87,160 Works

Release 2 annotations and () were merged to create an expanded () gene model

Sima Misra, Madeline A Crosby, Christopher J Mungall, Beverley B Matthews, Kathryn S Campbell, Pavel Hradecky, , Joshua S Kaminker, Gillian H Millburn, Simon E Prochnik, Christopher D Smith, Jonathan L Tupy, Eleanor J Whitfield, Leyla Bayraktaroglu, Benjamin P Berman, Brian R Bettencourt, Susan E Celniker, Aubrey DNJ De Grey, Rachel A Drysdale, , John Richter, Susan Russo, Andrew J Schroeder, ShengQiang Shu, Mark Stapleton … & Suzanna E Lewis
Copyright information:Taken from "Annotation of the euchromatic genome: a systematic review"Genome Biology 2002;3(12):research0083.1-83.22.Published online 31 Dec 2002PMCID:PMC151185.Copyright © 2002 Misra et al., licensee BioMed Central Ltd Only evidence (black panel) directly used to annotate the gene model (cyan panel) is shown. Alignments of ESTs and cDNA sequence reads (light green) and an assembled full-insert cDNA clone sequence (dark green) support the merger of the Release 2 annotation (light blue) and the adjacent gene, (light blue),...

Density distribution of base-pairs in CSEs, Sanger Center annotated exons and positive oligonucleotide probes in human chromosome 22

, & Michael Q Zhang
Copyright information:Taken from "Computational comparison of two mouse draft genomes and the human golden path"Genome Biology 2002;4(1):R1-R1.Published online 5 Dec 2002PMCID:PMC151282.Copyright © 2002 Xuan et al., licensee BioMed Central Ltd Density is calculated by counting the number of base-pairs in CSEs, exons and positive probes within a 57-kb window.

ELISA for the presence of secreted Gro-1 chemokine in supernatants of subconfluent and polarized Caco-2 monolayers

David N Baldwin, Veena Vanchinathan, Patrick O Brown & Julie A Theriot
Copyright information:Taken from "A gene-expression program reflecting the innate immune response of cultured intestinal epithelial cells to infection by "Genome Biology 2002;4(1):R2-R2.Published online 23 Dec 2002http://www.ncbi.nlm.nih.gov/pmc/articles/PMC151283.Copyright © 2002 Baldwin et al.; licensee BioMed Central Ltd. This is an Open Access article: verbatim copying and redistribution of this article are permitted in all media for any purpose, provided this notice is preserved along with the article's original URL. Subconfluent monolayers infected with wild-type, , and bacteria...

Fingerprinting of the yeast regulatory activity network using Quontology (H

Romeo Lascaris, Harmen J Bussemaker, André Boorsma, Matt Piper, Hans Van Der Spek, Les Grivell & Jolanda Blom
Copyright information:Taken from "Hap4p overexpression in glucose-grown induces cells to enter a novel metabolic state"Genome Biology 2002;4(1):R3-R3.Published online 17 Dec 2002http://www.ncbi.nlm.nih.gov/pmc/articles/PMC151284.Copyright © 2002 Lascaris et al.; licensee BioMed Central Ltd. This is an Open Access article: verbatim copying and redistribution of this article are permitted in all media for any purpose, provided this notice is preserved along with the article's original URL.J.B. and R.L., unpublished work, see Materials and methods). Functional categories are induced (red)...

Genes that show more than twofold induction in the overexpression dataset can be divided in two distinct groups using k-means clustering analysis (Cluster software )

Romeo Lascaris, Harmen J Bussemaker, André Boorsma, Matt Piper, Hans Van Der Spek, Les Grivell & Jolanda Blom
Copyright information:Taken from "Hap4p overexpression in glucose-grown induces cells to enter a novel metabolic state"Genome Biology 2002;4(1):R3-R3.Published online 17 Dec 2002http://www.ncbi.nlm.nih.gov/pmc/articles/PMC151284.Copyright © 2002 Lascaris et al.; licensee BioMed Central Ltd. This is an Open Access article: verbatim copying and redistribution of this article are permitted in all media for any purpose, provided this notice is preserved along with the article's original URL. The gene-expression profile of overexpressing cellswas compared to datasets derived from cells that...

Motifs found in upstream regions of genes involved in protein synthesis

Jose L Jiménez, Michael P Mitchell & John G Sgouros
Copyright information:Taken from "Microarray analysis of orthologous genes: conservation of the translational machinery across species at the sequence and expression level"Genome Biology 2002;4(1):R4-R4.Published online 31 Dec 2002http://www.ncbi.nlm.nih.gov/pmc/articles/PMC151285.Copyright © 2002 Jiménez et al.; licensee BioMed Central Ltd. This is an Open Access article: verbatim copying and redistribution of this article are permitted in all media for any purpose, provided this notice is preserved along with the article's original URL. The motif logo and the distribution of...

