85,634 Works

Softaware from Systematic identification and annotation of human methylation marks based on bisulfite sequencing methylomes reveals distinct roles of cell type-specific hypomethylation in the regulation of cell identity genes.

Liu H, Liu X, Zhang S, Lv J, Li S, Shang S, Jia S, Wei Y, Wang F, Su J, Wu Q & Zhang Y
Detects the cell type-specific methylation marks by integrating multiple methylomes from human cell lines and tissues. SMART is an entropy-based framework focused on integrating of a large number of DNA methylomes for the de novo identification of cell type-specific MethyMarks. To facilitate the specific methylation analysis, this method dynamically integrates multiple methylomes and identifies the cell type-specific methylation marks.

jcvallve/jc.vallve V1

Jcvallve
supplemental information

jcvallve/jc.vallve V1

Jcvallve
supplemental information

MaxUlysse/compile-latex: 2.3

Maxime Garcia
Switch from fontawesome to fontawesome5

MaxUlysse/compile-latex: 2.3

Maxime Garcia
Switch from fontawesome to fontawesome5

will-rowe/groot: v0.8.4

Will Rowe
Minor fix: clean ARG names before saving PNGs using --plotCov. Some databases have ARGs with slashes in the gene name and this was causing a panic when trying to write filenames containing the ARG.

will-rowe/groot: v0.8.4

Will Rowe
Minor fix: clean ARG names before saving PNGs using --plotCov. Some databases have ARGs with slashes in the gene name and this was causing a panic when trying to write filenames containing the ARG.

nicktest title update23

Alissa Nedossekina, Xufeng Wang, Steven Clark, Arun Akkala & Nicholas Kisseberth
testing contribtool

geuvStore2

VJ Carey

ORCID Registry Localization (email): Arabic

ORCID Community Translators
The email java property file for the Arabic localization of the ORCID Registry. The email file includes the text of automated emails and notifications issued to users from the ORCID Registry.
Translators and reviewers contribute the ORCID Registry translation using Transifex.

Time-Domain Characterization of Terahertz Conducting Polymers

Konstantinos Prokopidis
A comprehensive framework for the theoretical and experimental investigation of thin conducting films for terahertz applications is presented. The electromagnetic properties of conducting polymers spin-coated on low-loss dielectric substrates are characterized by means of terahertz time-domain spectroscopy and interpreted through the Drude-Smith model. The analysis is complemented by an advanced finite-difference time-domain algorithm, which rigorously deals with both the dispersive nature of the involved materials and the extremely subwavelength thickness of the conducting films. Significant...

EMT potential for Cu-Zr metallic glasses developed by Paduraru et al. (2007) v000

Jakob Schiøtz
Effective Medium Theory (EMT) model based on the EMT implementation in ASAP (https://wiki.fysik.dtu.dk/asap). Effective Medium Theory is a many-body potential of the same class as Embedded Atom Method, Finnis-Sinclair etc. The main term in the energy per atom is the local density of atoms. The functional form implemented here is that of Ref. 1. The principles behind EMT are described in Refs. 2 and 3 (with 2 being the more detailed and 3 being the...

CRAWDAD dataset tools/simulate/uoi/adyton (v. 2016-04-21)

Nikolaos Papanikos, Dimitrios-Georgios Akestoridis & Evangelos Papapetrou
Adyton is an event-driven network simulator, written in C++, for Opportunistic Networks (a.k.a. Delay-Tolerant Networks) that is capable of processing contact traces. The Adyton simulator supports a plethora of routing protocols and real-world contact traces, while also providing several congestion control mechanisms and buffer management policies.

ERA Interim Regional Subset

Guillaume Galibert

HCP Pipeline (FreeSurfer)

Kate Alpert
BIDS app for HCP FreeSurfer for BrainLife. Requires T1w_acpc_dc_restore.nii.gz, T1w_acpc_dc_restore_brain.nii.gz, and T2w_acpc_dc_restore.nii.gz from PreFS pipeline. (Please see https://github.com/Washington-University/HCPpipelines/wiki/v3.4.0-Release-Notes,-Installation,-and-Usage#structural-preprocessing for more information on HCP structural pipelines.)

evanodell/parlitools: # parlitools 0.3.1

Evan Odell
Fixed formatting of percentages in the leave_votes_west dataset so they are all scaled on 0-1 rather than some on 0-1 and some on 0-100. Improved the organisation of the British Election Study dataset documentation.

evanodell/parlitools: # parlitools 0.3.1

Evan Odell
Fixed formatting of percentages in the leave_votes_west dataset so they are all scaled on 0-1 rather than some on 0-1 and some on 0-100. Improved the organisation of the British Election Study dataset documentation.

Simstrat-WorkflowModellingSwissLakes

Adrien Gaudard
Python script for 1D lake modelling using Simstrat with automatic data assimilation, model calibration and model update.

Simstrat-WorkflowModellingSwissLakes

Adrien Gaudard
Python script for 1D lake modelling using Simstrat with automatic data assimilation, model calibration and model update.

Parameterized ASCAT SZO Spatial Response Function

David Long

ORCHIDEE-ROUTING: A new river routing scheme using a high resolution hydrological database

Trung NGUYEN-QUANG, Jan POLCHER, Agnès DUCHARNE, Thomas ARSOUZE, Xudong ZHOU, Ana SCHNEIDER & Lluís FITA
This study presents a revised river routing scheme (RRS) for the Organising Carbon and Hydrology in Dynamic Ecosystems (ORCHIDEE) land surface model. The revision is carried out to benefit from the high resolution topography provided the Hydrological data and maps based on SHuttle Elevation Derivatives at multiple Scales (HydroSHEDS), processed to a resolution of approximately 1 kilometer. The RRS scheme of the ORCHIDEE uses a unit-to-unit routing concept which allows to preserve as much of...

SOFT-IO: SOft attribution using FlexparT and carbon monoxide emission inventories for In-situ Observation database

B. Sauvage, A. Auby & A. Fontaine
SOFT-IO is a tool based on the FLEXPART particle dispersion model (Stohl et al., 2005) coupled on emission inventories provided in the scientific community. It has been developed to quantify source/receptor links for atmospheric trace gases. SOFT-IO simulates the contributions of anthropogenic and biomass burning emissions from the ECCAD emission inventory database for all locations and times corresponding to the measured carbon monoxide mixing ratio along each flight measurements. The main goal is to supply...

A validated model for the dispersion of exhaust emissions from aircraft in their take-off roll

A Graham, MA Bennett, SM Christie & DW Raper
This data is to supplement the forthcoming paper: 'A validated model for the dispersion of exhaust emissions from aircraft in their take-off roll' by Graham, Bennett, Christie and Raper. TOdisp.f95 - Fortran code to numerically solve the model described in the paper. TOdispResScenA.txt - Specimen output file A of the numerical solution produced by the Fortran code in TOdisp.f95. TOdispResScenB.txt - Specimen output file B of the numerical solution produced by the Fortran code in...

R Script for Combining Datasets

Elizabeth Roberto & Meredith Reba
The file contains a sample R script which can be used to combine the three global, city-level population datasets.

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