84,968 Works

GIfMI/ScannerTrigger: ScannerTrigger v0.1

Pieter Vandemaele
First release of the wrapper module to interface a MRI scanner with a Python based stimulus presentation program (eg PsychoPy, OpenSesame or just an plain Python script). This version includes Python 2 and Python 3 compatible modules.

GIfMI/ScannerTrigger: ScannerTrigger v0.1

Pieter Vandemaele
First release of the wrapper module to interface a MRI scanner with a Python based stimulus presentation program (eg PsychoPy, OpenSesame or just an plain Python script). This version includes Python 2 and Python 3 compatible modules.

HelenKettle/HopperModel: HopperModel

HelenKettle
This model goes with the paper 'Quantifying parasitoid and predator controls on rice hopper eggs using a dynamic stage-structured model and field data' in Journal of Applied Ecology.

HelenKettle/HopperModel: HopperModel

HelenKettle
This model goes with the paper 'Quantifying parasitoid and predator controls on rice hopper eggs using a dynamic stage-structured model and field data' in Journal of Applied Ecology.

UPOsHam: A Python package for computing unstable periodic orbits in two degrees of freedom Hamiltonian systems

Wenyang Lyu, Shibabrat Naik & Stephen Wiggins
This Python package is a collection of three methods for computing unstable periodic orbits in Hamiltonian systems that model a diverse array of problems in physical sciences and engineering. The unstable periodic orbits exist in the bottleneck of the equipotential line V(x,y) = E and project as lines on the configuration space (x,y). A brief description is available in the paper directory. The live version of the package along with demonstrations is available at https://github.com/WenYangLyu/UPOsHam

UPOsHam: A Python package for computing unstable periodic orbits in two degrees of freedom Hamiltonian systems

Wenyang Lyu, Shibabrat Naik & Stephen Wiggins
This Python package is a collection of three methods for computing unstable periodic orbits in Hamiltonian systems that model a diverse array of problems in physical sciences and engineering. The unstable periodic orbits exist in the bottleneck of the equipotential line V(x,y) = E and project as lines on the configuration space (x,y). A brief description is available in the paper directory. The live version of the package along with demonstrations is available at https://github.com/WenYangLyu/UPOsHam

righteous-fa

RICHARD TJÖRNHAMMAR
# Righteous Pathway Factor Analysis
Decomposes a set of expressions into a group expression using
factor analysis. The expression regulation can be studied via
an ANOVA that relates it to the observables in the journal
file. The final p values are then FDR corrected and the resulting
q values are produced. The journal and analyte expression file must be ordered
the same way with respect to the samples that are
positioned on the columns. Visit...

righteous-fa

RICHARD TJÖRNHAMMAR
# Righteous Pathway Factor Analysis
Decomposes a set of expressions into a group expression using
factor analysis. The expression regulation can be studied via
an ANOVA that relates it to the observables in the journal
file. The final p values are then FDR corrected and the resulting
q values are produced. The journal and analyte expression file must be ordered
the same way with respect to the samples that are
positioned on the columns. Visit...

impetuous-gfa

Richard Tjörnhammar
# Simple Group Analysis
Decomposes a set of expressions into a group expression.
The toolkit currently offers enrichment analysis, hierarchical
enrichment analysis as well group decomposition analysis.
The expression regulation can be studied via a statistical
test that relates it to the observabels in the journal file.
The final p values are then FDR corrected and the resulting
adjusted p values are produced. The journal and analyte expression file must be ordered
the same way...

impetuous-gfa

Richard Tjörnhammar
# Simple Group Analysis
Decomposes a set of expressions into a group expression.
The toolkit currently offers enrichment analysis, hierarchical
enrichment analysis as well group decomposition analysis.
The expression regulation can be studied via a statistical
test that relates it to the observabels in the journal file.
The final p values are then FDR corrected and the resulting
adjusted p values are produced. The journal and analyte expression file must be ordered
the same way...

nismod/smif: v1.2.0

Tom Russell, Will Usher, Roald Lemmen, Thibault Lestang, Fergus Cooper & Craig Robson
Features: Warm start avoids re-running models within a partially-complete timestep DAFNI scheduler plugin Convert CSV to Parquet store Create model runs corresponding to all variants in a scenario Results object gives access to all model run results (helper wrapper around a Store) Fixes: Handle missing dims in dependency validation Clear results before new run Update pytest and fix testing for error messages Fix spec/data mismatch when reading scenario data Config update may be required: Data...

nismod/smif: v1.2.0

Tom Russell, Will Usher, Roald Lemmen, Thibault Lestang, Fergus Cooper & Craig Robson
Features: Warm start avoids re-running models within a partially-complete timestep DAFNI scheduler plugin Convert CSV to Parquet store Create model runs corresponding to all variants in a scenario Results object gives access to all model run results (helper wrapper around a Store) Fixes: Handle missing dims in dependency validation Clear results before new run Update pytest and fix testing for error messages Fix spec/data mismatch when reading scenario data Config update may be required: Data...

containerit: Generating Dockerfiles for reproducible research with R

Daniel Nüst & Matthias Hinz
containerit version 0.6.0 published after review with the Journal of Open Source Software. Project website: https://o2r.info/containerit/ Code repository: https://github.com/o2r-project/containerit/ The package containerit automates the generation of Dockerfiles for workflows in R, based on images by the Rocker project. The core feature of containerit is that it transforms the local session information into a set of instructions which can be serialised as a Dockerfile.

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