28 Works

Additional file 3 of Genetically predicted telomere length and Alzheimer’s disease endophenotypes: a Mendelian randomization study

Blanca Rodríguez-Fernández, Natalia Vilor-Tejedor, Eider M. Arenaza-Urquijo, Gonzalo Sánchez-Benavides, Marc Suárez-Calvet, Grégory Operto, Carolina Minguillón, Karine Fauria, Gwendlyn Kollmorgen, Ivonne Suridjan, Manuel Castro de Moura, David Piñeyro, Manel Esteller, Kaj Blennow, Henrik Zetterberg, Immaculata De Vivo, José Luis Molinuevo, Arcadi Navarro, Juan Domingo Gispert, Aleix Sala-Vila & Marta Crous-Bou
Additional file 3: Supplementary Table 1. Characteristics of the study participants with information for cognition outcomes. Mean and SD are shown for continuous variables. Supplementary Table 2. Characteristics of the study participants with information for neuroimaging outcomes. Mean and SD are shown for continuous variables. Supplementary Table 3. Characteristics of the study participants with information for CSF biomarkers. Mean and SD are shown for continuous variables.

Additional file 5 of Genetically predicted telomere length and Alzheimer’s disease endophenotypes: a Mendelian randomization study

Blanca Rodríguez-Fernández, Natalia Vilor-Tejedor, Eider M. Arenaza-Urquijo, Gonzalo Sánchez-Benavides, Marc Suárez-Calvet, Grégory Operto, Carolina Minguillón, Karine Fauria, Gwendlyn Kollmorgen, Ivonne Suridjan, Manuel Castro de Moura, David Piñeyro, Manel Esteller, Kaj Blennow, Henrik Zetterberg, Immaculata De Vivo, José Luis Molinuevo, Arcadi Navarro, Juan Domingo Gispert, Aleix Sala-Vila & Marta Crous-Bou
Additional file 5: Supplementary Figure 1. Leave-one-out permutation analysis plot for AD signature among individuals at high genetic predisposition to AD obtained by leaving out the SNP indicated and repeating the Inverse-Variance Weighted method with the rest of the instrumental variables. Supplementary Figure 2. Leave-one-out permutation analysis plot for Aging signature among individuals at high genetic predisposition to AD, obtained by leaving out the SNP indicated and repeating the Inverse-Variance Weighted method with the rest...

Additional file 5 of scTAM-seq enables targeted high-confidence analysis of DNA methylation in single cells

Agostina Bianchi, Michael Scherer, Roser Zaurin, Kimberly Quililan, Lars Velten & Renée Beekman
Additional file 5: Table S4. Non-HhaI amplicons used for cell selection.

Additional file 3 of scTAM-seq enables targeted high-confidence analysis of DNA methylation in single cells

Agostina Bianchi, Michael Scherer, Roser Zaurin, Kimberly Quililan, Lars Velten & Renée Beekman
Additional file 3: Table S2. Sequencing details per sample and condition.

Additional file 5 of scTAM-seq enables targeted high-confidence analysis of DNA methylation in single cells

Agostina Bianchi, Michael Scherer, Roser Zaurin, Kimberly Quililan, Lars Velten & Renée Beekman
Additional file 5: Table S4. Non-HhaI amplicons used for cell selection.

Additional file 8 of scTAM-seq enables targeted high-confidence analysis of DNA methylation in single cells

Agostina Bianchi, Michael Scherer, Roser Zaurin, Kimberly Quililan, Lars Velten & Renée Beekman
Additional file 8: Table S7 and Table S8. Correlation analysis between target CpGs and gene expression.

Additional file 2 of scTAM-seq enables targeted high-confidence analysis of DNA methylation in single cells

Agostina Bianchi, Michael Scherer, Roser Zaurin, Kimberly Quililan, Lars Velten & Renée Beekman
Additional file 2: Table S1. Design overview of the panel of targeted regions.