Procedure for splitting genes of the same functional class into finer subgroups

Jose L Jiménez, Michael P Mitchell & John G Sgouros
Copyright information:Taken from "Microarray analysis of orthologous genes: conservation of the translational machinery across species at the sequence and expression level"Genome Biology 2002;4(1):R4-R4.Published online 31 Dec 2002http://www.ncbi.nlm.nih.gov/pmc/articles/PMC151285.Copyright © 2002 Jiménez et al.; licensee BioMed Central Ltd. This is an Open Access article: verbatim copying and redistribution of this article are permitted in all media for any purpose, provided this notice is preserved along with the article's original URL. See text for details.

Effect of UV cross-linking intensity on retention of unmodified rat 70-mer oligonucleotides

Hong-Ying Wang, Renae L Malek, Anne E Kwitek, Andrew S Greene, Truong V Luu, Babak Behbahani, Bryan Frank, John Quackenbush & Norman H Lee
Copyright information:Taken from "Assessing unmodified 70-mer oligonucleotide probe performance on glass-slide microarrays"Genome Biology 2003;4(1):R5-R5.Published online 6 Jan 2003http://www.ncbi.nlm.nih.gov/pmc/articles/PMC151289.Copyright © 2003 Wang et al.; licensee BioMed Central Ltd. This is an Open Access article: verbatim copying and redistribution of this article are permitted in all media for any purpose, provided this notice is preserved along with the article's original URL. The 70-mer oligonucleotides (50 μM) were printed onto TeleChem SuperAmine slides that were subjected to different...

The role of oligonucleotide concentration on microarray hybridization measurements

Hong-Ying Wang, Renae L Malek, Anne E Kwitek, Andrew S Greene, Truong V Luu, Babak Behbahani, Bryan Frank, John Quackenbush & Norman H Lee
Copyright information:Taken from "Assessing unmodified 70-mer oligonucleotide probe performance on glass-slide microarrays"Genome Biology 2003;4(1):R5-R5.Published online 6 Jan 2003http://www.ncbi.nlm.nih.gov/pmc/articles/PMC151289.Copyright © 2003 Wang et al.; licensee BioMed Central Ltd. This is an Open Access article: verbatim copying and redistribution of this article are permitted in all media for any purpose, provided this notice is preserved along with the article's original URL. Comparison of hybridization intensities of seven genes detected by oligonucleotides printed at different concentrations. Corresponding PCR...

Gene organization (not to scale) around the locus of and the putative loci of and

Simon Wong, Mario A Fares, Wolfgang Zimmermann, Geraldine Butler & Kenneth H Wolfe
Copyright information:Taken from "Evidence from comparative genomics for a complete sexual cycle in the 'asexual' pathogenic yeast "Genome Biology 2003;4(2):R10-R10.Published online 23 Jan 2003http://www.ncbi.nlm.nih.gov/pmc/articles/PMC151300.Copyright © 2003 Wong et al.; licensee BioMed Central Ltd. This is an Open Access article: verbatim copying and redistribution of this article are permitted in all media for any purpose, provided this notice is preserved along with the article's original URL. Dashed horizontal lines indicate the extents of the clones sequenced.

( and ) The chimera dimerizes and alterations of the stem IIIa and stem IIIb in the pseudoknot structure do not inhibit its dimerization

Delphine T. Marie-Egyptienne, Maria Antonietta Cerone, & Chantal Autexier
Copyright information:Taken from "A human- pseudoknot chimeric telomerase RNA reconstitutes a nonprocessive enzyme that is defective in telomere elongation"Nucleic Acids Research 2005;33(17):5446-5457.Published online 28 Sep 2005PMCID:PMC1236975.© The Author 2005. Published by Oxford University Press. All rights reserved Representative results of dimerization for htTR mutants are shown. M and D correspond to monomer and dimer positions, respectively. (B) Quantification of the dimerization results for the htTR mutants. A minimum of three independent experiments was performed for...

Schematic of the ArrayOligoSelector oligonucleotide-selection algorithm

, , Marcin P Joachimiak, Fred E Cohen, Brian Pulliam & Joseph L DeRisi
Copyright information:Taken from "Expression profiling of the schizont and trophozoite stages of with a long-oligonucleotide microarray"Genome Biology 2003;4(2):R9-R9.Published online 31 Jan 2003http://www.ncbi.nlm.nih.gov/pmc/articles/PMC151308.Copyright © 2003 Bozdech et al.; licensee BioMed Central Ltd. This is an Open Access article: verbatim copying and redistribution of this article are permitted in all media for any purpose, provided this notice is preserved along with the article's original URL. Oligonucleotide selection begins with the collection of all possible 70 mer oligonucleotides...

