1. Habitat loss, fragmentation and alteration of the landscape matrix are interdependent processes, collectively responsible for most recent species extinctions. Thus, determining the extent to which these landscape processes affect animals is critical for conservation. However, researchers have often assumed that interdependent effects are independently related to animals’ responses, underestimating the importance of one or several landscape processes in driving species declines. 2. We demonstrate how to disentangle the interdependent effects of habitat area, fragmentation,...
Data from: Genomic analysis and prediction within a US public collaborative winter wheat regional testing nurseryTrevor W. Rife, Robert A. Graybosch & Jesse A. Poland
The development of inexpensive, whole-genome profiling enables a transition to allele-based breeding using genomic prediction models. These models consider alleles shared between lines to predict phenotypes and select new lines based on estimated breeding values. This approach can leverage highly-unbalanced datasets common to breeding programs. The Southern Regional Performance Nursery (SRPN) is a public nursery established by the USDA-ARS in 1931 to characterize performance and quality of near-release wheat varieties from breeding programs in the...
Data from: Ovary development and cold tolerance of the invasive pest Drosophila suzukii (Matsumura) in the central plains of Kansas, United StatesElizabeth R. Everman, Philip J. Freda, Mariah Brown, Adam J. Schieferecke, Gregory J. Ragland & Theodore J. Morgan
Environmental challenges presented by temperature variation can be overcome through phenotypic plasticity in small invasive ectotherms. We tested the effect of thermal exposure to 21, 18, and 11°C throughout the whole life cycle of individuals, thermal exposure of adults reared at 25°C to 15 and 11°C for a 21-d period, and long (14:10 hr) and short (10:14 hr) photoperiod on ovary size and development in Drosophila suzukii (Matsumura) (Diptera: Drosophilidae) cultured from a recently established...
Data from: An integrated genotyping-by-sequencing polymorphism map for over 10,000 sorghum genotypesZhenbin Hu, Marcus O. Olatoye, Sandeep Marla & Geoffrey P. Morris
SNPs_imp.recode.vcfImputed SNP dataset for over 10,000 sorghum accessions.Original_chr1.recode.vcf.gzOriginal SNP which not merged, not imputed on chromosome 1.original_chr1.recode.vcf.gzOriginal_chr2.recode.vcfOriginal SNP which not merged, not imputed on chromosome 2original_chr2.recode.vcf.gzOriginal_chr3.recode.vcfOriginal SNP which not merged, not imputed on chromosome 3.original_chr3.recode.vcf.gzoriginal_chr4.recode.vcfOriginal SNP which not merged, not imputed on chromosome 4.Original_chr5.recode.vcfOriginal SNP which not merged, not imputed on chromosome 5.original_chr5.recode.vcf.gzOriginal_chr6.recode.vcfOriginal SNP which not merged, not imputed on chromosome 6.original_chr6.recode.vcf.gzOriginal_chr7.recode.vcfOriginal SNP which not merged, not imputed on chromosome 7.original_chr7.recode.vcf.gzOriginal_chr8.recode.vcfOriginal SNP which not merged,...
1. Species interactions are integral to ecological community function and the structure of species interactions has repercussions for the consequences of species extinctions. Few studies have examined the role of environmental factors in controlling species interaction networks across time. 2. We examined variation in plant-grasshopper network structural properties in response to three major grassland drivers: periodic fire, ungulate grazing and climate. 3. We sequenced a plant barcoding gene from extracted grasshopper gut contents to characterize...
Data from: Harvesting effects on wild bee communities in bioenergy grasslands depend on nesting guildBrian J. Spiesman, Ashley Bennett, Rufus Isaacs & Claudio Gratton
Conversion of annual crops to native perennial grasslands for bioenergy production may help conserve wild bees by enhancing nest and food resources. However, bee response to the disturbance of biomass harvesting may depend on their nesting location, thus their vulnerability to nest destruction, and the response of the forb community on which they forage. Moreover, because bees have long foraging ranges, effects of local harvesting may depend on the amount of natural habitat in the...
Data from: Effects of grasshoppers on prairies: herbivore composition matters more than richness in three grassland ecosystemsAngela N. Laws, Chelse M. Prather, David H. Branson & Steven C. Pennings
1. Understanding how biodiversity affects ecosystem processes is a key question in ecology. Previous research has found that increasing plant diversity often enhances many ecosystem processes, but less is known about the role of consumer diversity to ecosystem processes, especially in terrestrial ecosystems. Furthermore, we do not know how general biodiversity responses are among ecosystem types. 2. We examined the role of insect herbivore (Orthoptera) diversity on plant production using parallel field experiments in three...
Evolution of plants under climatic gradients may lead to clinal adaptation. Understanding the genomic basis of clinal adaptation in crops species could facilitate breeding for climate resilience. We investigated signatures of clinal adaptation in the cereal crop sorghum (Sorghum bicolor L. [Moench]) to the precipitation gradient in West Africa using a panel (n = 607) of sorghum accessions from diverse agroclimatic zones of Nigeria. Significant correlations were observed between common-garden phenotypes of three putative climate-adaptive...
1. Nocturnal transpiration can impact water balance from the local community to earth-atmosphere fluxes. However, the dynamics and drivers of nocturnal transpiration among coexisting plant functional groups in herbaceous ecosystems are unknown. 2. Here, we addressed the following questions: (1) How do nocturnal (Enight) and diurnal (Eday) transpiration vary among coexisting grasses, forbs, and shrubs in a tallgrass prairie? (2) What environmental variables drive Enight and do these differ from the drivers of Eday? (3)...
Data from: Population genomics of sorghum (Sorghum bicolor) across diverse agroclimatic zones of NigerFanna Maina, Sophie Bouchet, Sandeep R. Marla, Zhenbin Hu, Jianan Wang, Aissata Mamadou, Magagi Abdou, Abdoul-Aziz Saïdou & Geoffrey Preston Morris
Improving adaptation of staple crops in developing countries is important to ensure food security. In the West African country of Niger, the staple crop sorghum (Sorghum bicolor) is cultivated across diverse agroclimatic zones, but the genetic basis of local adaptation has not been described. The objectives of this study were to characterize the genomic diversity of sorghum from Niger and to identify genomic regions conferring local adaptation to agroclimatic zones and farmer preferences. We analyzed...
Data from: Investigating behavioral drivers of seasonal Shiga-Toxigenic Escherichia Coli (STEC) patterns in grazing cattle using an agent-based modelDaniel E. Dawson, Jocelyn H. Keung, Monica G. Napoles, Michael R. Vella, Shi Chen, Mike Sanderson, Cristina Lanzas & Michael W. Sanderson
The causes of seasonal variability in pathogen transmission are not well understood, and have not been comprehensively investigated. In an example for enteric pathogens, incidence of Escherichia coli O157 (STEC) colonization in cattle is consistently higher during warmer months compared to cooler months in various cattle production systems. However, actual mechanisms for this seasonality remain elusive. In addition, the influence of host (cattle) behavior on this pattern has not been thoroughly considered. To that end,...
Kansas State University11
University of Wisconsin-Madison2
University of Nebraska - Lincoln2
New Mexico State University1
University of North Carolina1
United States Department of Agriculture1
University of Oklahoma1
University of Colorado Boulder1
University of Canterbury1
University of Houston1