255 Works

Additional file 13 of Genomic Architecture of Yield Performance of an Elite Rice Hybrid Revealed by its Derived Recombinant Inbred Line and Their Backcross Hybrid Populations

Fan Zhang, Conghe Zhang, Xiuqin Zhao, Shuangbing Zhu, Kai Chen, Guixiang Zhou, Zhichao Wu, Min Li, Tianqing Zheng, Wensheng Wang, Zhi Yan, Qinyong Fei, Zhikang Li, Jinjie Chen & Jianlong Xu
Additional file 13: Table S8. The genotypic and phenotypic matrix of the population in ICIMapping format.

Additional file 10 of Targeted Identification of Rice Grain-Associated Gene Allelic Variation Through Mutation Induction, Targeted Sequencing, and Whole Genome Sequencing Combined with a Mixed-Samples Strategy

Kai Sun, Dandan Li, Aoyun Xia, Hua Zhao, Qin Wen, Sisi Jia, Jiafeng Wang, Guili Yang, Danhua Zhou, Cuihong Huang, Hui Wang, Zhiqiang Chen & Tao Guo
Additional file 10: Table S7. Mutation site information screened by whole genome sequencing.

Additional file 5 of Targeted Identification of Rice Grain-Associated Gene Allelic Variation Through Mutation Induction, Targeted Sequencing, and Whole Genome Sequencing Combined with a Mixed-Samples Strategy

Kai Sun, Dandan Li, Aoyun Xia, Hua Zhao, Qin Wen, Sisi Jia, Jiafeng Wang, Guili Yang, Danhua Zhou, Cuihong Huang, Hui Wang, Zhiqiang Chen & Tao Guo
Additional file 5: Table S2. Primers for amplifying fragments of the target site.

Additional file 9 of Targeted Identification of Rice Grain-Associated Gene Allelic Variation Through Mutation Induction, Targeted Sequencing, and Whole Genome Sequencing Combined with a Mixed-Samples Strategy

Kai Sun, Dandan Li, Aoyun Xia, Hua Zhao, Qin Wen, Sisi Jia, Jiafeng Wang, Guili Yang, Danhua Zhou, Cuihong Huang, Hui Wang, Zhiqiang Chen & Tao Guo
Additional file 9: Table S6. Mutation site information obtained by targeted sequencing.

Additional file 6 of MAPK8IP2 is a potential prognostic biomarker and promote tumor progression in prostate cancer

Zhenhao Zeng, Wenrui He, Yi Jiang, Hao Jiang, Xiaofeng Cheng, Wen Deng, Xiaochen Zhou, Cheng Zhang & Gongxian Wang
Additional file 6 Table S1. Browse interactions in tabular form.

Additional file 7 of MAPK8IP2 is a potential prognostic biomarker and promote tumor progression in prostate cancer

Zhenhao Zeng, Wenrui He, Yi Jiang, Hao Jiang, Xiaofeng Cheng, Wen Deng, Xiaochen Zhou, Cheng Zhang & Gongxian Wang
Additional file 7 Table S2. Gene Ontology term enrichment analysis of the MAPK8IP2 gene and its partner genes.

sj-xlsx-1-tct-10.1177_15330338221150069 - Supplemental material for The Application of Morphogo in the Detection of Megakaryocytes from Bone Marrow Digital Images with Convolutional Neural Networks

Xiaofen Wang, Ying Wang, Chao Qi, Sai Qiao, Suwen Yang, Rongrong Wang, Hong Jin & Jun Zhang
Supplemental material, sj-xlsx-1-tct-10.1177_15330338221150069 for The Application of Morphogo in the Detection of Megakaryocytes from Bone Marrow Digital Images with Convolutional Neural Networks by Xiaofen Wang, Ying Wang, Chao Qi, Sai Qiao, Suwen Yang, Rongrong Wang, Hong Jin and Jun Zhang in Technology in Cancer Research & Treatment

sj-xlsx-1-tct-10.1177_15330338221150069 - Supplemental material for The Application of Morphogo in the Detection of Megakaryocytes from Bone Marrow Digital Images with Convolutional Neural Networks

