22,478 Works

Perseids-Project/Journey-Of-The-Hero: Release 1.0.0

Bridget Almas, Thibault Clerice &
Official Release of the Journey of the Hero code.

Poissonconsulting/Sgpdatr: Sage Grouse Lek Areal Disturbance R Data Package

Joe Thorley
For resubmission

Kirstiejane/Brainsforpublication: Test

Kirstie Whitaker & Michael Notter
test

Kirstiejane/Brainsforpublication: 2017-01-30

Kirstie Whitaker & Michael Notter
This is the first release of the BrainsForPublication code repository. All typos, edits and suggestions are welcome!

Proycon/Clam: V2.1.8

Maarten Van Gompel
Minor update release (adds loadmetadata parameter to CLAMClient API)

Cboettig/Openscience-Whitepaper: Open Science: Balancing Individual Incentives With Common Good

Carl Boettiger
This release is a fully re-written draft relative to v0.1. This whitepaper was written in response to seven questions on open science issued by invitation to the NSF/NIH ImagineU Conference (http://www.ncsa.illinois.edu/Conferences/ImagineU/) to be held on March 8-9, 2017. These answers reflect my own experiences and opinions at the time of writing, and focus primarily though not exclusively on examples from my own field of ecology and evolutionary biology. This is a working paper whose primary...

Cboettig/Openscience-Whitepaper: Open Science: Balancing Individual Incentives With Common Good

Carl Boettiger
This whitepaper was written in response to seven questions on open science issued by invitation to the NSF/NIH ImagineU Conference (http://www.ncsa.illinois.edu/Conferences/ImagineU/) to be held on March 8-9, 2017. These answers reflect my own experiences and opinions at the time of writing, and focus primarily though not exclusively on examples from my own field of ecology and evolutionary biology. This is a working paper whose primary goal is to spark discussion on the topic, and may...

Peckhams/Topoflow: Topoflow 3.5

Scott D. Peckham
This is a Python package that contains the TopoFlow spatial hydrologic model. It includes: (1) the EMELI plug-and-play modeling framework, (2) a set of 20 plug-and-play, model components with Basic Model Interface (BMI), (3) a set of low-level utilities used by all components, (4) complete documentation in the topoflow/docs folder, (5) several sets of example data for testing in the topoflow/examples folder. The set of model components includes many hydrologic process components: 3 channel routing,...

Twangsd/Epigenetic_Aging_Mouse_Livers: Epigenetic Aging Signatures In Mice Livers Are Slowed By Dwarfism, Calorie Restriction And Rapamycin Treatment

This is the set of notebooks and scripts that were used to create all analyses and figures for the manuscript entitled "Epigenetic aging signatures in mice livers are slowed by dwarfism, calorie restriction and rapamycin treatment". Much of the analyses required access to parallel computing framework, where the outputs of these various computations are further analyzed. This serves to provide an outline for analyses that were conducted in forming the results of the manuscript. If...

Firelab/Windninja: 3.1.3

Kyle Shannon, Natalie Wagenbrenner, Jason Forthofer &
A diagnostic wind model developed for use in wildland fire modeling.

Tudoetknjt/Ed810593 V1.0

Janis Tiemann
No description provided.

Gfgeocoder: V0.2-Rc

Gianfranco Di Pietro & Fabio Rinnone
GFgeocoder is a tool written in Java language that allow to make parallel requests to some Online Geocoding Services, passing in input the files containing strings of addresses collected. Obtained results are stored in tabular mode, in CSV format. GFgeocoder is a multiplatform tool executable from command line and can be run as a background daemon. GFgeocoder allows to load input CSV file that contains two columns: first column, named address, must contains addresses and...

Broadinstitute/Viral-Ngs: V1.15.0

Daniel Park, Chris Tomkins-Tinch, Irwin Jungreis, Simon Ye, , Hanna , Mike Lin &
New: Improvements to the pipeline to support single-end reads in additional stages, including the depletion, filtering, and metagenomic steps (blastn, bmtagger, trimmomatic, mvicuna, kraken) Scripts added related to auto deployment of viral-ngs conda package Updated/changed: novoalign 3.04.04 -> 3.06.05

Broadinstitute/Viral-Ngs: V1.15.1

Daniel Park, Chris Tomkins-Tinch, Irwin Jungreis, Simon Ye, , Hanna , Mike Lin &
Changed: updated docs (no functional changes to code)

donghalle/first: test0.1

hello in f1.c

Urbainvaes/Code_Paper_Spectral: State When Accepted For Publication

Urbain Vaes
Spectral method for the solution of multiscale SDEs

Urbainvaes/Code_Paper_Spectral: Code Used To Generate Figures In Accepted Publication

Urbain Vaes
Spectral method for the solution of multiscale SDEs

Durack1/Durolib: 1.0.1

Paul J. Durack & Charles Doutriaux
python generic library

Scitools/Iris: Iris 1.12.0 Rc1

Richard Hattersley, Ed Campbell, Phil Elson, Bill Little, Patrick Peglar, Byron Blay, , Peter Killick, Elliott Sales De Andrade, , Andrew Dawson, , , Daniel Kirkham, Corinne Bosley, Filipe , Armin Leuprecht, Stephan Hoyer, Ruth Comer, Ian Edwards, Niall Robinson, Jamie Kettleborough, , Phil Bentley, … & Andreas Hilboll
New release candidate

Mirams/Pyhillfit: Pyhillfit: Code To Fit Dose-Response Hill Curve Parameters In A Bayesian Inference Framework

Gary Mirams, Ross Johnstone, Remi Bardenet & David Gavaghan
Code to load and fit dose response curves in a Bayesian inference framework

Caspr - Cellular Automata For Spatial Pressure In R

Florian Schneider, Alexandre Génin, Sabiha Majumder, , Miguel Berdugo, Alain Danet, & Sonia K\'Efi
The code provided here runs spatial disturbance models in a cellular automata framework. This is part of a collaborative project between the group of Sonia Kéfi (Institut de Sciences d'Evolution, CNRS, IRD, Université Montpellier, France) and Vishwesha Guttal (Center for Ecological Sciences, Indian Institute of Science, Bangalore, India). This is version 2.0.1 (git master as of commit e191c7cfaebe1499801e08d5fda1728d4697051f )

G.A.M.E.: Gpu-Accelerated Mixture Elucidator

Alioune Schurz, Bo Han Su, Tony Tsung-Yu Lu & Yufeng J. Tseng
This release archives the Python script and datasets of G.A.M.E. G.A.M.E. is a dynamics programming-based algorithm equipped with GPU-acceleration feature, allowing up to 5 decimal digits for input mass data.

C-Cube/Smbc: Version 0.2

Simon Cruanes
First usable version of smbc. It accepts a fragment of TIP.

Jhpoelen/Eol-Globi-Data: Decouple Github Checker From Github Api

Jorrit Poelen, James Simons, Chris Mungall, José R. Ferrer Paris, Robert Reiz, , , Shannon VanWagner & Brian Hayden
This maintenance release includes, but is not limited to: decoupling GitHub Checker tool from using the GitHub api to avoid build failures due to exceeding api rate limits to enable for more detailed troubleshooting of datasets / parsers.

Coin-Or/Gimpy: Version 1.3.11

Ted Ralphs & Aykut Bulut
A graph library containing pure Python implementations of a variety of graph algorithms

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