57 Works

Xenorhabdus nematophila RelE toxin

Bacterial chromosomal ‘toxin-antitoxin systems’ (TA systems) are involved in various cell functions such as stress response, promoting cell cycle arrest and bringing about the onset of programmed cell death. Unlike RelBE TA module of Escherichia coli, genome of Xenorhabdus nematophila has two separate TA modules for RelB and RelE. Here RelE being the toxin bears its own antitoxin and RelB antitoxin bears its separate toxin counterpart. More interestingly these modules are located distantly in genome....

Tobacco calmodulin-like protein rgs-CaM in silico model with calcium ions loaded in calcium binding loops A and D (rgs-CaM+Ca-A-D)

Tobbaco calmodulin-like protein rgs-CaM displays three functional calcium binding sites that dissociations constants were not in the range of calcium sensors. Here, we show the in silico model of rgs-CaM with calcium ions modeled on calcium binding loops A and D.

Modelling Land Use Change in Brazil:2000-2050 (Dataset)

G. Camara, A. Soterroni, F. Ramos, A. Carvalho, P. Andrade, R.S. Souza, A. Mosnier, R. Mant, M. Buurman, M. Pena, P. Havlik, J. Pirker, F. Kraxner, M. Obersteiner, V. Kapos, A. Affonso, G. Espindola & G. Bocqueho
The input and output land cover dataset across all modelled time periods (2000-2050) and scenarios resulting from the work of the REDD-PAC project in Brazil. Please consult the data section of the REDD-PAC website (http://redd-pac.org/new_page.php?contents=data1.csv) to access a data visualization tool and to obtain the dataset in WFS format. This dataset can be accessed and displayed using GIS software such as QGIS. Please consult the metadata file for further instructions

Data Services Products: WUS-CAMH-2015, 3D shear-wave velocity model of the western United States

Fats cViP3.1

3D human model

Population Head Model Repository V1.0

R. L. Hadimani Erik G. Lee
Collection of 50 de-identified head models

MODFLOW datasets for simulations of groundwater flow with downscaled global climate model data for the Suwannee River Basin, Florida

Eric D. Swain
MODFLOW model of the Suwannee River Basin developed to simulate groundwater flow with downscaled global climate model data. Datasets include input and output files, model code, and macros to process input and output.

MODFLOW-NWT model used to evaluate the potential effect of groundwater pumpage and increased sea level on canal leakage and regional groundwater flow in Miami-Dade County, Florida: U.S. Geological Survey Data Release

Joseph D. Hughes & Jeremy T. White
A three-dimensional, surface-water/groundwater model (MODFLOW-NWT with the Surface-Water Routing Process) was developed to the predict the effects of groundwater pumpage on canal leakage and regional groundwater flow in urban portions of Miami-Dade County, Florida. The model was calibrated by using observation data collected from 1997 through 2004. The model calibration was verified using observation data collected from 2005 through 2010. The model is designed to simulate surface-water stage and discharge in the managed canal system...

Glenn cViP3.1

3D human model

Billie cViP3.1

3D human model

MODFLOW-NWT model used to assess groundwater availability in the Northern Atlantic Coastal Plain aquifer system from Long Island, New York to North Carolina

A three-dimensional, groundwater flow model was developed with the numerical code MODFLOW-NWT to represent changes in groundwater pumping and aquifer recharge in the Northern Atlantic Coastal Plain aquifer system from Long Island, New York to North Carolina. The model was constructed using existing hydrogeologic and geospatial information to represent the aquifer system geometry, boundaries, and hydraulic properties of the 19 separate regional aquifers and confining units within the aquifer system. The model was calibrated using...

Coastal Storm Modeling System (CoSMoS) for Southern California, v3.0, Phase 2

Patrick Barnard, Li H. Erikson, Amy Foxgrover, Patrick W Limber, Andrea O'Neill & Sean Vitousek
The Coastal Storm Modeling System (CoSMoS) makes detailed predictions (meter-scale) over large geographic scales (100s of kilometers) of storm-induced coastal flooding and erosion for both current and future sea-level-rise scenarios, as well as long-term shoreline change and cliff retreat. Resulting projections for future climate scenarios (sea-level rise and storms) provide emergency responders and coastal planners with critical storm-hazards information that can be used to increase public safety, mitigate physical damages, and more effectively manage and...

