3p sponge to enhance CUL4B expression

Haifeng Zhang, Xiaolong Wang, Baoli Hu, Feng Zhang, Haitao Wei & Li Li
Non-small-cell lung carcinoma (NSCLC) is the most common type of lung cancer. Circular RNA ZFR (circZFR) is an identified circular RNA (circRNA) that is correlated with cancer progression. However, the role of circZFR in NSCLC remains unknown. In the present study, we aimed to investigate the function of circZFR in NSCLC and the underlying mechanism. The expression patterns of circZFR were determined using qRT-PCR in NSCLC samples and cell lines. The subcellular distribution of circZFR...

Identification of novel tetracycline resistance gene tet(X14) and its co-occurrence with tet(X2) in a tigecycline-resistant and colistin-resistant Empedobacter stercoris

Yingying Cheng, Yong Chen, Yang Liu, Yuqi Guo, Yanzi Zhou, Tingting Xiao, Shuntian Zhang, Hao Xu, Yunbo Chen, Tongling Shan, Yonghong Xiao & Kai Zhou
Tigecycline is one of the last-resort antibiotics to treat severe infections. Recently, tigecycline resistance has sporadically emerged with an increasing trend, and Tet(X) family represents a new resistance mechanism of tigecycline. In this study, a novel chromosome-encoded tigecycline resistance gene, tet(X14), was identified in a tigecycline-resistant and colistin-resistant Empedobacter stercoris strain ES183 recovered from a pig fecal sample in China. Tet(X14) shows 67.14-96.39% sequence identity to the other variants [Tet(X) to Tet(X13)]. Overexpression of Tet(X14)...

Additional file 2 of The long non-coding RNA lncMYOZ2 mediates an AHCY/MYOZ2 axis to promote adipogenic differentiation in porcine preadipocytes

Yang Yang, Yiqi Wu, Mengting Ji, Xiaoyin Rong, Yanwei Zhang, Shuai Yang, Chang Lu, Chunbo Cai, Pengfei Gao, Xiaohong Guo, Bugao Li & Guoqing Cao
Additional file 2.

Additional file 3 of The long non-coding RNA lncMYOZ2 mediates an AHCY/MYOZ2 axis to promote adipogenic differentiation in porcine preadipocytes

Yang Yang, Yiqi Wu, Mengting Ji, Xiaoyin Rong, Yanwei Zhang, Shuai Yang, Chang Lu, Chunbo Cai, Pengfei Gao, Xiaohong Guo, Bugao Li & Guoqing Cao
Additional file 3.

Additional file 3 of The long non-coding RNA lncMYOZ2 mediates an AHCY/MYOZ2 axis to promote adipogenic differentiation in porcine preadipocytes

Yang Yang, Yiqi Wu, Mengting Ji, Xiaoyin Rong, Yanwei Zhang, Shuai Yang, Chang Lu, Chunbo Cai, Pengfei Gao, Xiaohong Guo, Bugao Li & Guoqing Cao
Additional file 3.

Additional file 7 of Epitope vaccine design for Toxoplasma gondii based on a genome-wide database of membrane proteins

Xuan-Wu Li, Ni Zhang, Zhuo-Lin Li, Nouhoum Dibo, Zhen-Rong Ma, Bin Lu, Ye-Hong Huang, Yun-Feng Chang, Hong-Zhi Chen & Xiang Wu
Additional file 7. Initial predicted mouse MHC-II binding epitopes.

Additional file 7 of Epitope vaccine design for Toxoplasma gondii based on a genome-wide database of membrane proteins

Xuan-Wu Li, Ni Zhang, Zhuo-Lin Li, Nouhoum Dibo, Zhen-Rong Ma, Bin Lu, Ye-Hong Huang, Yun-Feng Chang, Hong-Zhi Chen & Xiang Wu
Additional file 7. Initial predicted mouse MHC-II binding epitopes.