Xiaofen Wang, Ying Wang, Chao Qi, Sai Qiao, Suwen Yang, Rongrong Wang, Hong Jin & Jun Zhang
Supplemental material, sj-xlsx-1-tct-10.1177_15330338221150069 for The Application of Morphogo in the Detection of Megakaryocytes from Bone Marrow Digital Images with Convolutional Neural Networks by Xiaofen Wang, Ying Wang, Chao Qi, Sai Qiao, Suwen Yang, Rongrong Wang, Hong Jin and Jun Zhang in Technology in Cancer Research & Treatment

CIED-Stack gas concentrations, 2015-2018

Ling Tang, Min Jia, Junai Yang, Ling Li, Xin Bo & Zhifu Mi
The Chinese Industrial Emissions Database (CIED) provides inventory of particulate matter (PM), SO2 and NOX from Chinese industries from 2015 to 2018, based on direct measurements from China’s continuous emission monitoring systems (CEMS) network. This document provides stack gas concentrations for China’s different industrial emission sources.

CIED-Activity data, 2015-2018

Ling Tang, Min Jia, Junai Yang, Ling Li, Xin Bo & Zhifu Mi
The Chinese Industrial Emissions Database (CIED) provides inventory of particulate matter (PM), SO2 and NOX from Chinese industries from 2015 to 2018, based on direct measurements from China’s continuous emission monitoring systems (CEMS) network. This document provides activity data for China’s different industrial emission sources.

CIED-Absolute emissions, 2015-2018

Ling Tang, Min Jia, Junai Yang, Ling Li, Xin Bo & Zhifu Mi
The Chinese Industrial Emissions Database (CIED) provides inventory of particulate matter (PM), SO2 and NOX from Chinese industries from 2015 to 2018, based on direct measurements from China’s continuous emission monitoring systems (CEMS) network. This document provides absolute emissions for China’s different industrial emission sources.

METTL3-mediated long non-coding RNA MIR99AHG methylation targets miR-4660 to promote bone marrow mesenchymal stem cell osteogenic differentiation

Lintao Li, Beiyue Wang, Xing Zhou, Hao Ding, Chang Sun, Yicun Wang, Fan Zhang & Jianning Zhao
Whether long non-coding RNA Mir-99a-Let-7c Cluster Host Gene (LncRNA MIR99AHG) is involved in osteoporosis (OP) remains vague, so we hereby center on its implication. Old C57BL/6J mice were injected with the silencing lentivirus of MIR99AHG and subjected to microCT analysis and immunohistochemistry on osteogenic cells. The osteogenic differentiation of bone marrow mesenchymal stem cells (BMSCs) with or without transfection was determined by alkaline phosphatase (ALP) and Alizarin Red S staining. Total N(6)-methyladenosine (m6A) on the...

Additional file 9 of LncRNA CEBPA-DT promotes liver cancer metastasis through DDR2/β-catenin activation via interacting with hnRNPC

Yunshi Cai, Tao Lyu, Hui Li, Chang Liu, Kunlin Xie, Lin Xu, Wei Li, Hu Liu, Jiang Zhu, Yinghao Lyu, Xuping Feng, Tian Lan, Jiayin Yang & Hong Wu
Additional file 9. Supplementary RNA sequencing results.

Additional file 1 of Evolution of the CBL and CIPK gene families in Medicago: genome-wide characterization, pervasive duplication, and expression pattern under salt and drought stress

Xiao-Xia Zhang, Xiao-Long Ren, Xiao-Tong Qi, Zhi-Min Yang, Xiao-Lei Feng, Tian Zhang, Hui-Jie Wang, Peng Liang, Qi-Ying Jiang, Wen-Jun Yang, Yuan Fu, Min Chen, Zhi-Xi Fu & Bo Xu
Additional file 1: Table S1. Summary of CBL gene characteristics in Medicago and C. arietinum.