Species tree showing the distribution of FG-GAP proteins in bacteria according to Pfam 7

Corin Yeats, Stephen Bentley & Alex Bateman
Copyright information:Taken from "New Knowledge from Old: discovery of novel protein domains in "BMC Microbiology 2003;3():3-3.Published online 6 Feb 2003http://www.ncbi.nlm.nih.gov/pmc/articles/PMC151604.Copyright © 2003 Yeats et al; licensee BioMed Central Ltd. This is an Open Access article: verbatim copying and redistribution of this article are permitted in all media for any purpose, provided this notice is preserved along with the article's original URL.5. The broad distribution indicates that more thorough searching may find them to be ubiquitous.

Serial changes in right ventricular ejection fraction and end-diastolic volume index during septic shock in humans

Olivier Court, , Joseph E Parrillo & Anand Kumar
Copyright information:Taken from "Clinical review: Myocardial depression in sepsis and septic shock"Critical Care 2002;6(6):500-508.Published online 12 Sep 2002PMCID:PMC153435.Copyright © 2002 BioMed Central Ltd Mean initial and final right ventricular ejection fractions for survivors (closed circles, < 0.001) and nonsurvivors (open circles, < 0.001). Mean initial and final right ventricular end-diastolic volume index for survivors (closed circles, < 0.05) and nonsurvivors (open circles, = not significant). The right ventricle, similar to the left ventricle, undergoes dilation...

Mean coronary sinus blood flow (CSBF) in seven patients with septic shock compared with normal subjects

Olivier Court, , Joseph E Parrillo & Anand Kumar
Copyright information:Taken from "Clinical review: Myocardial depression in sepsis and septic shock"Critical Care 2002;6(6):500-508.Published online 12 Sep 2002PMCID:PMC153435.Copyright © 2002 BioMed Central Ltd Flow measurements were stratified into heart rates above and below 100 beats/min. Coronary blood flow in septic shock patients equaled (heart rate 100 beats/min) coronary blood flow in control patients. Reproduced with permission from [].

The effect of serum from septic shock patients and control groups on the extent of myocardial cell shortening of spontaneously beating rat heart cells

Olivier Court, , Joseph E Parrillo & Anand Kumar
Copyright information:Taken from "Clinical review: Myocardial depression in sepsis and septic shock"Critical Care 2002;6(6):500-508.Published online 12 Sep 2002PMCID:PMC153435.Copyright © 2002 BioMed Central Ltd Septic shock patients during the acute phase demonstrated a statistically significant lower extent of shortening ( < 0.001) compared with any other group. Reproduced with permission from [].

A schematic outline of the acquisition, reduction, and loss of genomes and compartments during evolution

John A Raven & John F Allen
Copyright information:Taken from "Genomics and chloroplast evolution: what did cyanobacteria do for plants?"Genome Biology 2003;4(3):209-209.Published online 3 Mar 2003PMCID:PMC153454.Copyright © 2003 BioMed Central Ltd Black arrows indicate evolutionary pathways; white arrows indicate endosymbiotic events in the host cell. Endosymbiotic event 1 occurred at the origin of eukaryotes. The proteobacterial endosymbiont gave rise to mitochondria (the smaller organelles in the bottom part of the diagram). Endosymbiotic event 2 occurred at the origin of plastid-containing cells. Endosymbiotic...

Cumulative -value distributions for each tag comparison made between SAGE libraries in the study

Seth Blackshaw, Winston P Kuo, Peter J Park, , Jenny M Gunnersen, Hamish S Scott, , & Constance L Cepko
Copyright information:Taken from "MicroSAGE is highly representative and reproducible but reveals major differences in gene expression among samples obtained from similar tissues"Genome Biology 2003;4(3):R17-R17.Published online 18 Feb 2003http://www.ncbi.nlm.nih.gov/pmc/articles/PMC153457.Copyright © 2003 Blackshaw et al.; licensee BioMed Central Ltd. This is an Open Access article: verbatim copying and redistribution of this article are permitted in all media for any purpose, provided this notice is preserved along with the article's original URL. Monte Carlo analysis using binomial distribution...

Representative northern blot analyses of stress-modulated genes using cloned cDNA fragments from the SSH libraries

, , Nancy Eckardt, , Angel Guevara-Garcia, Philip Day, Ramesh Raina & Nina V Fedoroff
Copyright information:Taken from "Characterizing the stress/defense transcriptome of "Genome Biology 2003;4(3):R20-R20.Published online 18 Feb 2003http://www.ncbi.nlm.nih.gov/pmc/articles/PMC153460.Copyright © 2003 Mahalingam et al.; licensee BioMed Central Ltd. This is an Open Access article: verbatim copying and redistribution of this article are permitted in all media for any purpose, provided this notice is preserved along with the article's original URL. Acute ozone treatment; comparison of treatment with salicylic acid, virulent bacteria or avirulent bacteria; chronic ozone treatment; treatment with...

