23,922 Works

weecology/PortalData 1.115.0

S. K. Morgan Ernest, Glenda M. Yenni, Ginger Allington, Ellen K. Bledsoe, Erica M. Christensen, Renata Diaz, Keith Geluso, Jacob R. Goheen, Qinfeng Guo, Edward Heske, Douglas Kelt, Joan M. Meiners, Jim Munger, Carla Restrepo, Douglas A. Samson, Michelle R. Schutzenhofer, Marian Skupski, Sarah R. Supp, Katherine M. Thibault, Shawn D. Taylor, Ethan P. White, Diane W. Davidson, James H. Brown & Thomas J. Valone
Official Repo of the Portal Project Data

Simulations of Circumbinary Planets

Billy Quarles
Tar archive of simulations of circumbinary planets orbiting a range of host binary stars. Each file in the archive has the assumed mass ratio, mu, and binary eccentricity, e_bin, in the file name as a tuple (mu,e_bin). Tools in python to manipulate and plot the data are provided through a GitHub repository, https://github.com/saturnaxis/CBP_stability. Inside each file contains a comma delimited text file, where the columns are the initial semimajor axis ratio, the initial phase of...

Simulations of Circumbinary Planets

Billy Quarles
Tar archive of simulations of circumbinary planets orbiting a range of host binary stars. Each file in the archive has the assumed mass ratio, mu, and binary eccentricity, e_bin, in the file name as a tuple (mu,e_bin). Tools in python to manipulate and plot the data are provided through a GitHub repository, https://github.com/saturnaxis/CBP_stability. Inside each file contains a comma delimited text file, where the columns are the initial semimajor axis ratio, the initial phase of...

Geographic variation of tree height of Pinus pinea L. gathered from common gardens in Europe

Natalia VIZCAÍNO-PALOMAR, Marta BENITO GARZÓN, Sven MUTKE, Denis VAUTHIER & Bruno FADY
This dataset collects individual georeferenced tree height data from Pinus pinea L. planted in common gardens in France and Spain, between years 1993 and 1997. The experimental design varies depending on the common garden, from a randomized complete to incomplete block design, RCB or RIB, respectively. The final dimensions of this database is 56,624 individual tree height measurements with 9 common gardens and 55 different provenances. The data can be used to assess genetic variation...

Geographic variation of tree height of Pinus nigra Arn. gathered from common gardens in Europe

Natalia VIZCAÍNO-PALOMAR, Marta BENITO GARZÓN, Ricardo ALIA, Guia GIOVANELLI, Gerhard HUBER, Muhidin ŠEHO & Bruno FADY
This dataset collects individual georeferenced tree height data from Pinus nigra Arn. planted in common gardens in France, Germany and Spain, between years 1968 and 2009. The experimental design varies depending on the common garden, from a randomized complete to incomplete block design, RCB or RIB, respectively. The final dimension of the dataset is 194,642 individual tree height data measurements with 15 common gardens and 78 different provenances. The data can be used to assess...

Geographic variation of tree height of Pinus pinaster Aiton gathered from common gardens in Europe and North-Africa

Natalia VIZCAÍNO-PALOMAR, Marta BENITO GARZÓN, Ricardo ALIA, Patrick PASTUSZKA, Annie RAFFIN, Hassan SBAY & Bruno FADY
This dataset collects individual georeferenced tree height data from Pinus pinaster Aiton planted in common gardens in France, Morocco and Spain, between years 1966 and 1992. The experimental design varies depending on the common garden, from a randomized complete to incomplete block design, RCB or RIB, respectively. The final dimension of the dataset is 123,801 individual tree height data measurements with 14 common gardens and 182 different genetic units. The data can be used to...

SSD2 tools for Chemical Contaminants Occurrence Data

European Food Safety Authority
Member States and other stakeholders can submit their chemical contaminants occurrence data using the EFSA tools created for this purpose. Tools are structured in accordance with the SSD2 guidance and provide features that support manual data entry.
Please read the instructions before using the tools. This version replaces version 6 to include minor fixes to the template for users.