Additional file 11 of Transcriptomic analysis of paternal behaviors in prairie voles

Florian Duclot, Yan Liu, Samantha K. Saland, Zuoxin Wang & Mohamed Kabbaj
Additional file 11. Summary statistics for the differential expression analysis. DE: differentially expressed. LS: lateral septum, MPOA: medial preoptic area, NAc: nucleus accumbens.

Additional file 1 of Morphological changes of TMJ disc in surgically treated ADDwoR patients: a retrospective study

Ruiyu Wang, Ruiye Bi, Yao Liu, Pinyin Cao, Bassam Abotaleb & Songsong Zhu
Additional file 1. Raw data of TMJ discs of ADDwoR patients.

Additional file 2 of Morphological changes of TMJ disc in surgically treated ADDwoR patients: a retrospective study

Ruiyu Wang, Ruiye Bi, Yao Liu, Pinyin Cao, Bassam Abotaleb & Songsong Zhu
Additional file 2. Raw data of TMJ discs following disc repositioning surgery.

Additional file 3 of Morphological changes of TMJ disc in surgically treated ADDwoR patients: a retrospective study

Ruiyu Wang, Ruiye Bi, Yao Liu, Pinyin Cao, Bassam Abotaleb & Songsong Zhu
Additional file 3. Stl files of TMJ discs in all patients.

Additional file 3 of Small molecule modulation of microbiota: a systems pharmacology perspective

Qiao Liu, Bohyun Lee & Lei Xie
Additional file 3. Table S2. Microbes with commensal effects on human health by manually literature review.

Additional file 4 of Small molecule modulation of microbiota: a systems pharmacology perspective

Qiao Liu, Bohyun Lee & Lei Xie
Additional file 4. Table S3. The Microbes with unknown effects in literature reviews and their SRWR inferred microbe effects.

Additional file 5 of Exosomal DNAJB11 promotes the development of pancreatic cancer by modulating the EGFR/MAPK pathway

Peng Liu, Fuqiang Zu, Hui Chen, Xiaoli Yin & Xiaodong Tan
Additional file 5: Table S5. The results of the Seahorse assay.

Additional file 6 of Exosomal DNAJB11 promotes the development of pancreatic cancer by modulating the EGFR/MAPK pathway

Peng Liu, Fuqiang Zu, Hui Chen, Xiaoli Yin & Xiaodong Tan
Additional file 6: Table S6. List of proteins identified in CoIP-based LC–MS/MS.

From Black Box to Shining Spotlight: Using Random Forest Prediction Intervals to Illuminate the Impact of Assumptions in Linear Regression

Andrew J. Sage, Yang Liu & Joe Sato
We introduce a pair of Shiny web applications that allow users to visualize random forest prediction intervals alongside those produced by linear regression models. The apps are designed to help undergraduate students deepen their understanding of the role that assumptions play in statistical modeling by comparing and contrasting intervals produced by regression models with those produced by more flexible algorithmic techniques. We describe the mechanics of each approach, illustrate the features of the apps, provide...

Additional file 2 of Proteomic alterations associated with residual disease in neoadjuvant chemotherapy treated ovarian cancer tissues

Emily R. Penick, Nicholas W. Bateman, Christine Rojas, Cuauhtemoc Magana, Kelly Conrads, Ming Zhou, Brian L. Hood, Guisong Wang, Niyati Parikh, Ying Huang, Kathleen M. Darcy, Yovanni Casablanca, Paulette Mhawech-Fauceglia, Thomas P. Conrads & G. Larry Maxwell
Additional file 2: Table S1. Proteins significantly altered between post versus pre-NACT tissues (LIMMA p-value<0.01). Table S2. Proteins significantly altered between R1 versus R0 patients in pre-NACT tissues (LIMMA p-value<0.05). Table S3. Significantly (LIMMA p<0.05) co-altered proteins between pre-NACT tumors from patients with any level of residual disease vs R0 patients from an independent ovarian cancer cohort (CPTAC 2016) that exhibit highly correlated abundance trends with the present ovarian cancer cohort. Table S4. Diseases and...