Additional file 2 of Evolution of the CBL and CIPK gene families in Medicago: genome-wide characterization, pervasive duplication, and expression pattern under salt and drought stress

Xiao-Xia Zhang, Xiao-Long Ren, Xiao-Tong Qi, Zhi-Min Yang, Xiao-Lei Feng, Tian Zhang, Hui-Jie Wang, Peng Liang, Qi-Ying Jiang, Wen-Jun Yang, Yuan Fu, Min Chen, Zhi-Xi Fu & Bo Xu
Additional file 2: Table S2. Summary of CIPK gene characteristics in Medicago and C. arietinum.

Additional file 6 of Evolution of the CBL and CIPK gene families in Medicago: genome-wide characterization, pervasive duplication, and expression pattern under salt and drought stress

Xiao-Xia Zhang, Xiao-Long Ren, Xiao-Tong Qi, Zhi-Min Yang, Xiao-Lei Feng, Tian Zhang, Hui-Jie Wang, Peng Liang, Qi-Ying Jiang, Wen-Jun Yang, Yuan Fu, Min Chen, Zhi-Xi Fu & Bo Xu
Additional file 6: Table S4. CIPK protein sequences used to build phylogenetic tree.

Additional file 11 of Proteome-wide analyses reveal diverse functions of protein acetylation and succinylation modifications in fast growing stolons of bermudagrass (Cynodon dactylon L.)

Bing Zhang, Zhuoting Chen, Qixue Sun & Jianxiu Liu
Additional file 11: Table S4: Proteins with both acetylation and succinylation modifications.

Additional file 14 of Proteome-wide analyses reveal diverse functions of protein acetylation and succinylation modifications in fast growing stolons of bermudagrass (Cynodon dactylon L.)

Bing Zhang, Zhuoting Chen, Qixue Sun & Jianxiu Liu
Additional file 14: Table S7: Phosphoproteins and phosphopeptides previously identified in fast growing bermudagrass stolons.

Additional file 26 of Proteogenomic insights into the biology and treatment of pancreatic ductal adenocarcinoma

Yexin Tong, Mingjun Sun, Lingli Chen, Yunzhi Wang, Yan Li, Lingling Li, Xuan Zhang, Yumeng Cai, Jingbo Qie, Yanrui Pang, Ziyan Xu, Jiangyan Zhao, Xiaolei Zhang, Yang Liu, Sha Tian, Zhaoyu Qin, Jinwen Feng, Fan Zhang, Jiajun Zhu, Yifan Xu, Wenhui Lou, Yuan Ji, Jianyuan Zhao, Fuchu He, Yingyong Hou … & Chen Ding
Additional file 26: Table S4. The Effects of Diabetes on the Proteogenomic Characteristics of PDAC. Table S4A Mutations and arm events information in PDAC patients with or without diabetes history. Table S4B Matrix of differential pathway enrichment in patients with or without diabetes history at mRNA level. Table S4C Matrix of differential pathway enrichment in patients with or without diabetes history at protein level.

Myotubularin related protein 7 is essential for the spermatogonial stem cell homeostasis via PI3K/AKT signaling

Dan Zhao, Cong Shen, Tingting Gao, Hong Li, Yueshuai Guo, Feng Li, Chenchen Liu, Yuanyuan Liu, Xia Chen, Xi Zhang, Yangyang Wu, Yi Yu, Meng Lin, Yan Yuan, Xiaofang Chen, Xiaoyan Huang, Shenmin Yang, Jun Yu, Jun Zhang & Bo Zheng
Myotubularin related protein 7 (MTMR7), a key member of the MTMR family, depicts phosphatase activity and is involved in myogenesis and tumor growth. We have previously identified MTMR7 in the proteomic profile of mouse spermatogonial stem cell (SSC) maturation and differentiation, implying that MTMR7 is associated with neonatal testicular development. In this study, to further explore the distribution and function of MTMR7 in mouse testis, we studied the effect of Mtmr7 knockdown on neonatal testicular...