Dynamics of stardust: Modelling vibrational dissociation of [H2-HCO]+

Peter Kraus, H. Tobias Alznauer & Irmgard Frank
Supporting information for the article. Archives figure_*.tar.gz contain data used to generate all Figures in the manuscript. Archive python_tools.tar.gz contains supplementary python scripts to process trajectory files, and to plot figures. Archives runs_*.tar.gz contain raw data from CPMD calculations. They are grouped by method and excited bond. See README for details.

Simulation CER160_9_POPC_512_TM3_10_5up_5down_NaCl_150mM_310K (rep1)

Hector Martinez-Seara
Title publication: A Ceramide-Regulated Element in the Late Endosomal Protein LAPTM4B Controls Amino Acid Transporter Interaction Year publication: 2018 DOI publication: 10.1021/acscentsci.7b00582 Description: Simulation POPC membrane containing ten LAPTM4B-TM3 peptides and 9 ceramide (CER160) originally in the water phase using charmm36 at 310K. MD engine: 2016.2-dev-20170105-4feb0be Force field: charmm36 Temperature: 310 K Pressure: 1 bar Simulation time: 2134 ns Saving frequency: 100 ps Molecular content: TM3 10
POPC 512
CER160 9
SOL 34248
NA 102
...

Simulation CER160_9_POPC_512_TM3_10_5up_5down_NaCl_150mM_310K (rep1)

Hector Martinez-Seara
Title publication: A Ceramide-Regulated Element in the Late Endosomal Protein LAPTM4B Controls Amino Acid Transporter Interaction Year publication: 2018 DOI publication: 10.1021/acscentsci.7b00582 Description: Simulation POPC membrane containing ten LAPTM4B-TM3 peptides and 9 ceramide (CER160) originally in the water phase using charmm36 at 310K. MD engine: 2016.2-dev-20170105-4feb0be Force field: charmm36 Temperature: 310 K Pressure: 1 bar Simulation time: 2134 ns Saving frequency: 100 ps Molecular content: TM3 10
POPC 512
CER160 9
SOL 34248
NA 102
...

Simulation CER160_50_POPC_512_NaCl_150mM_310K (rep1)

Hector Martinez-Seara
Title publication: A Ceramide-Regulated Element in the Late Endosomal Protein LAPTM4B Controls Amino Acid Transporter Interaction Year publication: 2018 DOI publication: 10.1021/acscentsci.7b00556 Description: Simulation POPC membrane containing ~8% ceramide (CER160) using charmm36 at 310K. MD engine: Gromacs 2016.2-dev-20170105-4feb0be Force field: charmm36 Temperature: 310 K Pressure: 1 bar Simulation time: 1069 ns Saving frequency: 100 ps (A version with saving frequency of 10 ps can be found in the following links) https://zenodo.org/deposit/1230317 https://zenodo.org/deposit/1230325 Molecular content:
POPC...

Simulation CER160_50_POPC_512_NaCl_150mM_310K (rep1)

Hector Martinez-Seara
Title publication: A Ceramide-Regulated Element in the Late Endosomal Protein LAPTM4B Controls Amino Acid Transporter Interaction Year publication: 2018 DOI publication: 10.1021/acscentsci.7b00556 Description: Simulation POPC membrane containing ~8% ceramide (CER160) using charmm36 at 310K. MD engine: Gromacs 2016.2-dev-20170105-4feb0be Force field: charmm36 Temperature: 310 K Pressure: 1 bar Simulation time: 1069 ns Saving frequency: 100 ps (A version with saving frequency of 10 ps can be found in the following links) https://zenodo.org/deposit/1230317 https://zenodo.org/deposit/1230325 Molecular content:
POPC...

