93,120 Works

MaxStrange/ArtieInfant: Thesis Release

Max Strange
This release includes all the code that was used in producing the results in my thesis.

MaxStrange/ArtieInfant: Thesis Release

Max Strange
This release includes all the code that was used in producing the results in my thesis.

idaholab/XFEMParaviewPlugin

Ben Spencer
The XFEMClipPartialElements tool is a plugin for the open-source Paraview visualization software to correctly visualize results with discontinuities represented using the extended finite element method (XFEM) in MOOSE-based codes.

caltechlibrary/dataset: Bug fixes, test updates, added Python module functionality

Robert Doiel & Thomas E Morrell
Fixed cli bug when sync-recieve for a CSV file on command (was writing to stdout even when CSV filename provided). Fixed broken tests for GSheet, consolidated how they get processed on the Python module. Add support for sync_send_csv, sync_send_gsheet, sync_recieve_csv and sync_recieve_gsheet in Python module.

HVS-MaxPol

Mahdi S. Hosseini, Yueyang Zhang & Konstantinos N. Plataniotis
A MATLAB package for No-Reference (NR) Image Sharpness Assessment (ISA) of Natural Images

bluescarni/mppp: mp++ 0.16

Francesco Biscani, 7ofNine, Dario Izzo & The Gitter Badger
This is a quick release which fixes an issue in the versioning of the mp++ shared library. No code changes have been made since 0.15.

bluescarni/mppp: mp++ 0.16

Francesco Biscani, 7ofNine, Dario Izzo & The Gitter Badger
This is a quick release which fixes an issue in the versioning of the mp++ shared library. No code changes have been made since 0.15.

LAMMPS Vashishta potential for the In-P system developed by Branicio et al. (2009) v000

Ronald E. Miller
Indium phosphide is investigated using molecular dynamics (MD) simulations and density-functional theory calculations. MD simulations use a proposed effective interaction potential for InP fitted to a selected experimental dataset of properties. The potential consists of two- and three-body terms that represent atomic-size effects, charge–charge, charge–dipole and dipole–dipole interactions as well as covalent bond bending and stretching. Predictions are made for the elastic constants as a function of density and temperature, the generalized stacking fault energy...

Freesurfer Group Analysis

Soichi Hayashi
Do some basic group analysis on freesurfer outputs

One node driving synchronisation

Chengwei Wang
computer codes used for paper by Chenwei Wang, Celso Grebogi, Murilo S. Baptista One node driving synchronisation, Nature Scientific Reports (2015).

Softaware from QDMR: a quantitative method for identification of differentially methylated regions by entropy.

Zhang Y, Liu H, Lv J, Xiao X, Zhu J, Liu X, Su J, Li X, Wu Q, Wang F & Cui Y
Allows users to quantify methylation difference and identify differentially methylated regions (DMRs) across multiple samples. QDMR is a quantitative approach genome-wide quantitative comparisons of DNA methylation among multiple samples based on Shannon entropy. The software can be used as an effective tool for the quantification of methylation difference and identification of DMRs across multiple samples.

Demo of Loading and Visualizing Proteins from the RCSB Protein Data Bank

Martin Hunt
Demo of Loading and Visualizing Proteins from the RCSB Protein Data Bank

PriMux

None None
PriMux is used to compute sets of compatible Polymerase Chain Reaction (PCR)signatures that can be used for detecting the presence of biological species in a small sample of material. Before use, the computed signatures must be empirically tested in a wet lab.

Lagrangian Multipliers for Pattern Creation and Change Detection in Time series Data

Roonak Rezvani, Payam Barnaghi & Shirin Enshaeifar
There are functions for each method (Lagrangian representation and change detection) There is an example experiment for comparing my Lagrangian representation and other methods. There is dataset for the example experiment. Paper Abstract - The rapid growth of Internet of Things (IoT) and sensing technologies that provide (near-) real-time data streams have led to an increasing interest in applying time series data analysis methods to this type of data. There are many methods in this...

LAMMPS ADP potential for the Cu-Ta system developed by Pun et al. (2015) v000

Ellad Tadmor
Atomistic computer simulations are capable of providing insights into physical mechanisms responsible for the extraordinary structural stability and strength of immiscible Cu–Ta alloys. To enable reliable simulations of these alloys, we have developed an angular-dependent potential (ADP) for the Cu–Ta system by fitting to a large database of first-principles and experimental data. This, in turn, required the development of a new ADP potential for elemental Ta, which accurately reproduces a wide range of properties of...

Tract Analysis Profiles

Brad Caron
Create plots of diffusion metrics (i.e. FA, MD, RD, AD) for each of the segmented tracts from AFQ, known as Tract Profiles. Obtains streamline positions from segmented tracts and plots the metrics of interest along "nodes" of the tract, allowing for comparison of individual subject tracts. Requires the dt6 output from dtiinit and a white matter classification output from AFQ or WMA

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