9,901 Works

fastai

Jeremy Howard, Sylvain Gugger, Rachel Thomas, Stas Bekman, Francisco Ingham & Fred Monroe
The fastai deep learning library, plus lessons and tutorials https://docs.fast.ai/
The fastai library simplifies training fast and accurate neural nets using modern best practices. See the fastai website to get started. The library is based on research into deep learning best practices undertaken at fast.ai, and includes "out of the box" support for vision, text, tabular, and collab (collaborative filtering) models. For brief examples, see the examplesfolder; detailed examples are provided in the full documentation.

LBP study_CHS_UoN_Stata code

This is the do-file containing the syntaxes used for the data processing and analysis. Version 13 of Stata was used.

Eprime code

Bao Hong
Measurement of the Vertical Spatial Metaphor of Power Concepts Using the Implicit Relational Assessment Procedure

Code_new.rar

, Zhi Lu, , Hui Qiao, Tao Yan, , Xu Zhang, & You Zhou
Matlab code for "Phase-space deconvolution for light field microscopy"

Code_new.rar

, Zhi Lu, , Hui Qiao, Tao Yan, , Xu Zhang, & You Zhou
Matlab code for "Phase-space deconvolution for light field microscopy"

Permutation test for contaminated data and skewness analysis

Jaroslav Flegr & Petr Tureček
R script for permutation test for (false negatives) contaminated data. Supplementary material for the paper: New approach and new program for analyses of false negatives-contaminated data in medicine and biology. Authors of paper: Jaroslav Flegr & Petr Tureček, author of the script Petr Tureček
Abstract Background: No serological assay has 100% sensitivity. Statistically, the concentration of specific antibodies against antigens of parasites decreases with the duration of infection. This can result in false negative outputs of...

R Script On the diverse and opposing effects of nutrition on pathogen virulence .R

Victoria Pike, Katrina Lythgoe & Kayla King
This is the code to accompany the meta analysis found in the manuscript 'On the diverse and opposing effects of nutrition on pathogen virulence'.

LBP study_CHS_UoN_Stata code

This is the do-file containing the syntaxes used for the data processing and analysis. Version 13 of Stata was used.

Etch simulation code

Marcell Kiss
As supplementary information, we include the MATLAB code to execute the simulations we performed to investigate the crystallographic etch process. The main simulation is the comes first in the file, with supporting functions merged afterwards. The simulated mask geometry needs to supplied for the program in the same folder, and the name set in the simulation code.

Noisy park bench.py from Minimal descriptions of cyclic memories. 13 December 2018 7 May 2019

Joseph D. Paulsen & Nathan C. Keim
Simulation code for the park bench model, as a Python script. This code was used to generate the data for the manuscript that is also archived here in the ESM.

EwE tools for MSP user guide.pdf

Jeroen Steenbeek
The Maritime Spatial Planning (MSP) Challenge 2050 serious game is an immersive, three-dimensional software system that educates stakeholders, planners and the general public about trade-offs and environmental consequences of planning decisions in the marine and coastal ecosystem over space and time.

The MSP software outsources its ecological calculations to the Ecopath with Ecosim (EwE) food web modelling approach.Although this integration opens up the possibility to use a large number of EwE models for MSP game...

SOSLI

Sujit Kumar Sahoo
The data and code to do SOSLI.

R code: Coho survival manuscript analyses and figures

Ross Vander Vorste
R code to produce results and figures for Vander Vorste et al. 2019 manuscript in review
Data can be downloaded at: https://figshare.com/projects/From_refugia_to_ecological_traps_extreme_drought_threatens_persistence_of_an_endangered_fish_in_intermittent_streams/66611

R codes

&
There are three R codes, consisting of the selection of the optimal bandwidths for geographically and temporally weighted regresion model (GTWRAIC.R), the selection of the optimal bandwidths for mixed geographically and temporally weighted regresion model (MGTWRAIC.R) and the calibration method of mixed geographically and temporally weighted regresion model (MGTWRcalibration.R).

Alpine mask script

Riccardo Testolin
A sample of the R script used for modeling treeline elevation using quantile regression and extract alpine areas.

genbank_downloadR: Batch downloading of DNA or protein sequences from GenBank in R

Vikram B. Baliga
Batch downloading of DNA or protein sequences from GenBank
See the R script get_GenBank_DNA.R for details. Example data are provided in this repo

md_Parrinello-Rahman.mdp

Deniz Meneksedag Erol
Run parameter file for production run at NPT ensemble using Parrinello-Rahman barostat

R script for all data analyses presented in the manuscript

Pierre Nouhaud
This R script contains all analyses performed in the paper (statistical analyses & data visualization).

Code and selected model outputs for \"Informing management decisions for ecological networks, using dynamic models calibrated to noisy time-series data\"

Matthew P. Adams
All of the code, and selected model output files, associated with the paper "Informing management decisions for ecological networks, using dynamic models calibrated to noisy time-series data" published in Ecology Letters.

The code and model output files contained in this repository are sufficient to generate all results shown in the paper (including all of the results shown in Supporting Information). The code generates 50 GB of additional results files: these results files are not provided in...

vector-tile

Jia Song
The code includes server-side program and web-side program. The server-side program has two parts, one is to perform feature tiling, which converts features to vector tiles. The other is web services for serving feature-based vector tiles. In order to apply key-value store for vector tiles, Redis has to be installed. The web-side program is web-based map application using feature-based vector tiles. The URL to request vector tiles should be configured first.

hello_world (fe16338fc78f73ae4caa11673497f84e97df3961)

Jan Lietava
hello_world (Version fe16338fc78f73ae4caa11673497f84e97df3961)

Test upload

Jan Lietava
hello_world (Version fe16338fc78f73ae4caa11673497f84e97df3961)

python

full_test.nb

Alastair Kay

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