Additional file 1 of Genetically predicted telomere length and Alzheimer’s disease endophenotypes: a Mendelian randomization study

Blanca Rodríguez-Fernández, Natalia Vilor-Tejedor, Eider M. Arenaza-Urquijo, Gonzalo Sánchez-Benavides, Marc Suárez-Calvet, Grégory Operto, Carolina Minguillón, Karine Fauria, Gwendlyn Kollmorgen, Ivonne Suridjan, Manuel Castro de Moura, David Piñeyro, Manel Esteller, Kaj Blennow, Henrik Zetterberg, Immaculata De Vivo, José Luis Molinuevo, Arcadi Navarro, Juan Domingo Gispert, Aleix Sala-Vila & Marta Crous-Bou
Additional file 1: Supplementary Table 1. Characteristics of Single Nucleotide Polymorphisms (SNPs) associated with longer telomere length. The effect allele refers to the allele that is associated with longer telomere length. Chromosomal position of the SNPs (genome assembly GRCh37 (hg19)) according to the public archive for genetic variation within and across different species developed and hosted by the National Center for Biotechnology Information (NCBI) in collaboration with the National Human Genome Research Institute (NHGRI) (dbSNP).

Additional file 2 of Genetically predicted telomere length and Alzheimer’s disease endophenotypes: a Mendelian randomization study

Blanca Rodríguez-Fernández, Natalia Vilor-Tejedor, Eider M. Arenaza-Urquijo, Gonzalo Sánchez-Benavides, Marc Suárez-Calvet, Grégory Operto, Carolina Minguillón, Karine Fauria, Gwendlyn Kollmorgen, Ivonne Suridjan, Manuel Castro de Moura, David Piñeyro, Manel Esteller, Kaj Blennow, Henrik Zetterberg, Immaculata De Vivo, José Luis Molinuevo, Arcadi Navarro, Juan Domingo Gispert, Aleix Sala-Vila & Marta Crous-Bou
Additional file 2: Supplementary Table 1. Linear regression estimates for cognition outcomes in the entire sample. All models are adjusted for covariates: age, sex, education, and APOE status. Supplementary Table 2. Linear regression estimates for neuroimaging outcomes (i.e., Alzheimer’s disease and aging signatures) outcome in the entire sample. All models are adjusted for covariates: age, sex, education, and APOE status. Supplementary Table 3. Linear regression estimates for CSF biomarkers outcomes in the entire sample. All...

Additional file 2 of Genetically predicted telomere length and Alzheimer’s disease endophenotypes: a Mendelian randomization study

Blanca Rodríguez-Fernández, Natalia Vilor-Tejedor, Eider M. Arenaza-Urquijo, Gonzalo Sánchez-Benavides, Marc Suárez-Calvet, Grégory Operto, Carolina Minguillón, Karine Fauria, Gwendlyn Kollmorgen, Ivonne Suridjan, Manuel Castro de Moura, David Piñeyro, Manel Esteller, Kaj Blennow, Henrik Zetterberg, Immaculata De Vivo, José Luis Molinuevo, Arcadi Navarro, Juan Domingo Gispert, Aleix Sala-Vila & Marta Crous-Bou
Additional file 2: Supplementary Table 1. Linear regression estimates for cognition outcomes in the entire sample. All models are adjusted for covariates: age, sex, education, and APOE status. Supplementary Table 2. Linear regression estimates for neuroimaging outcomes (i.e., Alzheimer’s disease and aging signatures) outcome in the entire sample. All models are adjusted for covariates: age, sex, education, and APOE status. Supplementary Table 3. Linear regression estimates for CSF biomarkers outcomes in the entire sample. All...

Additional file 4 of Genetically predicted telomere length and Alzheimer’s disease endophenotypes: a Mendelian randomization study

Blanca Rodríguez-Fernández, Natalia Vilor-Tejedor, Eider M. Arenaza-Urquijo, Gonzalo Sánchez-Benavides, Marc Suárez-Calvet, Grégory Operto, Carolina Minguillón, Karine Fauria, Gwendlyn Kollmorgen, Ivonne Suridjan, Manuel Castro de Moura, David Piñeyro, Manel Esteller, Kaj Blennow, Henrik Zetterberg, Immaculata De Vivo, José Luis Molinuevo, Arcadi Navarro, Juan Domingo Gispert, Aleix Sala-Vila & Marta Crous-Bou
Additional file 4: Supplementary Table 1. Results of the effect of genetically predicted longer telomere length on AD endophenotypes in the entire sample. Supplementary Table 2. Results of the effect of genetically predicted longer telomere length on AD endophenotypes among APOE-ɛ4 carriers. Supplementary Table 3. Results of the effect of genetically predicted longer telomere length on AD endophenotypes among APOE-ɛ4 non-carriers. Supplementary Table 4. Results of the effect of genetically predicted longer telomere length on...

Additional file 4 of scTAM-seq enables targeted high-confidence analysis of DNA methylation in single cells

Agostina Bianchi, Michael Scherer, Roser Zaurin, Kimberly Quililan, Lars Velten & Renée Beekman
Additional file 4: Table S3. Complete list of CpG methylation-sensitive endonucleases potentially compatible with scTAM-seq.