AQUATIC SPORTS REHABILITATION ON FUNCTIONAL RECOVERY OF KNEE JOINT INJURY

Qin Li, Shan Chen, Yuanyuan Zang, Xiaoyan Zhang & Hong Chen
ABSTRACT Introduction Knee joint injury is a common sports injury and how to speed up the recovery process is a concern for all athletes. Objective Determine whether aquatic sports rehabilitation nursing can accelerate the rehabilitation process of knee joint injuries. Methods Thirty patients with knee ligament or meniscal injury were divided into an aquatic sports group and a control group. The control group assumed general recovery measures, while the aquatic exercise group was added another...

Data from: Demography and speciation history of the homoploid hybrid pine Pinus densata on the Tibetan Plateau

Jie Gao, Baosheng Wang, Jian-Feng Mao, Pär Ingvarsson, Qing-Ying Zeng & Xiao-Ru Wang
Pinus densata is an ecologically successful homoploid hybrid that inhabits vast areas of heterogeneous terrain on the southeastern Tibetan Plateau as a result of multiple waves of colonization. Its region of origin, route of colonization onto the plateau and the directions of introgression with its parental species have previously been defined, but little is known about the isolation and divergence history of its populations. In this study, we surveyed nucleotide polymorphism over eight nuclear loci...

Data from: De novo transcriptome assembly databases in the butterfly orchid Phalaenopsis equestris

Shan-Ce Niu, Qing Xu, Guo-Qiang Zhang, Yong-Qiang Zhang, Wen-Chieh Tsai, Jui-Ling Hsu, Chieh-Kai Liang, Yi-Bo Luo & Zhong-Jian Liu
Orchids are renowned for their spectacular flowers and ecological adaptations. After the sequencing of the genome of the tropical epiphytic orchid Phalaenopsis equestris, we combined Illumina HiSeq2000 for RNA-Seq and Trinity for de novo assembly to characterize the transcriptomes for 11 diverse P. equestris tissues representing the root, stem, leaf, flower buds, column, lip, petal, sepal and three developmental stages of seeds. Our aims were to contribute to a better understanding of the molecular mechanisms...

Data from: Tree species richness increases ecosystem carbon storage in subtropical forests

Xiaojuan Liu, Stefan Trogisch, Jin-Sheng He, Pascal A. Niklaus, Helge Bruelheide, Zhiyao Tang, Alexandra Erfmeier, Michael Scherer-Lorenzen, Katherina A. Pietsch, Bo Yang, Peter Kühn, Thomas Scholten, Yuanyuan Huang, Chao Wang, Michael Staab, Katrin N. Leppert, Christian Wirth, Bernhard Schmid & Keping Ma
Forest ecosystems are an integral component of the global carbon cycle as they take up and release large amounts of C in short time (C flux) or accumulate it over longer time (C stock). However, there remains uncertainty about whether and in which direction C fluxes and in particular C stocks may differ between forests of high vs. low species richness. Based on a comprehensive dataset derived from field-based measurements, we tested the effect of...

Long non-coding RNA XIST promotes the progression of esophageal squamous cell carcinoma through sponging miR-129-5p and upregulating CCND1 expression

Haoran Wang, Haomiao Li, Yongkui Yu, Qingfeng Jiang, Ruixiang Zhang, Haibo Sun, Wenqun Xing & Yin Li
Long non-coding RNA (lncRNA) X inactive specific transcript (XIST) has been identified as an oncogenic lncRNA in a series of human cancers, including esophageal squamous cell carcinoma (ESCC). In this study, we aimed to further explore the underlying mechanism of XIST on ESCC progression. qRT-PCR assay was used to determine the levels of XIST and miR-129-5p. Western blot analysis was performed to assess cyclin D1 (CCND1) expression. Bioinformatic analysis was performed using starBase v2.0 software....

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