Collection ID: DK_TR001-1L | Taxon: Centaurea diffusa Lam. | Common name: Diffuse knapweed | Collection locality: Kirklarelì, Turkey (latitude 41.45, longitude 27.14) | Plant tissues employed for EST library development: Leaves | Library type: Normalized, double-stranded | Sequence type: 454

Collection ID: Hann_ISI | Taxon: Helianthus annuus L. | Common name: Common sunflower | Collection locality: Ma'ayan Tzvi, Israel (latitude 32.33, longitude 34.56) | Plant tissues employed for EST library development: Seedlings | Library type: Normalized, double-stranded | Sequence type: 454

Collection ID: NW-22-1-M | Taxon: Cirsium arvense (L.) Scop. | Common name: Canada thistle | Collection locality: Female plant, Fargo, ND, USA (latitude 46.93, longitude -96.86) | Plant tissues employed for EST library development: Roots, Leaves, Flower buds, Mature flowers | Library type: Normalized, double-stranded | Sequence type: 454

sample information

MtDNA based phylogenetic reonstruction for each genus hypothesized from Bayesian analysis. Supports are indicated as follows: Bayesian analysis posterior probabilies*100 and maximum parsimony bootstap values in %. Lineage locations are coded as follows FG=French Guiana, AP=Amapá, SUR=Suriname, GUY=Guyana, PA=Parà, AM=Amazonas, MT=Mato Grosso, N=North, W=West, E=East, S=South, Cr=Center. The bolded area names indicate localities outside the GS.

FASTA-formatted text file of UCE-anchored probe sequences, designed from UCEs identified across Reptiles (birds and lizard). We (1) aligned these sequences to extant primate genomic sequences and (2) used synthetic oligos identical to a subset of these sequences to enrich target DNA in birds. Fasta header gives probes location relative to chromosomes of galGal3 (UCSC).

BZIP2 archive of NEXUS-formatted file alignments generated, on a locus-by-locus basis, from FASTA sequences in birds-uce-anchored-loci.

TAB-delimited LASTZ output from matches of probes in all-probes.fasta to the vertebrate genomes in Supplementary Table 1. We parsed this file to remove duplicates. We archived results for non-duplicated matches in probe-matches-to-taxa.sqlite.

A facile and efficient enantioselective synthesis of flor­fenicol starting from commercially available 4-methylthiobenzaldehyde is described. Key features of the synthesis include a one-step oxidation of allyl and thioether groups in allylic alcohol to form (2S,3S)-epoxide under Sharpless epoxidation conditions and a highly efficient conversion of (1R,2R)-azide into amino alcohol via debenzylation and reduction of an azido moiety in one-pot operation.

Maximum likelihood tree based on the K81uf + I model for Foudia CHD1Z data.

Microsatelites data and mean phenotypic data (body mass and RMR) for weasels Mustela nivalis captured in Bialowieza Forest, Poland.

Bayesian analysis of Foudia mitochondrial ATPase6, ATPase8 and ND3 data. Consensus of the last 35,000 trees after 4 million generations based on the GTR+I model. Bayesian branch support values are indicated below bootstrap values (heuristic search, 1000 replicates) from a ML tree constructed using the TrN+I model.

Has genotypes for all 11 loci assayed for all individuals in this study. Individuals are identified by easting & northing and by the population in which they are located.

Assembled transcriptome for Lampropholis coggeri, the Northern lineage. The transcripts are annotated both with respect to (1) the known gene they match (if any) and (2) the UTR, CDS of the gene.

Supporting information. Additional background on hypotheses, methods and results.

This data file contains phenotype, genotype and linkage data for 550 F2 individuals resulting from an interspecific cross between C. grandiflora and C. rubella. The individuals were phenotyped in the greenhouse.

This file contains phenotype data for 16 samples of Capsella rubella and Capsella grandiflora. Phenotype designations are as in the README file for the F2 data file in this submission.

PRISMA checklist

Supplementary materials. Quality assessment and data extraction for included studies; qualitative findings, and example search strategy.

Microsatellite data set