Simulation CER160_50_POPC_512_NaCl_150mM_310K (rep1) - 10ps trajectory (Part2)

Hector Martinez-Seara
Title publication: A Ceramide-Regulated Element in the Late Endosomal Protein LAPTM4B Controls Amino Acid Transporter Interaction Year publication: 2018 DOI publication: 10.1021/acscentsci.7b00556 Description: Simulation POPC membrane containing ~8% ceramide (CER160) using charmm36 at 310K. Contains Part 2&3 (500-1069 ns) of the trajectory in https://zenodo.org/deposit/1219494 with saving a frequency 10 ps. MD engine: Gromacs 2016.2-dev-20170105-4feb0be Force field: charmm36 Temperature: 310 K Pressure: 1 bar Simulation time: 1069 ns Saving frequency: 10 ps Molecular content:
POPC 512
...

Simulation CER160_50_POPC_512_NaCl_150mM_310K (rep1) - 10ps trajectory (Part2)

Hector Martinez-Seara
Title publication: A Ceramide-Regulated Element in the Late Endosomal Protein LAPTM4B Controls Amino Acid Transporter Interaction Year publication: 2018 DOI publication: 10.1021/acscentsci.7b00556 Description: Simulation POPC membrane containing ~8% ceramide (CER160) using charmm36 at 310K. Contains Part 2&3 (500-1069 ns) of the trajectory in https://zenodo.org/deposit/1219494 with saving a frequency 10 ps. MD engine: Gromacs 2016.2-dev-20170105-4feb0be Force field: charmm36 Temperature: 310 K Pressure: 1 bar Simulation time: 1069 ns Saving frequency: 10 ps Molecular content:
POPC 512
...

Simulation CER160_50_POPC_512_TM3_10_5up_5down_NaCl_150mM_310K (rep1)

Hector Martinez-Seara
Title publication: A Ceramide-Regulated Element in the Late Endosomal Protein LAPTM4B Controls Amino Acid Transporter Interaction Year publication: 2018 DOI publication: 10.1021/acscentsci.7b00572 Description: Simulation POPC membrane containing ~8 mol% ceramide (CER160) and ten LAPTM4B-TM3 peptides using charmm36 at 310K. MD engine: 2016.2-dev-20170105-4feb0be Force field: charmm36 Temperature: 310 K Pressure: 1 bar Simulation time: 2971 ns Saving frequency: 100 ps Molecular content:
TM3 10
POPC 512
CER160 50
SOL 28090
NA 85
CL 75 Additional information:
...

Simulation CER160_50_POPC_512_TM3_10_5up_5down_NaCl_150mM_310K (rep1)

Hector Martinez-Seara
Title publication: A Ceramide-Regulated Element in the Late Endosomal Protein LAPTM4B Controls Amino Acid Transporter Interaction Year publication: 2018 DOI publication: 10.1021/acscentsci.7b00572 Description: Simulation POPC membrane containing ~8 mol% ceramide (CER160) and ten LAPTM4B-TM3 peptides using charmm36 at 310K. MD engine: 2016.2-dev-20170105-4feb0be Force field: charmm36 Temperature: 310 K Pressure: 1 bar Simulation time: 2971 ns Saving frequency: 100 ps Molecular content:
TM3 10
POPC 512
CER160 50
SOL 28090
NA 85
CL 75 Additional information:
...

#nowplaying-RS: A New Benchmark Dataset for Building Context-Aware Music Recommender Systems

Asmita Poddar, Eva Zangerle & Yi-Hsuan Yang
Music recommender systems can offer users personalized and contextualized recommendation and are therefore important for music information retrieval. An increasing number of datasets have been compiled to facilitate research on different topics, such as content-based, context-based or next-song recommendation. However, these topics are usually addressed separately using different datasets, due to the lack of a unified dataset that contains a large variety of feature types such as item features, user contexts, and timestamps. To address...

