Additional file 2. List of human histone proteins from the Histone Sequence Database for every histone gene, the available set of transcript and coding sequence GENCODE annotations were obtained from the Ensembl 105 database. Next, only protein-coding transcripts identical between Ensembl automated annotation and HAVANA manual curation were retained. In those cases where several transcripts of one gene correspond to the same amino acid protein sequence, only one record was retained with preference given to...

Naoxintong (NXT), a prescribed traditional Chinese medicine, widely used in cerebrovascular and cardiovascular diseases, could be effective in diabetic wounds. This study evaluates the wound healing activity of NXT by employing an excisional wound splinting model. NXT was dissolved in saline and given daily by gavage. Wounds were induced at the dorsum of non-diabetic (db/+) and diabetic (db/db) mice and treated with saline or 700 mg/kg/d NXT for 16 days. Wound closure was measured every...

Additional file 3: Table S1. Premier sequences for qRT-PCR analysis.

Additional file 3: Table S1. Premier sequences for qRT-PCR analysis.

Additional file 5: Table S4. The list of flavonoid-related genes in the phylogenetic analysis from C. sativa and other plant species.

Additional file 8: Table S5. Cloning primers of CsFLS2 and CsFLS3 in C. sativa.

Dorper and Hu sheep exhibit different characteristics in terms of reproduction, growth, and meat quality. Comparison of the genomes of two breeds help to reveal important genomic information. In this study, whole genome resequencing of 30 individuals (Dorper, DB and Hu sheep, HY) identified 15,108,125 single nucleotide polymorphisms (SNPs). Population differentiation (Fst) and cross population extended haplotype homozygosity (XP-EHH) were performed for selective signal analysis. In total, 106 and 515 overlapped genes were present in...

Candida parapsilosis is becoming a predominant non-albicans cause of invasive candidiasis (IC). Echinocandins are the preferred choice for IC treatment and prophylaxis. Resistance to echinocandins in C. parapsilosis has emerged in several countries, but little is known about the susceptibility profile in China or about mechanisms of resistance. Here, we investigated the echinocandin susceptibilities of 2523 C. parapsilosis isolates collected from China and further explored the resistance mechanism among echinocandin-resistant isolates. Anidulafungin exhibited the highest...

Supplemental material, sj-xlsx-2-jbm-10.1177_03936155231166721 for Alterations of commensal microbiota are associated with pancreatic cancer by Tian Chen, Xuejiao Li, Gaoming Li, Yun Liu, Xiaochun Huang, Wei Ma, Chao Qian, Jie Guo, Shuo Wang, Qin Qin and Shanrong Liu in The International Journal of Biological Markers

Additional file 3: Table S2. KEGG and GO annotation clustering of regulated genes in LINP1-depleted cells

Additional file 3: Table S2. Sex effect for proteins and phosphorylation sites in three tissues in CC strains.

Additional file 1: Table S1. The significantly differentially expressed genes screened based on KEGG pathway analysis (X16 vs. X24). Table S2. The significantly differentially expressed genes screened based on KEGG pathway analysis (X24 vs. X48). Table S3. Relative abundances of intracellular metabolites at different fermentation time in an L-Phe overproducing E. coli.

Additional file 2: Table S1. Information about the 58 CC strains included in this study.

Supplementary Material 6

Additional file 4: Table S3. List of proteins specifically associating with LINP1 identified by RNA pulldown followed by HPLC-MS

Additional file 2: Table S2. Association results for the multi-ancestry index SNPs with the gene prioritization.

Additional file 17: Table S9. PheWAS UKB-MVP meta-analysis results for each index lipid variant at Bonferroni threshold for multiple testing p<=3.5e-8)

Additional file 2. a: Cascade Analysis Tool (CAT). b: Process mapping guide. c: Continuous Quality Improvement (CQI) action planning tool and instructions.

Additional file 2. a: Cascade Analysis Tool (CAT). b: Process mapping guide. c: Continuous Quality Improvement (CQI) action planning tool and instructions.

Additional file 10: Table S7. DESE phenotype-tissue association results using both GTEx gene-level and transcript-level selective expression.

Additional file 22: Table S14. Test for difference in effects for index variants from sex-stratified meta-analysis.

Additional file 23: Table S15. Comparison of the sex-specific effects.

Additional file 23: Table S15. Comparison of the sex-specific effects.

Additional file 25: Table S16. Comparison of effect size estimates for sex-stratified analysis in the replication cohorts.

Preliminary radiogenomic study of hepatitis B virus-related hepatocellular carcinoma: associations between MRI features and mutations Supplementary data - gene list