Data and code used for publication "Developmental control of convergent floral pigmentation across evolutionary timescales, Larter, Maximilian, Dunbar-Wallis, Amy, Berardi, Andrea E., Smith, Stacey D.".
Please see README file.
Data for the vernalization experiment
A .csv file giving the GPS coordinates of each collecting site and subsite.
An .Rdata file containing the Stan model fit results for all 5 cline models for the 2015 collections.
KEGG pathway analysis of differentially expressed genes from GRN modules
Image regions analyzed in Figure 5C
Assembled transcriptome of Diopisthoporus longitubus from SRA SRX1534056 using Trinity (https://github.com/trinityrnaseq/trinityrnaseq/wiki).
Assembled transcriptome of Hofstenia miamia from SRA SRX503688 using Trinity (https://github.com/trinityrnaseq/trinityrnaseq/wiki).
Assembled transcriptome of Meara stichopi from SRA SRX1343814 using Trinity (https://github.com/trinityrnaseq/trinityrnaseq/wiki).
Assembled transcriptome of Sterreria sp. from SRA SRX1343821 using Trinity (https://github.com/trinityrnaseq/trinityrnaseq/wiki).
Original data for this GIS raster was obtained from the ESA CCI Land Cover Layer 300m 2015 (www.esa-landcover-cci.org). We first reclassified the original data layer, denoting mosaic cropland and native vegetation habitat as present (1) or absent (0). We then used FRAGSTATS (McGarigal, Cushman, Neel, & Ene, 2012) to calculate the percent of the landscape occupied by mosaic habitat within a 1km-radius moving window. We re-sampled the source data from its native 300m resolution to...
This GIS raster layer is the projected multi-scale habitat suitability model for the mainland clouded leopard, based on beta coefficients of the GLMM and a mean of 79.47 camera trap nights averaged across all camera stations. Model projection units are number of clouded leopard observations predicted across multivariate niche space, given 79.47 active camera trap nights. Thus the specific output value is of little importance; the model output should rather be interpreted on a relative...
R script to run the analyses included in the paper, using the phylogenetic trees and species trait dataset as inputs.
Measurements of feeding efficiency after different lesion conditions
Alignment of complete plastid genomes for eight samples in Fabaceeae (Ladeania lanceolata, Pediomelum argophylum, (2) Pediomelum digitatum, Pediomelum esculentum, (3) Pediomelum tenuiflorum)
Data from: Birds land reliably on complex surfaces by adapting their foot-surface interactions upon contactWilliam R. T. Roderick, Diana D. Chin, Mark R. Cutkosky & David Lentink
Location data from Arctic terns, calculated from light level geolocation data. Data from one individual bird per tab. Locations calculated by using IntiProc software (Migrate Technology Ltd).
Light level data from geolocators. ZIP archive, with files from each individual bird. Naming of files corresponds to designation in Table 1. Data files are to be processed by IntiProc software (Migrate Technology Ltd)
EDX live map. Elemental composition of Icriodus sp. with basal tissue (NHMW 2018/0147/0001, sample BL-12-29c, Blankenheim section, Eifel area, Germany).
Short movie of the multi-colour rendered reconstruction of tunnel systems of invading microorganisms constricted to the basal body of the coniform specimen NHMW 2018/0146/0001. (D) Close-up of (C), showing entry-position and orientation of tunnels.
Synchrotron raw data of the coniform specimen NHMW 2018/0146/0001 (tiff files: 513–1024).
Inferred tetraploid genotypes, using the MAC-PR method (Esselink et al. 2004).
Imperial College London1,155
Bank of Canada104
International Institute of Tropical Agriculture95
//ror.org/02gfys938:University of Manitoba95
University of California, Davis87
International Institute of Tropical Agriculture83
University of California, Berkeley70
Centre for Ecology & Hydrology69
Chinese Academy of Sciences66
French National Centre for Scientific Research63