(all datasets) MMETSP re-assemblies

Lisa K. Johnson, Harriet Alexander & C. Titus Brown
Data from all MMETSP id combined into one file. Transcriptome assembly fasta files: mmetsp_dib_trinity_zenodo.tar.gz The Marine Microbial Eukaryotic Transcriptome Sequencing Project (MMETSP) data set contains cultured samples of pelagic and endosymbiotic marine eukaryotic species representing more than 40 phyla (Keeling et al. 2014). Methods for the de novo transcriptome assembly are described in the Eel pond khmer protocols (Brown et al. 2015). Scripts available on github: https://github.com/dib-lab/dib-MMETSP References: C. Titus Brown, Camille Scott, and Leigh...

Nanopore sequence analysis - Galaxy Training Material

Willem de Koning
Twelve MDR plasmids harboring samples were prepared according to the MinION library construction protocols, followed by library sequencing. After 8 hours of sequencing run, a total of 287 725 reads ranging from dozens to tens of thousands of bases in length were obtained, covering a total of 493 Mbp. The raw data were subjected to several stages of processing, including basecalling, de-multiplexing, fasta sequence extraction. For this tutorial one out of the twelve samples is...

Simulation CER160_9_POPC_512_TM3_10_5up_5down_NaCl_150mM_310K (rep4)

Hector Martinez-Seara
Title publication: A Ceramide-Regulated Element in the Late Endosomal Protein LAPTM4B Controls Amino Acid Transporter Interaction Year publication: 2018 DOI publication: 10.1021/acscentsci.7b00582 Description: Simulation POPC membrane containing ten LAPTM4B-TM3 peptides and 9 ceramide (CER160) originally in the water phase using charmm36 at 310K. MD engine: 2018 Force field: charmm36 Temperature: 310 K Pressure: 1 bar Simulation time: 648 ns Saving frequency: 100 ps Molecular content: TM3 10
POPC 512
CER160 9
SOL 34248
NA 102
...

Simulation CER160_9_POPC_512_TM3_10_5up_5down_NaCl_150mM_310K (rep4)

Hector Martinez-Seara
Title publication: A Ceramide-Regulated Element in the Late Endosomal Protein LAPTM4B Controls Amino Acid Transporter Interaction Year publication: 2018 DOI publication: 10.1021/acscentsci.7b00582 Description: Simulation POPC membrane containing ten LAPTM4B-TM3 peptides and 9 ceramide (CER160) originally in the water phase using charmm36 at 310K. MD engine: 2018 Force field: charmm36 Temperature: 310 K Pressure: 1 bar Simulation time: 648 ns Saving frequency: 100 ps Molecular content: TM3 10
POPC 512
CER160 9
SOL 34248
NA 102
...

Large Language Model

Gregory Diamos & Mostofa
One of the large language models trained in this paper: https://arxiv.org/abs/1810.10045

Large Language Model

Gregory Diamos & Mostofa
One of the large language models trained in this paper: https://arxiv.org/abs/1810.10045

OpenCTR

Jamie Zhu
OpenCTR: a collection of datasets for benchmarking CTR prediction models. See more at https://github.com/anyai/OpenCTR.

Daily hydro power time series (1979-2016) for 43 Chinese reservoir hydro stations

Hailiang Liu, Gorm Bruun Andresen, Tom Brown & Martin Greiner
This is the hydro time series used in the article The role of hydro power, storage and transmission in the decarbonization of the Chinese power system https://doi.org/10.1016/j.apenergy.2019.02.009 Their calculations are detailed in this article: https://doi.org/10.1016/j.mex.2019.05.024 -------------------------------------------- dams_large.csv lists the names, coordinates, provinces, historical yearly inflows, historical water consumption rate and historical yearly electricity generation of the reservoir stations. reservoir_effective_capacity.pickle contains the effective capacity for the reservoirs. daily_hydro_inflow_per_dam_1979_2016_m3.pickle and daily_hydro_inflow_per_dam_1979_2016_GWh.pickle contains the daily hydro inflow time...

Registration Year

  • 2018
    23,922

Resource Types

  • Dataset
    23,922

Data Centers

  • Zenodo
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