Additional file 2 of Circulating tumor DNA integrating tissue clonality detects minimal residual disease in resectable non-small-cell lung cancer

Siwei Wang, Ming Li, Jingyuan Zhang, Peng Xing, Min Wu, Fancheng Meng, Feng Jiang, Jie Wang, Hua Bao, Jianfeng Huang, Binhui Ren, Mingfeng Yu, Ninglei Qiu, Houhuai Li, Fangliang Yuan, Zhi Zhang, Hui Jia, Xinxin Lu, Shuai Zhang, Xiaojun Wang, Youtao Xu, Wenjia Xia, Tongyan Liu, Weizhang Xu, Xinyu Xu … & Rong Yin
Additional file 2. Table S2: Adjuvant treatment information.

Additional file 1 of Transcriptome analysis of MYB transcription factors family and PgMYB genes involved in salt stress resistance in Panax ginseng

Mingming Liu, Ke Li, Shichao Sheng, Mingyu Wang, Panpan Hua, Yanfang Wang, Ping Chen, Kangyu Wang, Mingzhu Zhao, Yi Wang & Meiping Zhang
Additional file 1: Table S1. Basic information of PgMYB gene family.

Additional file 1 of Transcriptome analysis of MYB transcription factors family and PgMYB genes involved in salt stress resistance in Panax ginseng

Mingming Liu, Ke Li, Shichao Sheng, Mingyu Wang, Panpan Hua, Yanfang Wang, Ping Chen, Kangyu Wang, Mingzhu Zhao, Yi Wang & Meiping Zhang
Additional file 1: Table S1. Basic information of PgMYB gene family.

Additional file 4 of Transcriptome analysis of MYB transcription factors family and PgMYB genes involved in salt stress resistance in Panax ginseng

Mingming Liu, Ke Li, Shichao Sheng, Mingyu Wang, Panpan Hua, Yanfang Wang, Ping Chen, Kangyu Wang, Mingzhu Zhao, Yi Wang & Meiping Zhang
Additional file 4: Table S4. The expressions of the PgMYB gene transcripts in 14 tissues, 42 cultivars’ roots and 4 aged roots (TPM).

Additional file 4 of Transcriptome analysis of MYB transcription factors family and PgMYB genes involved in salt stress resistance in Panax ginseng

Mingming Liu, Ke Li, Shichao Sheng, Mingyu Wang, Panpan Hua, Yanfang Wang, Ping Chen, Kangyu Wang, Mingzhu Zhao, Yi Wang & Meiping Zhang
Additional file 4: Table S4. The expressions of the PgMYB gene transcripts in 14 tissues, 42 cultivars’ roots and 4 aged roots (TPM).

Additional file 5 of Transcriptome analysis of MYB transcription factors family and PgMYB genes involved in salt stress resistance in Panax ginseng

Mingming Liu, Ke Li, Shichao Sheng, Mingyu Wang, Panpan Hua, Yanfang Wang, Ping Chen, Kangyu Wang, Mingzhu Zhao, Yi Wang & Meiping Zhang
Additional file 5: Table S5. Weight correlation network analysis concatenation relationships and value of PgMYB gene transcripts.

Additional file 15 of Epitope vaccine design for Toxoplasma gondii based on a genome-wide database of membrane proteins

Xuan-Wu Li, Ni Zhang, Zhuo-Lin Li, Nouhoum Dibo, Zhen-Rong Ma, Bin Lu, Ye-Hong Huang, Yun-Feng Chang, Hong-Zhi Chen & Xiang Wu
Additional file 15: Table S1. The initial result of the joint prediction using BepiPred-2.0 and ABCPred.

Registration Year

  • 2023
    31
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Resource Types

  • Dataset
    454

Affiliations

  • Second Xiangya Hospital of Central South University
    454
  • Chinese Academy of Sciences
    267
  • Zhejiang University
    256
  • Capital Medical University
    248
  • Chinese Academy of Medical Sciences & Peking Union Medical College
    247
  • Central South University
    240
  • Peking University
    233
  • Shanghai Jiao Tong University
    227
  • Huazhong University of Science and Technology
    210
  • Shandong University
    201