Data Services Products: 3D2016_03Sv, a global Sv wave upper mantle model updated until March 2016

Model Archive- Dam Failure Analysis for the Lago El Guineo Dam, Orocovis, Puerto Rico

Julieta G&Amp
The U.S. Geological Survey, in cooperation with the Puerto Rico Electric Power Authority, completed hydrologic and hydraulic analyses to assess the potential hazard to human life and property associated with the hypothetical failure of the Lago El Guineo Dam. The Lago El Guineo Dam is within the headwaters of the Río Grande de Manatí and impounds a drainage area of about 4.25 square kilometers. The hydrologic assessment was designed to determine the outflow hydrographs and...

LUR Pollution Surfaces

Jonathan Gillespie
LUR NO2 model surfaces for the Greater Glasgow conurbation supporting the publication in EST

MODFLOW-NWT model used to evaluate groundwater/surface-water interactions in the Bad River Watershed, Wisconsin

Michael N. Fienen Andrew T. Leaf
A groundwater-flow model was developed for the Bad River Watershed and surrounding area by using the U.S. Geological Survey (USGS) finite-difference code MODFLOW�NWT. The model simulates steady-state groundwater-flow and base flow in streams by using the streamflow routing (SFR) package. The model was calibrated to groundwater levels and base flows obtained from the USGS National Water Information System (NWIS) database, and groundwater levels obtained from the WDNR and Bad River Band well-construction databases. Calibration was...

Caspase Domain of Separase from C. elegans

Separases are large proteins that mediate sister chromatid disjunction in all eukaryotes. They belong to clan CD of cysteine peptidases and contain a well-conserved C-terminal catalytic protease domain similar to caspases and gingipains. However, unlike other well-characterized groups of clan CD peptidases, there are no high-resolution structures of separases and the details of their regulation and substrate recognition are poorly understood. Here we undertook an in-depth bioinformatical analysis of separases from different species with respect...

Human and mouse Potassium Channels

The Human Brain Project aims at better understanding the function of the mouse and human brains. Potassium channels are central to the function of the brain as they play a crucial role in the generation and control of action potentials. In this framework we have created homology models of the human and mouse potassium channels which provide a structural framework for the study of their function. These models allow us to study the interplay between...

MODFLOW-USG model of groundwater flow in the Wood River Valley aquifer system in Blaine County, Idaho: U.S. Geological Survey Data Release

Jason C. Fisher, James R. Bartolino, Allan H. Wylie, Jennifer Sukow & Michael McVay
A three-dimensional numerical groundwater flow model (MODFLOW-USG) was developed for the Wood River Valley (WRV) aquifer system, south-central Idaho, to evaluate groundwater and surface-water availability at the regional scale. The U.S. Geological Survey (USGS), in cooperation Idaho Department of Water Resources, used the transient groundwater flow model to simulate historical hydraulic head conditions from 1995 to 2010. This USGS data release contains all of the input and output files for the simulation described in the...

Weather Research and Forecasting (WRF) Model

The Weather Research and Forecasting (WRF) Model is a numerical weather prediction system designed for both atmospheric research and operational forecasting purposes. It features two dynamical cores, a data assimilation system, and a software architecture facilitating massively parallel computation and system extensibility. The model serves a wide range of meteorological applications across scales from tens of meters to thousands of kilometers. It has an extensive worldwide user community and is supported by the National Center...

Staphylococcus aureus Capsular Polysaccharide D

A three-step purification of a unique lipase with halo-, solvent-, detergent- and themo-tolerance from Staphylococcus arlettae JPBW-1gave rise a 27-fold purification with a specific activity of 32.5 U/mg. The molecular weight of the purified lipase was estimated to be 45 kDa using SDS–PAGE, whose amino acid sequence was characterized using MALDI-TOF-MS analysis. The sequence obtained from MALDI-TOF-MS showed significant similarity with the capsular polysaccharide biosynthesis protein (CapD) of Staphylococcus auerus. Using biochemical and bioinformatics methods...

Registration Year

  • 2016

Resource Types

  • Model