Additional file 7 of scTAM-seq enables targeted high-confidence analysis of DNA methylation in single cells

Agostina Bianchi, Michael Scherer, Roser Zaurin, Kimberly Quililan, Lars Velten & Renée Beekman
Additional file 7: Table S6. Doublet detection details per sample and condition.

Additional file 8 of scTAM-seq enables targeted high-confidence analysis of DNA methylation in single cells

Agostina Bianchi, Michael Scherer, Roser Zaurin, Kimberly Quililan, Lars Velten & Renée Beekman
Additional file 8: Table S7 and Table S8. Correlation analysis between target CpGs and gene expression.

Bipolar data: EMDR vs Supportive Psychotherapy

Bridget Hogg, Joaquim Radua, Itxaso Gardoki-Souto, Marta Fontana-McNally, Walter Lupo, María Reinares, Esther Jiménez, Mercè Madre, Laura Blanco-Presas, Romina Cortizo, Anna Massó-Rodriguez, Juan Castaño, Isabel Argila, José Ignacio Castro-Rodríguez, Mercè Comes, Cristina Macias, Roberto Sánchez-González, Estanislao Mur, Patricia Novo, Adriane Ribeiro Rosa, Eduard Vieta, Frank Padberg, Victor Perez-Sola, Alicia Valiente-Gómez, Ana Moreno-Alcázar … & Benedikt Amann
Dataset from a randomized controlled trial testing the efficacy of 20 x 1 hour weekly sessions of Eye Movement Desensitization and Reprocessing (EMDR) therapy, with Supportive Therapy, in Bipolar Disorder patients with psychological trauma symptoms.

Data from: Sleep disorders in anti-NMDAR encephalitis

Helena Ariño, Amaia Muñoz-Lopetegi, Eugenia Martinez-Hernandez, Thais Armangue, Mireia Rosa-Justicia, Domingo Escudero, Nuria Matos, Francesc Graus, Gisela Sugranyes, Josefina Castro-Fornieles, Albert Compte, Josep O. Dalmau & Joan Santamaria Cano
This is supplemetal data (tables and methods) from a paper submitted for publication, whose objective was to describe the sleep disorders in anti-NMDA receptor encephalitis (anti-NMDARe).

Additional file 1 of Genetically predicted telomere length and Alzheimer’s disease endophenotypes: a Mendelian randomization study

Blanca Rodríguez-Fernández, Natalia Vilor-Tejedor, Eider M. Arenaza-Urquijo, Gonzalo Sánchez-Benavides, Marc Suárez-Calvet, Grégory Operto, Carolina Minguillón, Karine Fauria, Gwendlyn Kollmorgen, Ivonne Suridjan, Manuel Castro de Moura, David Piñeyro, Manel Esteller, Kaj Blennow, Henrik Zetterberg, Immaculata De Vivo, José Luis Molinuevo, Arcadi Navarro, Juan Domingo Gispert, Aleix Sala-Vila & Marta Crous-Bou
Additional file 1: Supplementary Table 1. Characteristics of Single Nucleotide Polymorphisms (SNPs) associated with longer telomere length. The effect allele refers to the allele that is associated with longer telomere length. Chromosomal position of the SNPs (genome assembly GRCh37 (hg19)) according to the public archive for genetic variation within and across different species developed and hosted by the National Center for Biotechnology Information (NCBI) in collaboration with the National Human Genome Research Institute (NHGRI) (dbSNP).

Additional file 4 of Genetically predicted telomere length and Alzheimer’s disease endophenotypes: a Mendelian randomization study

Blanca Rodríguez-Fernández, Natalia Vilor-Tejedor, Eider M. Arenaza-Urquijo, Gonzalo Sánchez-Benavides, Marc Suárez-Calvet, Grégory Operto, Carolina Minguillón, Karine Fauria, Gwendlyn Kollmorgen, Ivonne Suridjan, Manuel Castro de Moura, David Piñeyro, Manel Esteller, Kaj Blennow, Henrik Zetterberg, Immaculata De Vivo, José Luis Molinuevo, Arcadi Navarro, Juan Domingo Gispert, Aleix Sala-Vila & Marta Crous-Bou
Additional file 4: Supplementary Table 1. Results of the effect of genetically predicted longer telomere length on AD endophenotypes in the entire sample. Supplementary Table 2. Results of the effect of genetically predicted longer telomere length on AD endophenotypes among APOE-ɛ4 carriers. Supplementary Table 3. Results of the effect of genetically predicted longer telomere length on AD endophenotypes among APOE-ɛ4 non-carriers. Supplementary Table 4. Results of the effect of genetically predicted longer telomere length on...