Hierarchical cluster analysis of the genes on the basis of expression patterns

Shizuko Muro, Ichiro Takemasa, Shigeyuki Oba, Ryo Matoba, Noriko Ueno, , Riu Yamashita, Mitsugu Sekimoto, Hirofumi Yamamoto, Shoji Nakamori, , Shin Ishii &
Copyright information:Taken from "Identification of expressed genes linked to malignancy of human colorectal carcinoma by parametric clustering of quantitative expression data"Genome Biology 2003;4(3):R21-R21.Published online 27 Feb 2003http://www.ncbi.nlm.nih.gov/pmc/articles/PMC153461.Copyright © 2003 Muro et al.; licensee BioMed Central Ltd. This is an Open Access article: verbatim copying and redistribution of this article are permitted in all media for any purpose, provided this notice is preserved along with the article's original URL. A total of 1,536 genes are aligned...

Expression of TCL (tumor-classifier) genes was correlated with the malignant potential of colorectal cancer

Shizuko Muro, Ichiro Takemasa, Shigeyuki Oba, Ryo Matoba, Noriko Ueno, , Riu Yamashita, Mitsugu Sekimoto, Hirofumi Yamamoto, Shoji Nakamori, , Shin Ishii &
Copyright information:Taken from "Identification of expressed genes linked to malignancy of human colorectal carcinoma by parametric clustering of quantitative expression data"Genome Biology 2003;4(3):R21-R21.Published online 27 Feb 2003http://www.ncbi.nlm.nih.gov/pmc/articles/PMC153461.Copyright © 2003 Muro et al.; licensee BioMed Central Ltd. This is an Open Access article: verbatim copying and redistribution of this article are permitted in all media for any purpose, provided this notice is preserved along with the article's original URL. Results used the 100 cancer and 11...

Representative Osprey network with genes colored by GO process and interactions colored by experimental system

, Chris Stark & Mike Tyers
Copyright information:Taken from "Osprey: a network visualization system"Genome Biology 2003;4(3):R22-R22.Published online 27 Feb 2003http://www.ncbi.nlm.nih.gov/pmc/articles/PMC153462.Copyright © 2003 Breitkreutz et al.; licensee BioMed Central Ltd. This is an Open Access article: verbatim copying and redistribution of this article are permitted in all media for any purpose, provided this notice is preserved along with the article's original URL.

Comparison of the chorda tympani (open circles, dashed line) and glossopharyngeal nerves (black circles, solid line) responses to salts and acids

& Göran Hellekant
Copyright information:Taken from "Comparison of the responses of the chorda tympani and glossopharyngeal nerves to taste stimuli in C57BL/6J mice"BMC Neuroscience 2003;4():5-5.Published online 4 Mar 2003http://www.ncbi.nlm.nih.gov/pmc/articles/PMC153500.Copyright © 2003 Danilova and Hellekant; licensee BioMed Central Ltd. This is an Open Access article: verbatim copying and redistribution of this article are permitted in all media for any purpose, provided this notice is preserved along with the article's original URL. Maximum amplitude (B) was used as a parameter....

Degradation of 2,4,6-trinitrotoluene (TNT) by potassium ferrate in the presence and absence of sand

Ronald L Crawford, Andrzej Paszczynski & Lisa Allenbach
Copyright information:Taken from "Potassium ferrate [Fe(VI)] does not mediate self-sterilization of a surrogate mars soil"BMC Microbiology 2003;3():4-4.Published online 6 Mar 2003http://www.ncbi.nlm.nih.gov/pmc/articles/PMC153549.Copyright © 2003 Crawford et al; licensee BioMed Central Ltd. This is an Open Access article: verbatim copying and redistribution of this article are permitted in all media for any purpose, provided this notice is preserved along with the article's original URL. The 5 mg of ferrate used removed about 10 mg of TNT. The...

Amino acid changes in the human XPD and budding yeast Rad3 helicases that lead to phenotypic changes

David J. Garfinkel & Adam M. Bailis
Copyright information:Taken from "Nucleotide Excision Repair, Genome Stability, and Human Disease: New Insight from Model Systems"Journal of Biomedicine and Biotechnology 2002;2(2):55-60.Published online Jan 2002PMCID:PMC153785.Copyright © 2002, Hindawi Publishing Corporation The primary amino acid sequences of human XPD and yeast Rad3 are represented by the black bar. The seven conserved helicase domains are represented by white boxes and are named according to the accepted nomenclature []. The positions of these domains in the primary sequence are...

Registration Year

  • 2012
    87,160

Resource Types

  • Image
    87,160