180 Works

Data for ‘Seismic evidence for partial melt below tectonic plates’ by Debayle et al., (2020)

European part of the Collaborative Seismic Earth Model (CSEM)

Teleseismic S-wave velocity model of the western US

Cultural Life: Figure 3 A,B

Dan C. BACIU

Dataset for numerical modeling to investigate conditions leading to single- or multi-slab plume-induced subduction initiation

Marzieh Baes, Stephan Sobolev, Taras Gerya & Sascha Brune
The data are the numerical modeling results to investigate plume-induced subduction initation on which the figures of the paper "Plume-induced subduction initiation: single- or multi-slab subduction?" by Baes, Sobolev, Gerya and Brune are based. Detailed description on how they are obtained is given in that article (Baes et al., 2020). The naming of the files is based on the number of figures in the paper. Each zipped file contains input files (init.t3c and mode.t3c) and...

SBEM and TEM Membranes (Aug-110)

Matthias Haberl

Calibrated comprehensive model of ROS management improved

Hans Westerhoff, Alexey Kolodkin & Raju Prasad Sharma
RUN the model for steady state. For the Menadione experiment set the initial concentration of 'Menadione' species to experimental dosing i.e. 100 000 nM (0.1 mM) and make the simulation type "reaction" for both the species i.e. 'Menadione' and 'Menadione_internal'. Then run for 24 hr i.e. 1500 minutes approx. Plot e.g. ATP. For H2O2 experimental data validation for repeated treatment at 50uM, 150uM, and 300uM. To run the model with different dosing scenarios, one has...

Calibrated comprehensive model of ROS management Improved

Hans Westerhoff, Alexey Kolodkin & Raju Prasad Sharma
This is a model about a ROS network that exhibits five design principles, and has been calibrated so as to predict quantitatively various steady state concentrations. 10191125. Instructions RUN the model for steady state. For the Menadione experiment set the initial concentration of 'Menadione' species to experimental dosing i.e. 100 000 nM (0.1 mM) and make the simulation type "reaction" for both the species i.e. 'Menadione' and 'Menadione_internal'. Then run for 24 hr i.e. 1500...

framework model v1_5

Hannah Kinmonth-Schultz
Model associated with the following: Hannah A Kinmonth-Schultz, Melissa J S MacEwen, Daniel D Seaton, Andrew J Millar, Takato Imaizumi, Soo-Hyung Kim, An explanatory model of temperature influence on flowering through whole-plant accumulation of FLOWERING LOCUS T in Arabidopsis thaliana, in silico Plants, Volume 1, Issue 1, 2019, diz006, https://doi.org/10.1093/insilicoplants/diz006

East African Rift Temperature and Heat flow model (EARTH)

Darren Jones
A geographic information system (GIS) heat flow and temperature model of East Africa created by extracting data from open sources into a series of shapefiles and rasters containing information on geothermal sites, hot spring locations, digital elevation model, surface temperature, geothermal gradients, thermal conductivities and heat flow data, major faults, surface geology, crustal basement, electrification grid system and population density across East Africa. This data is stored in the World Geodetic System (WGS) 1984 Geographic...

Daisy simulation of Tofteng et al. 2002 column experiment with one artificial biopore

Maja Holbak & Efstathios Diamantopoulos

Mosquée de Marcén

Philippe Sénac
Représentation 3D de la mosquée de Marcén Fichier Bimx

Model of the Rabies virus L terminal de novo initiation complex

A homology-based model of the RABV L terminal de novo initiation complex was generated based on the vesicular stomatitis virus (VSV) L terminal de novo initiation complex (Molecular Archive id: ma-5k432).

Bacillus subtilis YqjX protein

The YolD family (that includes both Bacillus subtilis YolD and YqjX (this model)) is part of the WYL-like superfamily, predicted to have an SH3 β-barrel fold related to Sm domains. In our analysis, among the closest detected structural matches were E. coli YaeO, a Rho-specific inhibitor of transcription termination, and a cyanobacterial Hfq homolog. Model assessment showed that YqjX and YolD sequences are indeed compatible with the SH3 β-barrel structure. Interestingly, UmuD' has an all...

Homology model of ANR from Pseudomonas aeruginosa

Pseudomonas aeruginosa is a deadly opportunistic human pathogen. The organism codes for different virulence factors and among them is HCN synthesized by HCN synthase enzyme. the enzyme is encoded by the hcnABC operon. It is to be noted that the expression of the genes of the hcnABC operon are regulated by LasR, ANR and RhlR proteins. ANR protein belongs to the FNR family. It works in anaerobic condition. It binds to the promoter DNA as...

Multidrug transporter AcrD of E. coli

Resistance-Nodulation-cell Division (RND) transporters AcrB and AcrD of Escherichia coli expel a wide range of substrates out of the cell in conjunction with AcrA and TolC, contributing to the onset of bacterial multidrug resistance. AcrB is the best characterized RND transporter, and its structure has been solved by several labs both without and with bound substrates and inhibitors. AcrD, a close homolog of AcrB, shares an overall sequence identity of nearly 66% (similarity ~80%) but...

Model of the Rabies virus L protein

A homology-based model of the RABV L protein was generated based on the structure of the vesicular stomatitis virus (VSV) L protein (PDB id: 5A22).

Surrogate regression models for computation of time series suspended-sediment concentrations at Muddy Creek above Paonia Reservoir, Anthracite Creek above mouth near Somerset, and North Fork Gunnison below Raven Gulch near Somerset, Colorado

Rodney J Richards & Natalie K Day
This model archive summary documents the surrogate regression model used to compute suspended-sediment concentrations at Muddy Creek above Paonia Reservoir, CO, USGS site number 385903107210800. The methods used follow U.S. Geological Survey (USGS) guidance as referenced in relevant Office of Surface Water Technical Memorandum (TM) 2016.07 and Office of Water Quality TM 2016.10, and USGS Techniques and Methods, book 3, chap. C5 (Landers and others, 2016).

Registration Year

  • 2020
    180

Resource Types

  • Model
    180

Affiliations

  • University of California, Riverside
    5
  • Swiss Federal Institute of Aquatic Science and Technology
    4
  • Deutsche Gesellschaft für Internationale Zusammenarbeit
    4
  • University of Leeds
    4
  • University of Chicago
    2
  • National University of Distance Education
    2
  • University of Cologne
    1
  • British Geological Survey
    1