Additional file 5 of Genetically predicted telomere length and Alzheimer’s disease endophenotypes: a Mendelian randomization study

Blanca Rodríguez-Fernández, Natalia Vilor-Tejedor, Eider M. Arenaza-Urquijo, Gonzalo Sánchez-Benavides, Marc Suárez-Calvet, Grégory Operto, Carolina Minguillón, Karine Fauria, Gwendlyn Kollmorgen, Ivonne Suridjan, Manuel Castro de Moura, David Piñeyro, Manel Esteller, Kaj Blennow, Henrik Zetterberg, Immaculata De Vivo, José Luis Molinuevo, Arcadi Navarro, Juan Domingo Gispert, Aleix Sala-Vila & Marta Crous-Bou
Additional file 5: Supplementary Figure 1. Leave-one-out permutation analysis plot for AD signature among individuals at high genetic predisposition to AD obtained by leaving out the SNP indicated and repeating the Inverse-Variance Weighted method with the rest of the instrumental variables. Supplementary Figure 2. Leave-one-out permutation analysis plot for Aging signature among individuals at high genetic predisposition to AD, obtained by leaving out the SNP indicated and repeating the Inverse-Variance Weighted method with the rest...

Additional file 3 of scTAM-seq enables targeted high-confidence analysis of DNA methylation in single cells

Agostina Bianchi, Michael Scherer, Roser Zaurin, Kimberly Quililan, Lars Velten & Renée Beekman
Additional file 3: Table S2. Sequencing details per sample and condition.

Additional file 6 of scTAM-seq enables targeted high-confidence analysis of DNA methylation in single cells

Agostina Bianchi, Michael Scherer, Roser Zaurin, Kimberly Quililan, Lars Velten & Renée Beekman
Additional file 6: Table S5. PCR program for DNA digestion and targeted amplification steps.

Additional file 6 of scTAM-seq enables targeted high-confidence analysis of DNA methylation in single cells

Agostina Bianchi, Michael Scherer, Roser Zaurin, Kimberly Quililan, Lars Velten & Renée Beekman
Additional file 6: Table S5. PCR program for DNA digestion and targeted amplification steps.

Data from: Active information maintenance in working memory by a sensory cortex

Xiaoxing Zhang, Wenjun Yan, Wenliang Wang, Hongmei Fan, Ruiqing Hou, Yulei Chen, Zhaoqin Chen, Chaofan Ge, Shumin Duan, Albert Compte & Chengyucheng T. Li
Working memory is a critical brain function for maintaining and manipulating information over delay periods of seconds. It is debated whether delay-period neural activity in sensory regions is important for the active maintenance of information during the delay period. Here, we tackle this question by examining the anterior piriform cortex (APC), an olfactory sensory cortex, in head-fixed mice performing several olfactory working memory tasks. Active information maintenance is necessary in these tasks, especially in a...

Additional file 2 of scTAM-seq enables targeted high-confidence analysis of DNA methylation in single cells

Agostina Bianchi, Michael Scherer, Roser Zaurin, Kimberly Quililan, Lars Velten & Renée Beekman
Additional file 2: Table S1. Design overview of the panel of targeted regions.

Additional file 4 of scTAM-seq enables targeted high-confidence analysis of DNA methylation in single cells

Agostina Bianchi, Michael Scherer, Roser Zaurin, Kimberly Quililan, Lars Velten & Renée Beekman
Additional file 4: Table S3. Complete list of CpG methylation-sensitive endonucleases potentially compatible with scTAM-seq.

Registration Year

  • 2022
    26
  • 2020
    1
  • 2019
    1

Resource Types

  • Dataset
    28

Affiliations

  • August Pi i Sunyer Biomedical Research Institute
    26
  • Barcelona Institute for Science and Technology
    24
  • Centre for Genomic Regulation
    24
  • Pompeu Fabra University
    24
  • Saarland University
    13
  • Max Planck Institute for Informatics
    13
  • Centro Nacional de Análisis Genómico
    13
  • Josep Carreras Leukaemia Research Institute
    10
  • Roche (Switzerland)
    10
  • Instituto de Salud Carlos III
    10