35,730 Works

Supplementary material S2

Data from: Life-history QTLs and natural selection on flowering time in Boechera stricta, a perennial relative of Arabidopsis

Jill Theresa Anderson, Cheng-Ruei Lee & Thomas Mitchell-Olds
Plants must precisely time flowering to capitalize on favorable conditions. Although we know a great deal about the genetic basis of flowering phenology in model species under controlled conditions, the genetic architecture of this ecologically-important trait is poorly understood in non-model organisms. Here, we evaluated the transition from vegetative growth to flowering in Boechera stricta, a perennial relative of Arabidopsis thaliana. We examined flowering time QTLs using 7,920 recombinant inbred individuals, across seven lab and...

Hansen et al 2010 MEC.xlsx

Michael Hansen, Kristian Meier & Karen-Lise Mensberg
Brown trout microsatellite data (61 loci). The data set consists of samples from three wild brown trout populations in Western Jutland, Denmark, along with samples from two hatchery strains used for stocking. The samples of wild trout populations consist of contemporary samples (2000-2006). Moreover, two of the populations are also represented by historical samples from 1943-1956. See Hansen et al. (2010) for further details. The data file is in MSA format [Dieringer D, Schlotterer C...

Cerchio and Tucker Data Matrix: MALIGN.124.05

Salvatore Cerchio, Priscilla Tucker, Salvatore Cerchio & Priscilla Tucker

Cerchio and Tucker Data Matrix: MALIGN.124.06

Salvatore Cerchio, Priscilla Tucker, Salvatore Cerchio & Priscilla Tucker

Cerchio and Tucker Data Matrix: MALIGN.136.10

Salvatore Cerchio & Priscilla Tucker

Cerchio and Tucker Data Matrix: Conservative-2

Salvatore Cerchio, Priscilla Tucker, Salvatore Cerchio & Priscilla Tucker

Salter Data Set

Laura A. Salter & Laura A. Salter

Waggoner Appendix

Benjamin M. Waggoner & Benjamin M. Waggoner

Thorpe et al Data Set

Roger S. Thorpe, Heather Black, Anita Malhotra, Roger S. Thorpe, Heather Black & Anita Malhotra

5S Short (for 5S Long)

Roberta J. Mason-Gamer, Elizabeth A. Kellogg, Roberta J. Mason-Gamer & Elizabeth A. Kellogg

5s Long and cpDNA

Roberta J. Mason-Gamer, Elizabeth A. Kellogg, Roberta J. Mason-Gamer & Elizabeth A. Kellogg

5S Long and 5S Short

Roberta J. Mason-Gamer, Elizabeth A. Kellogg, Roberta J. Mason-Gamer & Elizabeth A. Kellogg

ITS (for 5S Short)

Roberta J. Mason-Gamer, Elizabeth A. Kellogg, Roberta J. Mason-Gamer & Elizabeth A. Kellogg

mtDNA Data Set

Tom A. Titus, Allan Larson, Tom A. Titus & Allan Larson

Brochu Data Set

Christopher A. Brochu & Christopher A. Brochu

Lutzoni Data Set

Fran├žois M. Lutzoni & Fran├žois M. Lutzoni

Sullivan Data Set

Jack Sullivan, Jeffrey A. Markert, C. William Kilpatrick, Jack Sullivan, Jeffrey A. Markert & C. William Kilpatrick

Baker and DeSalle Data Set

Richard H. Baker, Rob DeSalle, Richard H. Baker & Rob DeSalle

Friedrich Data Set

Markus Friedrich, Diethard Tautz, Markus Friedrich & Diethard Tautz

Appendix 2-3

John J. Wiens & Tonya A. Penkrot

Data from: Matrix correspondence tests on the DNA phylogeny of the Tenerife lacertid elucidate both historical causes and morphological adaptation

Roger S. Thorpe, Heather Black & Anita Malhotra
Previous studies using partial regression Mantel tests of matrix correspondence on within-island geographic variation in the color pattern of the Tenerife (Canary Islands) lacertid lizard (Gallotia galloti) support natural selection for different north--south climatically determined biotopes but do not support any historical cause. However, tests on the DNA phylogeny based primarily on population data from 57 localities on Tenerife support the hypothesis that there were populations on two putative precursor islands that have come into...

Data from: Influence of alignment on the mtDNA phylogeny of Cetacea: questionable support for a Mysticeti/Physeteroidea clade

Salvatore Cerchio & Priscilla Tucker
Cerchio and Tucker Data Matrix: MALIGN.124.08MALIGN.124.08Cerchio and Tucker Data Matrix: MilinkovitchMilinkovitch.htmCerchio and Tucker Data Matrix: MALIGN.124.07MALIGN.124.07Cerchio and Tucker Data Matrix: MALIGN.124.10MALIGN.124.10Cerchio and Tucker Data Matrix: ClustalClustal.htmCerchio and Tucker Data Matrix: MALIGN.136.02MALIGN.136.02Cerchio and Tucker Data Matrix: MALIGN.124.09MALIGN.124.09Cerchio and Tucker Data Matrix: Conservative-1Conservative-1.htmCerchio and Tucker Data Matrix: Conservative-2Conservative-2.htmCerchio and Tucker Data Matrix: MALIGN.111.02MALIGN.111.02Cerchio and Tucker Data Matrix: MALIGN.111.01MALIGN.111.01Cerchio and Tucker Data Matrix: MALIGN.124.03MALIGN.124.03Cerchio and Tucker Data Matrix: MALIGN.136.06MALIGN.124.06Cerchio and Tucker Data Matrix: MALIGN.136.03MALIGN.136.03Cerchio and Tucker Data Matrix:...

Data from: Molecular phylogenetics of desmognathine salamanders (Caudata: Plethodontidae): a reevaluation of evolution in ecology, life history, and morphology

Tom A. Titus & Allan Larson
Phylogenetic relationships were reconstructed for salamanders of the plethodontid subfamily Desmognathinae to examine evolution of morphology, ecology, and life history. Mitochondrial DNA sequences encoding 12S and 16S ribosomal RNA and the valine transfer RNA provided 259 phylogenetically informative sites from approximately 1,200 nucleotide positions for 21 specimens representing 15 species and subspecies. These data were analyzed in conjunction with 13 morphological and reproductive characters to generate phylogenetic hypotheses. The directly developing terrestrial desmognathines Phaeognathus hubrichti...

Data from: Parallel evolution of nonfeeding larvae in echinoids

Gregory A. Wray
The switch from feeding to nonfeeding larvae is an ecologically important transformation that has evolved on several separate occasions within the echinoids. In each case, this life history transformation has been accompanied by extensive changes in larval morphology. A phylogenetic approach is used here to reconstruct these morphological changes, to begin asking why they have taken the particular forms observed, and to assess the degree of parallel transformation in separate cases. Both traditional character mapping...

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  • North Carolina State University
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  • Royal Botanic Gardens
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  • University of St Andrews
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